Source Name Comment [rna_tube] Comment [sample_name] Comment [organism] Comment [barcode] Protocol REF Parameter [rna_extraction] Extract Name Comment [rna_id] Comment [Material Type] Comment [comment_on_rna] Protocol REF Comment [lsid] Parameter [library_protocol] Library Name Comment [library_id] Protocol REF Parameter [sequence_protocol] Parameter [machine_name] Parameter [run_name] Parameter [flowcell.channel] File Name Comment [sequence_raw_file] Protocol REF Parameter [sex] File Name 3856-67B2+3858-67D2 3856-67B2+3858-67D2 mES, nuclear, short fragment (Nanog), biol_rep1 Mus musculus CCGTCC 3856-67B2+3858-67D2.rna 3856-67B2+3858-67D2.rna Pool of RNA 3856 and 3858 OP-SOLEXA-shortRNA-TruSeq-v2.0 1198 OP-SOLEXA-shortRNA-TruSeq-v2.0 SRhi10035 SRhi10035 OP-HiSeq2000-sequencing-cBot-v3.0 OP-HiSeq2000-sequencing-cBot-v3.0 NA NA NA /sequencedata/Hiseq2000/111213_SN419_0130_BD0E4LACXX/ /sequencedata/Hiseq2000/111213_SN419_0130_BD0E4LACXX/ bwa_aln male mES%2c%20nuclear%2c%20short%20fragment%20%28Nanog%29%2c%20biol_rep1.SRhi10035.3856-67B2+3858-67D2.mm9.CCGTCC.bam 3857-67C2+3859-67E2 3857-67C2+3859-67E2 mES, cytosolic, short fragment (Nanog), biol_rep4 Mus musculus GTAGAG 3857-67C2+3859-67E2.rna 3857-67C2+3859-67E2.rna Pool of RNA 3857 and 3859 OP-SOLEXA-shortRNA-TruSeq-v2.0 1198 OP-SOLEXA-shortRNA-TruSeq-v2.0 SRhi10035 SRhi10035 OP-HiSeq2000-sequencing-cBot-v3.0 OP-HiSeq2000-sequencing-cBot-v3.0 NA NA NA /sequencedata/Hiseq2000/111213_SN419_0130_BD0E4LACXX/ /sequencedata/Hiseq2000/111213_SN419_0130_BD0E4LACXX/ bwa_aln male mES%2c%20cytosolic%2c%20short%20fragment%20%28Nanog%29%2c%20biol_rep4.SRhi10035.3857-67C2+3859-67E2.mm9.GTAGAG.bam 4473-67C1 4473-67C1 mES, nuclear, short fragment (FVB), biol_rep2 Mus musculus GTTTCG 4473-67C1.rna 4473-67C1.rna OP-SOLEXA-shortRNA-TruSeq-v2.0 1198 OP-SOLEXA-shortRNA-TruSeq-v2.0 SRhi10035 SRhi10035 OP-HiSeq2000-sequencing-cBot-v3.0 OP-HiSeq2000-sequencing-cBot-v3.0 NA NA NA /sequencedata/Hiseq2000/111213_SN419_0130_BD0E4LACXX/ /sequencedata/Hiseq2000/111213_SN419_0130_BD0E4LACXX/ bwa_aln male mES%2c%20nuclear%2c%20short%20fragment%20%28FVB%29%2c%20biol_rep2.SRhi10035.4473-67C1.mm9.GTTTCG.bam 3947-67D1 3947-67D1 mES, cytosolic, short fragment (FVB), biol_rep5 Mus musculus GTGGCC 3947-67D1.rna 3947-67D1.rna OP-SOLEXA-shortRNA-TruSeq-v2.0 1198 OP-SOLEXA-shortRNA-TruSeq-v2.0 SRhi10035 SRhi10035 OP-HiSeq2000-sequencing-cBot-v3.0 OP-HiSeq2000-sequencing-cBot-v3.0 NA NA NA /sequencedata/Hiseq2000/111213_SN419_0130_BD0E4LACXX/ /sequencedata/Hiseq2000/111213_SN419_0130_BD0E4LACXX/ bwa_aln male mES%2c%20cytosolic%2c%20short%20fragment%20%28FVB%29%2c%20biol_rep5.SRhi10035.3947-67D1.mm9.GTGGCC.bam 4481-67I1+4482-67B2 4481-67I1+4482-67B2 