DOID:4159: Difference between revisions
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|name=skin cancer | |name=skin cancer | ||
|namespace=disease_ontology | |namespace=disease_ontology | ||
|def="An organ system cancer located_in the skin that is the uncontrolled growth of abnormal skin cells." [url:http | |def="An organ system cancer located_in the skin that is the uncontrolled growth of abnormal skin cells." [url:http://www.ncbi.nlm.nih.gov/pubmedhealth/PMH0002414/] | ||
|xref=MSH:D012878;;NCI:C2920;;SNOMEDCT_2010_1_31:188143008;;SNOMEDCT_2010_1_31:190107001;;SNOMEDCT_2010_1_31:363511009;;SNOMEDCT_2010_1_31:372130007;;UMLS_CUI:C0007114 | |xref=MSH:D012878;;NCI:C2920;;SNOMEDCT_2010_1_31:188143008;;SNOMEDCT_2010_1_31:190107001;;SNOMEDCT_2010_1_31:363511009;;SNOMEDCT_2010_1_31:372130007;;UMLS_CUI:C0007114 | ||
|is_a=DOID:0060122 | |is_a=DOID:0060122 | ||
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|obo_creation_date= | |obo_creation_date= | ||
|subset= | |subset= | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
Revision as of 16:32, 26 June 2012
| Name: | skin cancer | ||
|---|---|---|---|
| Namespace: | disease_ontology | ||
| Definition: | "An organ system cancer located_in the skin that is the uncontrolled growth of abnormal skin cells." [url:http://www.ncbi.nlm.nih.gov/pubmedhealth/PMH0002414/] | ||
| Xrefs: |
| ||
| Synonyms: |
"CA - skin cancer" EXACT [SNOMEDCT_2005_07_31:363511009] "cancer of skin" RELATED [] "malignant neoplasm of skin" EXACT [MTH:NOCODE] "malignant neoplasm of skin (disorder)" EXACT [SNOMEDCT_2005_07_31:372130007] "malignant neoplasm of skin NOS (disorder)" EXACT [SNOMEDCT_2005_07_31:188143008] "malignant neoplasm of skin, unspecified (disorder)" EXACT [SNOMEDCT_2005_07_31:190107001] "melanoma and Non-melanoma skin cancer" EXACT [NCI2004_11_17:C2920] "skin cancer" EXACT [CSP2005:2020-0536] |
Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | DOID:0060122(integumentary system cancer) |
|---|
Children
| is a: | DOID:3451 (skin carcinoma) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples
Human (Homo sapiens)
- 10702-109G9 (basal cell carcinoma cell line:TE 354.T)
- 10713-109I2
- 10791-110H8 (keratoacanthoma cell line:HKA-1)
Mouse (Mus musculus)
- 10702-109G9 (basal cell carcinoma cell line:TE 354.T)
- 10713-109I2
- 10791-110H8 (keratoacanthoma cell line:HKA-1)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:4159 (skin cancer), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.55e-98 | FFCP PHASE2:Hg19::chr10:69686723..69686726,-#_c0c52e5ebb335896ee7f6bed5079758f | p@chr10:69686723..69686726, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr10:69686723..69686726,-#_c0c52e5ebb335896ee7f6bed5079758f | p@chr10:69686723..69686726, - |
| 4.52e-50 | FFCP PHASE2:Hg19::chr8:123875147..123875159,+#_929b5fb1f7f97697be90cf7fe8d2f1a7 | p26@ZHX2 |
