00_readme.txt
This is the supplemental materials for Ohmiya et al. 2014. We proposed a pipeline to capture reproducible transcriptional start sites (TSSs) peaks with multiple scales using capped analysis of gene expression (CAGE) datasets and named the pipeline RECLU. We applied the pipeline to the CAGE datasets for 156 human primary cells provided by the FANTOM5 project and HeLa and THP-1 cells by Kanamori-Katayama et al. 2011, and detected differentially expressed peaks between the HeLa and THP-1 samples and for all pairwise comparisons of the human primary cells. When using the link below, you will access the Track data hubs page in UCSC Genome Browser. Select the "RECLU DATA" checkbox and click "Use Selected Hubs" to display these peaks. http://genome.ucsc.edu/cgi-bin/hgHubConnect?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&hgsid=365044209
data/
Direct link to this directory:
| Name | Filesize | Last Modified |
|---|---|---|
 reclu |
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 description.txt |
597 b | Mar 04, 2014 |
| genomes.txt |
82 b | Mar 04, 2014 |
| hub.txt |
279 b | Jul 22, 2014 |
| Files: 3 | Directories: 1 | ||