miPS, nuclear, short fragment (T), biol_rep3 Mus musculus GTGAAA 4481-67I1+4482-67B2.rna 4481-67I1+4482-67B2.rna OP-SOLEXA-shortRNA-TruSeq-v2.0 1198 OP-SOLEXA-shortRNA-TruSeq-v2.0 SRhi10035 SRhi10035 OP-HiSeq2000-sequencing-cBot-v3.0 OP-HiSeq2000-sequencing-cBot-v3.0 NA NA NA /sequencedata/Hiseq2000/111213_SN419_0130_BD0E4LACXX/ /sequencedata/Hiseq2000/111213_SN419_0130_BD0E4LACXX/ bwa_aln male miPS%2c%20nuclear%2c%20short%20fragment%20%28T%29%2c%20biol_rep3.SRhi10035.4481-67I1+4482-67B2.mm9.GTGAAA.bam 3950-67A2+3951-67C2 3950-67A2+3951-67C2 miPS, cytosolic, short fragment (T), biol_rep6 Mus musculus GTCCGC 3950-67A2+3951-67C2.rna 3950-67A2+3951-67C2.rna OP-SOLEXA-shortRNA-TruSeq-v2.0 1198 OP-SOLEXA-shortRNA-TruSeq-v2.0 SRhi10035 SRhi10035 OP-HiSeq2000-sequencing-cBot-v3.0 OP-HiSeq2000-sequencing-cBot-v3.0 NA NA NA /sequencedata/Hiseq2000/111213_SN419_0130_BD0E4LACXX/ /sequencedata/Hiseq2000/111213_SN419_0130_BD0E4LACXX/ bwa_aln male miPS%2c%20cytosolic%2c%20short%20fragment%20%28T%29%2c%20biol_rep6.SRhi10035.3950-67A2+3951-67C2.mm9.GTCCGC.bam 4479-67E1+4480-67G1 4479-67E1+4480-67G1 miPS, nuclear, short fragment (B), biol_rep2 Mus musculus GTAGAG 4479-67E1+4480-67G1.rna 4479-67E1+4480-67G1.rna OP-SOLEXA-shortRNA-TruSeq-v2.0 1198 OP-SOLEXA-shortRNA-TruSeq-v2.0 SRhi10036 SRhi10036 OP-HiSeq2000-sequencing-cBot-v3.0 OP-HiSeq2000-sequencing-cBot-v3.0 NA NA NA /sequencedata/Hiseq2000/111213_SN419_0130_BD0E4LACXX/ /sequencedata/Hiseq2000/111213_SN419_0130_BD0E4LACXX/ bwa_aln male miPS%2c%20nuclear%2c%20short%20fragment%20%28B%29%2c%20biol_rep2.SRhi10036.4479-67E1+4480-67G1.mm9.GTAGAG.bam 3948-67F1+3949-67H1 3948-67F1+3949-67H1 miPS, cytosolic, short fragment (B), biol_rep5 Mus musculus CCGTCC 3948-67F1+3949-67H1.rna 3948-67F1+3949-67H1.rna OP-SOLEXA-shortRNA-TruSeq-v2.0 1198 OP-SOLEXA-shortRNA-TruSeq-v2.0 SRhi10036 SRhi10036 OP-HiSeq2000-sequencing-cBot-v3.0 OP-HiSeq2000-sequencing-cBot-v3.0 NA NA NA /sequencedata/Hiseq2000/111213_SN419_0130_BD0E4LACXX/ /sequencedata/Hiseq2000/111213_SN419_0130_BD0E4LACXX/ bwa_aln male miPS%2c%20cytosolic%2c%20short%20fragment%20%28B%29%2c%20biol_rep5.SRhi10036.3948-67F1+3949-67H1.mm9.CCGTCC.bam 3864-67A3+3866-67C3 3864-67A3+3866-67C3 mCT, nuclear, short fragment (F), biol_rep1 Mus musculus GTGGCC 3864-67A3+3866-67C3.rna 3864-67A3+3866-67C3.rna pool of RNAs 3864, 3866 OP-SOLEXA-shortRNA-TruSeq-v2.0 1198 OP-SOLEXA-shortRNA-TruSeq-v2.0 SRhi10036 SRhi10036 OP-HiSeq2000-sequencing-cBot-v3.0 OP-HiSeq2000-sequencing-cBot-v3.0 NA NA NA /sequencedata/Hiseq2000/111213_SN419_0130_BD0E4LACXX/ /sequencedata/Hiseq2000/111213_SN419_0130_BD0E4LACXX/ bwa_aln male mCT%2c%20nuclear%2c%20short%20fragment%20%28F%29%2c%20biol_rep1.SRhi10036.3864-67A3+3866-67C3.mm9.GTGGCC.bam 