| 4.52e-50 | FFCP PHASE1:Hg19::chr7:101448176..101448184,+#_929b5fb1f7f97697be90cf7fe8d2f1a7 | p@chr7:101448176..101448184, + |
| 4.52e-50 | FFCP PHASE2:Hg19::chr1:153431372..153431378,-#_929b5fb1f7f97697be90cf7fe8d2f1a7 | p4@S100A7 |
| 4.52e-50 | FFCP PHASE2:Hg19::chr7:101448249..101448254,+#_929b5fb1f7f97697be90cf7fe8d2f1a7 | p@chr7:101448249..101448254, + |
| 4.52e-50 | FFCP PHASE1:Hg19::chr8:123875147..123875159,+#_929b5fb1f7f97697be90cf7fe8d2f1a7 | p26@ZHX2 |
| 4.52e-50 | FFCP PHASE2:Hg19::chr7:101448277..101448287,+#_929b5fb1f7f97697be90cf7fe8d2f1a7 | p@chr7:101448277..101448287, + |
| 4.52e-50 | FFCP PHASE1:Hg19::chr7:101448249..101448254,+#_929b5fb1f7f97697be90cf7fe8d2f1a7 | p@chr7:101448249..101448254, + |
| 4.52e-50 | FFCP PHASE1:Hg19::chr1:153431372..153431378,-#_929b5fb1f7f97697be90cf7fe8d2f1a7 | p4@S100A7 |
| 4.52e-50 | FFCP PHASE2:Hg19::chr7:101448101..101448113,+#_929b5fb1f7f97697be90cf7fe8d2f1a7 | p@chr7:101448101..101448113, + |
| 4.52e-50 | FFCP PHASE2:Hg19::chr18:22080172..22080183,+#_929b5fb1f7f97697be90cf7fe8d2f1a7 | p@chr18:22080172..22080183, + |
| 4.52e-50 | FFCP PHASE1:Hg19::chr7:101448277..101448287,+#_929b5fb1f7f97697be90cf7fe8d2f1a7 | p@chr7:101448277..101448287, + |
| 4.52e-50 | FFCP PHASE2:Hg19::chr7:101448176..101448184,+#_929b5fb1f7f97697be90cf7fe8d2f1a7 | p@chr7:101448176..101448184, + |
| 4.52e-50 | FFCP PHASE1:Hg19::chr18:22080172..22080183,+#_929b5fb1f7f97697be90cf7fe8d2f1a7 | p@chr18:22080172..22080183, + |
| 4.52e-50 | FFCP PHASE1:Hg19::chr7:101448101..101448113,+#_929b5fb1f7f97697be90cf7fe8d2f1a7 | p@chr7:101448101..101448113, + |
| 3.61e-34 | FFCP PHASE2:Hg19::chr9:97563078..97563086,+#_ab3d32f2ac17d53a9a6f8032b509827d | p@chr9:97563078..97563086, + |
| 3.61e-34 | FFCP PHASE2:Hg19::chr20:49047228..49047236,-#_ab3d32f2ac17d53a9a6f8032b509827d | p@chr20:49047228..49047236, - |
| 3.61e-34 | FFCP PHASE1:Hg19::chr9:97563078..97563086,+#_ab3d32f2ac17d53a9a6f8032b509827d | p@chr9:97563078..97563086, + |
| 3.61e-34 | FFCP PHASE1:Hg19::chr20:49047228..49047236,-#_ab3d32f2ac17d53a9a6f8032b509827d | p@chr20:49047228..49047236, - |
| 5.04e-34 | FFCP PHASE1:Hg19::chr3:81671636..81671662,-#_c4ee370f8058ebe1cedca2eb8b439d96 | p@chr3:81671636..81671662, - |
| 5.04e-34 | FFCP PHASE2:Hg19::chr17:19648916..19648937,-#_c4ee370f8058ebe1cedca2eb8b439d96 | p10@ALDH3A1 |
| 5.04e-34 | FFCP PHASE1:Hg19::chr1:76127067..76127073,-#_c4ee370f8058ebe1cedca2eb8b439d96 | p@chr1:76127067..76127073, - |
| 5.04e-34 | FFCP PHASE1:Hg19::chr17:19648916..19648937,-#_c4ee370f8058ebe1cedca2eb8b439d96 | p10@ALDH3A1 |
| 5.04e-34 | FFCP PHASE2:Hg19::chr3:81671636..81671662,-#_c4ee370f8058ebe1cedca2eb8b439d96 | p@chr3:81671636..81671662, - |
| 5.04e-34 | FFCP PHASE2:Hg19::chr21:37376927..37376938,+#_c4ee370f8058ebe1cedca2eb8b439d96 | p@chr21:37376927..37376938, + |
| 5.04e-34 | FFCP PHASE2:Hg19::chr1:76127067..76127073,-#_c4ee370f8058ebe1cedca2eb8b439d96 | p@chr1:76127067..76127073, - |
