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FANTOM3 - Functional Annotation Of Mouse -

Directories for bulk downloading

FANTOM3 site
    https://fantom.gsc.riken.jp/3/download/FANTOM3/

cDNA Annotation (fantomdb)
    https://fantom.gsc.riken.jp/3/download/fantomdb/3.0/

RTPS (Representative Transcript and Protein Sets)
    https://fantom.gsc.riken.jp/3/download/RTPS/

CAGE Basic Database (mouse)
    https://fantom.gsc.riken.jp/3/p/cage/download/mm5/

CAGE Basic Database (human - a comprehensive version in current)
    https://fantom.gsc.riken.jp/3/cage/download/hg17prmtr/

CAGE Analysis Database (mouse)
    https://fantom.gsc.riken.jp/3/p/cage_analysis/export/mm5/

CAGE Analysis Database (human - a comprehensive version in current)
    https://fantom.gsc.riken.jp/3/cage_analysis/export/hg17prmtr/

Genomic Elements Database (genome coordinates)
    https://fantom.gsc.riken.jp/3/download/FANTOM3/GenomicElements/

DDBJ accessions
    https://fantom.gsc.riken.jp/3/download/FANTOM3/DDBJ/
Genome Exploration Research Group
RIKEN Genomic Sciences Center(GSC)
RIKEN Yokohama Institute
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