3865-67B3+3867-67D3 3865-67B3+3867-67D3 mCT, cytosolic, short fragment (F), biol_rep4 Mus musculus GTTTCG 3865-67B3+3867-67D3.rna 3865-67B3+3867-67D3.rna pool of RNAs 3865, 3867 OP-SOLEXA-shortRNA-TruSeq-v2.0 1198 OP-SOLEXA-shortRNA-TruSeq-v2.0 SRhi10036 SRhi10036 OP-HiSeq2000-sequencing-cBot-v3.0 OP-HiSeq2000-sequencing-cBot-v3.0 NA NA NA /sequencedata/Hiseq2000/111213_SN419_0130_BD0E4LACXX/ /sequencedata/Hiseq2000/111213_SN419_0130_BD0E4LACXX/ bwa_aln male mCT%2c%20cytosolic%2c%20short%20fragment%20%28F%29%2c%20biol_rep4.SRhi10036.3865-67B3+3867-67D3.mm9.GTTTCG.bam 3860-67F2+3862-67H2 3860-67F2+3862-67H2 miPS, nuclear, short fragment (F), biol_rep1 Mus musculus GTCCGC 3860-67F2+3862-67H2.rna 3860-67F2+3862-67H2.rna pool of RNAs 3860, 3862 OP-SOLEXA-shortRNA-TruSeq-v2.0 1198 OP-SOLEXA-shortRNA-TruSeq-v2.0 SRhi10036 SRhi10036 OP-HiSeq2000-sequencing-cBot-v3.0 OP-HiSeq2000-sequencing-cBot-v3.0 NA NA NA /sequencedata/Hiseq2000/111213_SN419_0130_BD0E4LACXX/ /sequencedata/Hiseq2000/111213_SN419_0130_BD0E4LACXX/ bwa_aln male miPS%2c%20nuclear%2c%20short%20fragment%20%28F%29%2c%20biol_rep1.SRhi10036.3860-67F2+3862-67H2.mm9.GTCCGC.bam 3861-67G2+3863-67I2 3861-67G2+3863-67I2 miPS, cytosolic, short fragment (F), biol_rep4 Mus musculus GTGAAA 3861-67G2+3863-67I2.rna 3861-67G2+3863-67I2.rna pool of RNAs 3861, 3863 OP-SOLEXA-shortRNA-TruSeq-v2.0 1198 OP-SOLEXA-shortRNA-TruSeq-v2.0 SRhi10036 SRhi10036 OP-HiSeq2000-sequencing-cBot-v3.0 OP-HiSeq2000-sequencing-cBot-v3.0 NA NA NA /sequencedata/Hiseq2000/111213_SN419_0130_BD0E4LACXX/ /sequencedata/Hiseq2000/111213_SN419_0130_BD0E4LACXX/ bwa_aln male miPS%2c%20cytosolic%2c%20short%20fragment%20%28F%29%2c%20biol_rep4.SRhi10036.3861-67G2+3863-67I2.mm9.GTGAAA.bam 3856-67B2+3858-67D2 3856-67B2+3858-67D2 mES, nuclear, long fragment (Nanog), biol_rep1 Mus musculus CCGTCC 3856-67B2+3858-67D2.rna 3856-67B2+3858-67D2.rna mES-R08 P21 Nuclear, cell line is same with 3857-67C2; mES-R08 P20 Nuclear, cell line is same with 3859-67E2 OP-SOLEXA-shortRNA-TruSeq-v2.0 1199 OP-SOLEXA-shortRNA-TruSeq-v2.0 SRhi10038 SRhi10038 OP-HiSeq2000-sequencing-cBot-v3.0 OP-HiSeq2000-sequencing-cBot-v3.0 NA NA NA /sequencedata/Hiseq2000/120106_SN549_0045_BC05J6ACXX/ /sequencedata/Hiseq2000/120106_SN549_0045_BC05J6ACXX/ bwa_aln male mES%2c%20nuclear%2c%20long%20fragment%20%28Nanog%29%2c%20biol_rep1.SRhi10038.3856-67B2+3858-67D2.mm9.CCGTCC.bam 3857-67C2+3859-67E2 3857-67C2+3859-67E2 mES, cytosolic, long fragment (Nanog), biol_rep4 Mus musculus GTAGAG 3857-67C2+3859-67E2.rna 3857-67C2+3859-67E2.rna mES-R08 P21 Cytoplasmic, cell line is same with 3856-67B2; mES-R08 P20 Cytoplasmic, cell line is same with 3858-67D2 OP-SOLEXA-shortRNA-TruSeq-v2.0 