| 5.04e-34 | FFCP PHASE2:Hg19::chr18:61254400..61254410,+#_c4ee370f8058ebe1cedca2eb8b439d96 | p8@SERPINB13 |
| 5.04e-34 | FFCP PHASE1:Hg19::chr21:37376927..37376938,+#_c4ee370f8058ebe1cedca2eb8b439d96 | p@chr21:37376927..37376938, + |
| 5.04e-34 | FFCP PHASE1:Hg19::chr18:61254400..61254410,+#_c4ee370f8058ebe1cedca2eb8b439d96 | p8@SERPINB13 |
| 7.05e-34 | FFCP PHASE2:Hg19::chr19:51517875..51517889,-#_190aa90d85b4608c6b3bbd23bb948d40 | p3@AK026045 |
| 7.05e-34 | FFCP PHASE1:Hg19::chr3:177508111..177508119,-#_190aa90d85b4608c6b3bbd23bb948d40 | p@chr3:177508111..177508119, - |
| 7.05e-34 | FFCP PHASE2:Hg19::chr11:101454246..101454255,-#_190aa90d85b4608c6b3bbd23bb948d40 | p11@TRPC6 |
| 7.05e-34 | FFCP PHASE1:Hg19::chr11:101454246..101454255,-#_190aa90d85b4608c6b3bbd23bb948d40 | p11@TRPC6 |
| 7.05e-34 | FFCP PHASE2:Hg19::chr2:178179611..178179619,-#_190aa90d85b4608c6b3bbd23bb948d40 | p4@ENST00000443132 |
| 7.05e-34 | FFCP PHASE1:Hg19::chr1:10980427..10980431,-#_190aa90d85b4608c6b3bbd23bb948d40 | p@chr1:10980427..10980431, - |
| 7.05e-34 | FFCP PHASE2:Hg19::chr3:193809263..193809278,+#_190aa90d85b4608c6b3bbd23bb948d40 | p1@ENST00000457815 |
| 7.05e-34 | FFCP PHASE2:Hg19::chr13:28542963..28542973,-#_190aa90d85b4608c6b3bbd23bb948d40 | p1@CU677005 |
| 7.05e-34 | FFCP PHASE2:Hg19::chr17:48072063..48072074,-#_190aa90d85b4608c6b3bbd23bb948d40 | p5@DLX3 |
| 7.05e-34 | FFCP PHASE1:Hg19::chr19:51517875..51517889,-#_190aa90d85b4608c6b3bbd23bb948d40 | p3@AK026045 |
| 7.05e-34 | FFCP PHASE1:Hg19::chr2:178179611..178179619,-#_190aa90d85b4608c6b3bbd23bb948d40 | p4@ENST00000443132 |
| 7.05e-34 | FFCP PHASE2:Hg19::chr1:18085798..18085805,+#_190aa90d85b4608c6b3bbd23bb948d40 | p@chr1:18085798..18085805, + |
| 7.05e-34 | FFCP PHASE1:Hg19::chr17:48072063..48072074,-#_190aa90d85b4608c6b3bbd23bb948d40 | p5@DLX3 |
| 7.05e-34 | FFCP PHASE2:Hg19::chr3:177508111..177508119,-#_190aa90d85b4608c6b3bbd23bb948d40 | p@chr3:177508111..177508119, - |
| 7.05e-34 | FFCP PHASE1:Hg19::chr3:193809263..193809278,+#_190aa90d85b4608c6b3bbd23bb948d40 | p1@ENST00000457815 |
| 7.05e-34 | FFCP PHASE1:Hg19::chr13:28542963..28542973,-#_190aa90d85b4608c6b3bbd23bb948d40 | p1@CU677005 |
| 7.05e-34 | FFCP PHASE2:Hg19::chr1:10980427..10980431,-#_190aa90d85b4608c6b3bbd23bb948d40 | p@chr1:10980427..10980431, - |
| 7.05e-34 | FFCP PHASE1:Hg19::chr1:18085798..18085805,+#_190aa90d85b4608c6b3bbd23bb948d40 | p@chr1:18085798..18085805, + |
| 4.32e-26 | FFCP PHASE1:Hg19::chr4:73248974..73249005,+#_142c976f3c6c0d873a9f3c1151e1abaf | p@chr4:73248974..73249005, + |
| 4.32e-26 | FFCP PHASE2:Hg19::chr5:1884077..1884085,+#_142c976f3c6c0d873a9f3c1151e1abaf | p1@ENST00000506335 |
| 4.32e-26 | FFCP PHASE1:Hg19::chr16:55600644..55600645,+#_142c976f3c6c0d873a9f3c1151e1abaf | p2@CAPNS2 |
| 4.32e-26 | FFCP PHASE1:Hg19::chr1:151826151..151826159,-#_142c976f3c6c0d873a9f3c1151e1abaf | p3@THEM5 |