1199 OP-SOLEXA-shortRNA-TruSeq-v2.0 SRhi10038 SRhi10038 OP-HiSeq2000-sequencing-cBot-v3.0 OP-HiSeq2000-sequencing-cBot-v3.0 NA NA NA /sequencedata/Hiseq2000/120106_SN549_0045_BC05J6ACXX/ /sequencedata/Hiseq2000/120106_SN549_0045_BC05J6ACXX/ bwa_aln male mES%2c%20cytosolic%2c%20long%20fragment%20%28Nanog%29%2c%20biol_rep4.SRhi10038.3857-67C2+3859-67E2.mm9.GTAGAG.bam 4473-67C1 4473-67C1 mES, nuclear, long fragment (FVB), biol_rep2 Mus musculus GTTTCG 4473-67C1.rna 4473-67C1.rna [FVB-1 P21 Nuclear] and [FVB-1 P21 Cytoplasmic] OP-SOLEXA-shortRNA-TruSeq-v2.0 1199 OP-SOLEXA-shortRNA-TruSeq-v2.0 SRhi10038 SRhi10038 OP-HiSeq2000-sequencing-cBot-v3.0 OP-HiSeq2000-sequencing-cBot-v3.0 NA NA NA /sequencedata/Hiseq2000/120106_SN549_0045_BC05J6ACXX/ /sequencedata/Hiseq2000/120106_SN549_0045_BC05J6ACXX/ bwa_aln male mES%2c%20nuclear%2c%20long%20fragment%20%28FVB%29%2c%20biol_rep2.SRhi10038.4473-67C1.mm9.GTTTCG.bam 3947-67D1 3947-67D1 mES, cytosolic, long fragment (FVB), biol_rep5 Mus musculus GTGGCC 3947-67D1.rna 3947-67D1.rna [FVB-1 P21 Nuclear] and [FVB-1 P21 Cytoplasmic] OP-SOLEXA-shortRNA-TruSeq-v2.0 1199 OP-SOLEXA-shortRNA-TruSeq-v2.0 SRhi10038 SRhi10038 OP-HiSeq2000-sequencing-cBot-v3.0 OP-HiSeq2000-sequencing-cBot-v3.0 NA NA NA /sequencedata/Hiseq2000/120106_SN549_0045_BC05J6ACXX/ /sequencedata/Hiseq2000/120106_SN549_0045_BC05J6ACXX/ bwa_aln male mES%2c%20cytosolic%2c%20long%20fragment%20%28FVB%29%2c%20biol_rep5.SRhi10038.3947-67D1.mm9.GTGGCC.bam 4481-67I1+4482-67B2 4481-67I1+4482-67B2 miPS, nuclear, long fragment (T), biol_rep3 Mus musculus GTGAAA 4481-67I1+4482-67B2.rna 4481-67I1+4482-67B2.rna [miPS-Tcells-i103.H12 Nuclear] and [miPS-Tcells-i103.H12 Cytoplasmic]; [miPS-Tcells-i103.H12 P24 Nuclear] and [miPS-Tcells-i103.H12 P24 Cytoplasmic] OP-SOLEXA-shortRNA-TruSeq-v2.0 1199 OP-SOLEXA-shortRNA-TruSeq-v2.0 SRhi10038 SRhi10038 OP-HiSeq2000-sequencing-cBot-v3.0 OP-HiSeq2000-sequencing-cBot-v3.0 NA NA NA /sequencedata/Hiseq2000/120106_SN549_0045_BC05J6ACXX/ /sequencedata/Hiseq2000/120106_SN549_0045_BC05J6ACXX/ bwa_aln male miPS%2c%20nuclear%2c%20long%20fragment%20%28T%29%2c%20biol_rep3.SRhi10038.4481-67I1+4482-67B2.mm9.GTGAAA.bam 3950-67A2+3951-67C2 3950-67A2+3951-67C2 miPS, cytosolic, long fragment (T), biol_rep6 Mus musculus GTCCGC 3950-67A2+3951-67C2.rna 3950-67A2+3951-67C2.rna [miPS-Tcells-i103.H12 Nuclear] and [miPS-Tcells-i103.H12 Cytoplasmic]; [miPS-Tcells-i103.H12 P24 Nuclear] and [miPS-Tcells-i103.H12 P24 Cytoplasmic] OP-SOLEXA-shortRNA-TruSeq-v2.0 1199 OP-SOLEXA-shortRNA-TruSeq-v2.0 SRhi10038 SRhi10038 OP-HiSeq2000-sequencing-cBot-v3.0 OP-HiSeq2000-sequencing-cBot-v3.0 NA NA NA /sequencedata/Hiseq2000/120106_SN549_0045_BC05J6ACXX/ /sequencedata/Hiseq2000/120106_SN549_0045_BC05J6ACXX/ bwa_aln male miPS%2c%20cytosolic%2c%20long%20fragment%20%28T%29%2c%20biol_rep6.SRhi10038.3950-67A2+3951-67C2.mm9.GTCCGC.bam 4479-67E1+4480-67G1 4479-67E1+4480-67G1 miPS, nuclear, long fragment (B), biol_rep2 Mus musculus GTAGAG 4479-67E1+4480-67G1.rna 4479-67E1+4480-67G1.rna [miPS-Bcells-i44.1B4e Nuclear] and [miPS-Bcells-i44.1B4e Cytoplasmic]; [miPS-Bcells-i44.1B4e P17 Nuclear] and [miPS-Bcells-i44.1B4e P17 Cytoplasmic] OP-SOLEXA-shortRNA-TruSeq-v2.0 1199 OP-SOLEXA-shortRNA-TruSeq-v2.0 SRhi10039 SRhi10039 OP-HiSeq2000-sequencing-cBot-v3.0 OP-HiSeq2000-sequencing-cBot-v3.0 NA NA NA /sequencedata/Hiseq2000/120106_SN549_0045_BC05J6ACXX/ /sequencedata/Hiseq2000/120106_SN549_0045_BC05J6ACXX/ bwa_aln male miPS%2c%20nuclear%2c%20long%20fragment%20%28B%29%2c%20biol_rep2.SRhi10039.4479-67E1+4480-67G1.mm9.GTAGAG.bam 3948-67F1+3949-67H1 3948-67F1+3949-67H1 miPS, cytosolic, long fragment (B), biol_rep5 Mus musculus CCGTCC 3948-67F1+3949-67H1.rna 3948-67F1+3949-67H1.rna [miPS-Bcells-i44.1B4e Nuclear] and [miPS-Bcells-i44.1B4e Cytoplasmic]; [miPS-Bcells-i44.1B4e P17 Nuclear] and [miPS-Bcells-i44.1B4e P17 Cytoplasmic] OP-SOLEXA-shortRNA-TruSeq-v2.0 1199 OP-SOLEXA-shortRNA-TruSeq-v2.0 SRhi10039 SRhi10039 OP-HiSeq2000-sequencing-cBot-v3.0 OP-HiSeq2000-sequencing-cBot-v3.0 NA NA NA /sequencedata/Hiseq2000/120106_SN549_0045_BC05J6ACXX/ /sequencedata/Hiseq2000/120106_SN549_0045_BC05J6ACXX/ bwa_aln male miPS%2c%20cytosolic%2c%20long%20fragment%20%28B%29%2c%20biol_rep5.SRhi10039.3948-67F1+3949-67H1.mm9.CCGTCC.bam 3864-67A3+3866-67C3 3864-67A3+3866-67C3 mCT, nuclear, long fragment (F), biol_rep1 Mus musculus GTGGCC 3864-67A3+3866-67C3.rna 3864-67A3+3866-67C3.rna MEF P21 Nuclear, cell line is same with 3865-67B3; MEF P20 Nuclear, cell line is same with 3867-67D3 OP-SOLEXA-shortRNA-TruSeq-v2.0 1199 OP-SOLEXA-shortRNA-TruSeq-v2.0 SRhi10039 SRhi10039 OP-HiSeq2000-sequencing-cBot-v3.0 OP-HiSeq2000-sequencing-cBot-v3.0 NA NA NA /sequencedata/Hiseq2000/120106_SN549_0045_BC05J6ACXX/ /sequencedata/Hiseq2000/120106_SN549_0045_BC05J6ACXX/ bwa_aln male mCT%2c%20nuclear%2c%20long%20fragment%20%28F%29%2c%20biol_rep1.SRhi10039.3864-67A3+3866-67C3.mm9.GTGGCC.bam 3865-67B3+3867-67D3 3865-67B3+3867-67D3 mCT, cytosolic, long fragment (F), biol_rep4 Mus musculus GTTTCG 3865-67B3+3867-67D3.rna 3865-67B3+3867-67D3.rna MEF P21 Cytoplasmic, cell line is same with 3864-67A3; MEF P20 Cytoplasmic, cell line is same with 3866-67C3 OP-SOLEXA-shortRNA-TruSeq-v2.0 1199 OP-SOLEXA-shortRNA-TruSeq-v2.0 SRhi10039 SRhi10039 OP-HiSeq2000-sequencing-cBot-v3.0 OP-HiSeq2000-sequencing-cBot-v3.0 NA NA NA /sequencedata/Hiseq2000/120106_SN549_0045_BC05J6ACXX/ /sequencedata/Hiseq2000/120106_SN549_0045_BC05J6ACXX/ bwa_aln male mCT%2c%20cytosolic%2c%20long%20fragment%20%28F%29%2c%20biol_rep4.SRhi10039.3865-67B3+3867-67D3.mm9.GTTTCG.bam 3860-67F2+3862-67H2 3860-67F2+3862-67H2 miPS, nuclear, long fragment (F), biol_rep1 Mus musculus GTCCGC 3860-67F2+3862-67H2.rna 3860-67F2+3862-67H2.rna mIPS-20D-17 P38 Nuclear, cell line is same with 3861-67G2; mIPS-20D-17 P21 Nuclear, cell line is same with 3863-67I2 OP-SOLEXA-shortRNA-TruSeq-v2.0 1199 OP-SOLEXA-shortRNA-TruSeq-v2.0 SRhi10039 SRhi10039 OP-HiSeq2000-sequencing-cBot-v3.0 OP-HiSeq2000-sequencing-cBot-v3.0 NA NA NA /sequencedata/Hiseq2000/120106_SN549_0045_BC05J6ACXX/ /sequencedata/Hiseq2000/120106_SN549_0045_BC05J6ACXX/ bwa_aln male miPS%2c%20nuclear%2c%20long%20fragment%20%28F%29%2c%20biol_rep1.SRhi10039.3860-67F2+3862-67H2.mm9.GTCCGC.bam 3861-67G2+3863-67I2 3861-67G2+3863-67I2 miPS, cytosolic, long fragment (F), biol_rep4 Mus musculus GTGAAA 3861-67G2+3863-67I2.rna 3861-67G2+3863-67I2.rna mIPS-20D-17 P38 Cytoplasmic, cell line is same with 3860-67F2; mIPS-20D-17 P21 Cytoplasmic, cell line is same with 3862-67H2 OP-SOLEXA-shortRNA-TruSeq-v2.0 1199 OP-SOLEXA-shortRNA-TruSeq-v2.0 SRhi10039 SRhi10039 OP-HiSeq2000-sequencing-cBot-v3.0 OP-HiSeq2000-sequencing-cBot-v3.0 NA NA NA /sequencedata/Hiseq2000/120106_SN549_0045_BC05J6ACXX/ /sequencedata/Hiseq2000/120106_SN549_0045_BC05J6ACXX/ bwa_aln male miPS%2c%20cytosolic%2c%20long%20fragment%20%28F%29%2c%20biol_rep4.SRhi10039.3861-67G2+3863-67I2.mm9.GTGAAA.bam 4472-67A1 4472-67A1 mES, nuclear, short fragment (C57BL), biol_rep3 Mus musculus GAGTGG 4472-67A1.rna 4472-67A1.rna [B6G-2 P22 Nuclear] and [B6G-2 P22 Cytoplasmic] OP-SOLEXA-shortRNA-TruSeq-v2.0 1213 OP-SOLEXA-shortRNA-TruSeq-v2.0 SRhi10041 SRhi10041 OP-HiSeq2000-sequencing-cBot-v3.0 OP-HiSeq2000-sequencing-cBot-v3.0 NA NA NA /sequencedata/Hiseq2000/120111_SN554_0110_BD0CVKACXX/ /sequencedata/Hiseq2000/120111_SN554_0110_BD0CVKACXX/ bwa_aln male mES%2c%20nuclear%2c%20short%20fragment%20%28C57BL%29%2c%20biol_rep3.SRhi10041.4472-67A1.mm9.GAGTGG.bam 3946-67B1 3946-67B1 mES, cytosolic, short fragment (C57BL), biol_rep6 Mus musculus GGTAGC 3946-67B1.rna 3946-67B1.rna [B6G-2 P22 Nuclear] and [B6G-2 P22 Cytoplasmic] OP-SOLEXA-shortRNA-TruSeq-v2.0 1213 OP-SOLEXA-shortRNA-TruSeq-v2.0 SRhi10041 SRhi10041 OP-HiSeq2000-sequencing-cBot-v3.0 OP-HiSeq2000-sequencing-cBot-v3.0 NA NA NA /sequencedata/Hiseq2000/120111_SN554_0110_BD0CVKACXX/ /sequencedata/Hiseq2000/120111_SN554_0110_BD0CVKACXX/ bwa_aln male mES%2c%20cytosolic%2c%20short%20fragment%20%28C57BL%29%2c%20biol_rep6.SRhi10041.3946-67B1.mm9.GGTAGC.bam 4476-67D9+4477-67F9 4476-67D9+4477-67F9 mCT, nuclear, short fragment (B), biol_rep2 Mus musculus AGTCAA 4476-67D9+4477-67F9.rna 