| 4.32e-26 | FFCP PHASE1:Hg19::chr5:1884077..1884085,+#_142c976f3c6c0d873a9f3c1151e1abaf | p1@ENST00000506335 |
| 4.32e-26 | FFCP PHASE2:Hg19::chr4:73248974..73249005,+#_142c976f3c6c0d873a9f3c1151e1abaf | p@chr4:73248974..73249005, + |
| 4.32e-26 | FFCP PHASE2:Hg19::chr16:55600644..55600645,+#_142c976f3c6c0d873a9f3c1151e1abaf | p2@CAPNS2 |
| 4.32e-26 | FFCP PHASE2:Hg19::chr1:151826151..151826159,-#_142c976f3c6c0d873a9f3c1151e1abaf | p3@THEM5 |
| 5.56e-26 | FFCP PHASE2:Hg19::chr1:86921028..86921032,+#_ef8ed1bfde28b412b75d1e71803637dc | p@chr1:86921028..86921032, + |
| 5.56e-26 | FFCP PHASE1:Hg19::chr16:66906996..66906997,-#_ef8ed1bfde28b412b75d1e71803637dc | p@chr16:66906996..66906997, - |
| 5.56e-26 | FFCP PHASE2:Hg19::chr7:101448204..101448229,+#_ef8ed1bfde28b412b75d1e71803637dc | p@chr7:101448204..101448229, + |
| 5.56e-26 | FFCP PHASE1:Hg19::chr6:152792772..152792787,-#_ef8ed1bfde28b412b75d1e71803637dc | p@chr6:152792772..152792787, - |
| 5.56e-26 | FFCP PHASE2:Hg19::chr3:50367252..50367278,-#_ef8ed1bfde28b412b75d1e71803637dc | p@chr3:50367252..50367278, - |
| 5.56e-26 | FFCP PHASE2:Hg19::chr8:120233966..120233975,+#_ef8ed1bfde28b412b75d1e71803637dc | p@chr8:120233966..120233975, + |
| 5.56e-26 | FFCP PHASE1:Hg19::chr8:123875131..123875140,+#_ef8ed1bfde28b412b75d1e71803637dc | p25@ZHX2 |
| 5.56e-26 | FFCP PHASE1:Hg19::chr1:86921028..86921032,+#_ef8ed1bfde28b412b75d1e71803637dc | p@chr1:86921028..86921032, + |
| 5.56e-26 | FFCP PHASE1:Hg19::chr7:101448204..101448229,+#_ef8ed1bfde28b412b75d1e71803637dc | p@chr7:101448204..101448229, + |
| 5.56e-26 | FFCP PHASE2:Hg19::chr17:77774350..77774360,+#_ef8ed1bfde28b412b75d1e71803637dc | p@chr17:77774350..77774360, + |
| 5.56e-26 | FFCP PHASE1:Hg19::chr17:77774350..77774360,+#_ef8ed1bfde28b412b75d1e71803637dc | p@chr17:77774350..77774360, + |
| 5.56e-26 | FFCP PHASE1:Hg19::chr3:50367252..50367278,-#_ef8ed1bfde28b412b75d1e71803637dc | p@chr3:50367252..50367278, - |
| 5.56e-26 | FFCP PHASE1:Hg19::chr8:120233966..120233975,+#_ef8ed1bfde28b412b75d1e71803637dc | p@chr8:120233966..120233975, + |
| 5.56e-26 | FFCP PHASE2:Hg19::chr16:66906996..66906997,-#_ef8ed1bfde28b412b75d1e71803637dc | p@chr16:66906996..66906997, - |
| 5.56e-26 | FFCP PHASE2:Hg19::chr8:123875131..123875140,+#_ef8ed1bfde28b412b75d1e71803637dc | p25@ZHX2 |
| 5.56e-26 | FFCP PHASE2:Hg19::chr6:152792772..152792787,-#_ef8ed1bfde28b412b75d1e71803637dc | p@chr6:152792772..152792787, - |
| 5.56e-26 | FFCP PHASE2:Hg19::chr12:130647145..130647153,+#_ef8ed1bfde28b412b75d1e71803637dc | p3@FZD10 |
| 5.56e-26 | FFCP PHASE1:Hg19::chr12:130647145..130647153,+#_ef8ed1bfde28b412b75d1e71803637dc | p3@FZD10 |
| 7.14e-26 | FFCP PHASE2:Hg19::chr2:234526341..234526346,+#_6e2858db9e367b309f23bb3e7167514d | p1@UGT1A8 |
| 7.14e-26 | FFCP PHASE1:Hg19::chr2:234526341..234526346,+#_6e2858db9e367b309f23bb3e7167514d | p1@UGT1A8 |