4476-67D9+4477-67F9.rna [Prim. Lymphoblast B Nuclear] and [Prim. Lymphoblast B Cytoplasmic], _111125 OP-SOLEXA-shortRNA-TruSeq-v2.0 1213 OP-SOLEXA-shortRNA-TruSeq-v2.0 SRhi10041 SRhi10041 OP-HiSeq2000-sequencing-cBot-v3.0 OP-HiSeq2000-sequencing-cBot-v3.0 NA NA NA /sequencedata/Hiseq2000/120111_SN554_0110_BD0CVKACXX/ /sequencedata/Hiseq2000/120111_SN554_0110_BD0CVKACXX/ bwa_aln male mCT%2c%20nuclear%2c%20short%20fragment%20%28B%29%2c%20biol_rep2.SRhi10041.4476-67D9+4477-67F9.mm9.AGTCAA.bam 3998-67E9+3999-67G9 3998-67E9+3999-67G9 mCT, cytosolic, short fragment (B), biol_rep5 Mus musculus AGTTCC 3998-67E9+3999-67G9.rna 3998-67E9+3999-67G9.rna [Prim. Lymphoblast B Nuclear] and [Prim. Lymphoblast B Cytoplasmic], _111125 OP-SOLEXA-shortRNA-TruSeq-v2.0 1213 OP-SOLEXA-shortRNA-TruSeq-v2.0 SRhi10041 SRhi10041 OP-HiSeq2000-sequencing-cBot-v3.0 OP-HiSeq2000-sequencing-cBot-v3.0 NA NA NA /sequencedata/Hiseq2000/120111_SN554_0110_BD0CVKACXX/ /sequencedata/Hiseq2000/120111_SN554_0110_BD0CVKACXX/ bwa_aln male mCT%2c%20cytosolic%2c%20short%20fragment%20%28B%29%2c%20biol_rep5.SRhi10041.3998-67E9+3999-67G9.mm9.AGTTCC.bam 4478-67H9 4478-67H9 mCT, nuclear, short fragment (T), biol_rep3 Mus musculus GTGAAA 4478-67H9.rna 4478-67H9.rna [Prim. Lymphoblast T Nuclear] and [Prim. Lymphoblast T Cytoplasmic] OP-SOLEXA-shortRNA-TruSeq-v2.0 1213 OP-SOLEXA-shortRNA-TruSeq-v2.0 SRhi10041 SRhi10041 OP-HiSeq2000-sequencing-cBot-v3.0 OP-HiSeq2000-sequencing-cBot-v3.0 NA NA NA /sequencedata/Hiseq2000/120111_SN554_0110_BD0CVKACXX/ /sequencedata/Hiseq2000/120111_SN554_0110_BD0CVKACXX/ bwa_aln male mCT%2c%20nuclear%2c%20short%20fragment%20%28T%29%2c%20biol_rep3.SRhi10041.4478-67H9.mm9.GTGAAA.bam 4000-67I9 4000-67I9 mCT, cytosolic, short fragment (T), biol_rep6 Mus musculus GTCCGC 4000-67I9.rna 4000-67I9.rna [Prim. Lymphoblast T Nuclear] and [Prim. Lymphoblast T Cytoplasmic] OP-SOLEXA-shortRNA-TruSeq-v2.0 1213 OP-SOLEXA-shortRNA-TruSeq-v2.0 SRhi10041 SRhi10041 OP-HiSeq2000-sequencing-cBot-v3.0 OP-HiSeq2000-sequencing-cBot-v3.0 NA NA NA /sequencedata/Hiseq2000/120111_SN554_0110_BD0CVKACXX/ /sequencedata/Hiseq2000/120111_SN554_0110_BD0CVKACXX/ bwa_aln male mCT%2c%20cytosolic%2c%20short%20fragment%20%28T%29%2c%20biol_rep6.SRhi10041.4000-67I9.mm9.GTCCGC.bam 4476-67D9+4477-67F9 4476-67D9+4477-67F9 mCT, nuclear, long fragment (B), biol_rep2 Mus musculus AGTCAA 4476-67D9+4477-67F9.rna 4476-67D9+4477-67F9.rna OP-SOLEXA-shortRNA-TruSeq-v2.0 1214 OP-SOLEXA-shortRNA-TruSeq-v2.0 SRhi10044 SRhi10044 OP-HiSeq2000-sequencing-cBot-v3.0 OP-HiSeq2000-sequencing-cBot-v3.0 NA NA NA /sequencedata/Hiseq2000/120124_SN554_0112_AC0E2KACXX/ /sequencedata/Hiseq2000/120124_SN554_0112_AC0E2KACXX/ bwa_aln undefined_sex_type mCT%2c%20nuclear%2c%20long%20fragment%20%28B%29%2c%20biol_rep2.SRhi10044.4476-67D9+4477-67F9.mm9.AGTCAA.bam 3998-67E9+3999-67G9 3998-67E9+3999-67G9 mCT, cytosolic, long fragment (B), biol_rep5 Mus musculus AGTTCC 3998-67E9+3999-67G9.rna 3998-67E9+3999-67G9.rna OP-SOLEXA-shortRNA-TruSeq-v2.0 1214 OP-SOLEXA-shortRNA-TruSeq-v2.0 SRhi10044 SRhi10044 OP-HiSeq2000-sequencing-cBot-v3.0 OP-HiSeq2000-sequencing-cBot-v3.0 NA NA NA /sequencedata/Hiseq2000/120124_SN554_0112_AC0E2KACXX/ /sequencedata/Hiseq2000/120124_SN554_0112_AC0E2KACXX/ bwa_aln undefined_sex_type mCT%2c%20cytosolic%2c%20long%20fragment%20%28B%29%2c%20biol_rep5.SRhi10044.3998-67E9+3999-67G9.mm9.AGTTCC.bam 4478-67H9 4478-67H9 mCT, nuclear, long fragment (T), biol_rep3 Mus musculus GTGAAA 4478-67H9.rna 4478-67H9.rna OP-SOLEXA-shortRNA-TruSeq-v2.0 1214 OP-SOLEXA-shortRNA-TruSeq-v2.0 SRhi10044 SRhi10044 OP-HiSeq2000-sequencing-cBot-v3.0 OP-HiSeq2000-sequencing-cBot-v3.0 NA NA NA /sequencedata/Hiseq2000/120124_SN554_0112_AC0E2KACXX/ /sequencedata/Hiseq2000/120124_SN554_0112_AC0E2KACXX/ bwa_aln undefined_sex_type mCT%2c%20nuclear%2c%20long%20fragment%20%28T%29%2c%20biol_rep3.SRhi10044.4478-67H9.mm9.GTGAAA.bam 4000-67I9 4000-67I9 mCT, cytosolic, long fragment (T), biol_rep6 Mus musculus GTCCGC 4000-67I9.rna 4000-67I9.rna OP-SOLEXA-shortRNA-TruSeq-v2.0 1214 OP-SOLEXA-shortRNA-TruSeq-v2.0 SRhi10044 SRhi10044 OP-HiSeq2000-sequencing-cBot-v3.0 OP-HiSeq2000-sequencing-cBot-v3.0 NA NA NA /sequencedata/Hiseq2000/120124_SN554_0112_AC0E2KACXX/ /sequencedata/Hiseq2000/120124_SN554_0112_AC0E2KACXX/ bwa_aln undefined_sex_type mCT%2c%20cytosolic%2c%20long%20fragment%20%28T%29%2c%20biol_rep6.SRhi10044.4000-67I9.mm9.GTCCGC.bam 4472-67A1 4472-67A1 mES, nuclear, long fragment (C57BL), biol_rep3 Mus musculus GAGTGG 4472-67A1.rna 4472-67A1.rna OP-SOLEXA-shortRNA-TruSeq-v2.0 1214 OP-SOLEXA-shortRNA-TruSeq-v2.0 SRhi10044 SRhi10044 OP-HiSeq2000-sequencing-cBot-v3.0 OP-HiSeq2000-sequencing-cBot-v3.0 NA NA NA /sequencedata/Hiseq2000/120124_SN554_0112_AC0E2KACXX/ /sequencedata/Hiseq2000/120124_SN554_0112_AC0E2KACXX/ bwa_aln male mES%2c%20nuclear%2c%20long%20fragment%20%28C57BL%29%2c%20biol_rep3.SRhi10044.4472-67A1.mm9.GAGTGG.bam 3946-67B1 3946-67B1 mES, cytosolic, long fragment (C57BL), biol_rep6 Mus musculus GGTAGC 3946-67B1.rna 3946-67B1.rna OP-SOLEXA-shortRNA-TruSeq-v2.0 1214 OP-SOLEXA-shortRNA-TruSeq-v2.0 SRhi10044 SRhi10044 OP-HiSeq2000-sequencing-cBot-v3.0 OP-HiSeq2000-sequencing-cBot-v3.0 NA NA NA /sequencedata/Hiseq2000/120124_SN554_0112_AC0E2KACXX/ /sequencedata/Hiseq2000/120124_SN554_0112_AC0E2KACXX/ bwa_aln male mES%2c%20cytosolic%2c%20long%20fragment%20%28C57BL%29%2c%20biol_rep6.SRhi10044.3946-67B1.mm9.GGTAGC.bam