| 9.18e-26 | FFCP PHASE2:Hg19::chr10:54259346..54259353,+#_4b01a0628f6f445894e8e097dbee7da4 | p@chr10:54259346..54259353, + |
| 9.18e-26 | FFCP PHASE2:Hg19::chr5:14437967..14437970,+#_4b01a0628f6f445894e8e097dbee7da4 | p@chr5:14437967..14437970, + |
| 9.18e-26 | FFCP PHASE1:Hg19::chr10:54259346..54259353,+#_4b01a0628f6f445894e8e097dbee7da4 | p@chr10:54259346..54259353, + |
| 9.18e-26 | FFCP PHASE2:Hg19::chr14:65406349..65406358,+#_4b01a0628f6f445894e8e097dbee7da4 | p@chr14:65406349..65406358, + |
| 9.18e-26 | FFCP PHASE2:Hg19::chr10:127591699..127591713,-#_4b01a0628f6f445894e8e097dbee7da4 | p@chr10:127591699..127591713, - |
| 9.18e-26 | FFCP PHASE2:Hg19::chr10:92754303..92754313,+#_4b01a0628f6f445894e8e097dbee7da4 | p2@ENST00000412362 |
| 9.18e-26 | FFCP PHASE1:Hg19::chr10:127591699..127591713,-#_4b01a0628f6f445894e8e097dbee7da4 | p@chr10:127591699..127591713, - |
| 9.18e-26 | FFCP PHASE1:Hg19::chr10:92754303..92754313,+#_4b01a0628f6f445894e8e097dbee7da4 | p2@ENST00000412362 |
| 9.18e-26 | FFCP PHASE1:Hg19::chr3:136885144..136885147,+#_4b01a0628f6f445894e8e097dbee7da4 | p@chr3:136885144..136885147, + |
| 9.18e-26 | FFCP PHASE1:Hg19::chr4:152117165..152117168,+#_4b01a0628f6f445894e8e097dbee7da4 | p@chr4:152117165..152117168, + |
| 9.18e-26 | FFCP PHASE1:Hg19::chr1:153430422..153430443,-#_4b01a0628f6f445894e8e097dbee7da4 | p3@S100A7 |
| 9.18e-26 | FFCP PHASE2:Hg19::chr1:118570948..118570964,-#_4b01a0628f6f445894e8e097dbee7da4 | p@chr1:118570948..118570964, - |
| 9.18e-26 | FFCP PHASE1:Hg19::chr5:14437967..14437970,+#_4b01a0628f6f445894e8e097dbee7da4 | p@chr5:14437967..14437970, + |
| 9.18e-26 | FFCP PHASE1:Hg19::chr14:65406349..65406358,+#_4b01a0628f6f445894e8e097dbee7da4 | p@chr14:65406349..65406358, + |
| 9.18e-26 | FFCP PHASE2:Hg19::chr3:136885144..136885147,+#_4b01a0628f6f445894e8e097dbee7da4 | p@chr3:136885144..136885147, + |
| 9.18e-26 | FFCP PHASE1:Hg19::chr1:118570948..118570964,-#_4b01a0628f6f445894e8e097dbee7da4 | p@chr1:118570948..118570964, - |
| 9.18e-26 | FFCP PHASE2:Hg19::chr4:152117165..152117168,+#_4b01a0628f6f445894e8e097dbee7da4 | p@chr4:152117165..152117168, + |
| 9.18e-26 | FFCP PHASE2:Hg19::chr1:153430422..153430443,-#_4b01a0628f6f445894e8e097dbee7da4 | p3@S100A7 |
| 3.11e-21 | FFCP PHASE2:Hg19::chr6:132455433..132455444,+#_1bf8a7ea60ca2e8d5c63083e7ccc8b12 | p4@ENST00000443303 |
| 3.11e-21 | FFCP PHASE1:Hg19::chr17:39674844..39674854,+#_1bf8a7ea60ca2e8d5c63083e7ccc8b12 | p@chr17:39674844..39674854, + |
| 3.11e-21 | FFCP PHASE1:Hg19::chr4:75180763..75180777,+#_1bf8a7ea60ca2e8d5c63083e7ccc8b12 | p@chr4:75180763..75180777, + |
| 3.11e-21 | FFCP PHASE2:Hg19::chr1:152572708..152572714,+#_1bf8a7ea60ca2e8d5c63083e7ccc8b12 | p1@LCE3C |
| 3.11e-21 | FFCP PHASE2:Hg19::chr5:11385573..11385583,-#_1bf8a7ea60ca2e8d5c63083e7ccc8b12 | p47@CTNND2 |
| 3.11e-21 | FFCP PHASE1:Hg19::chr6:132455433..132455444,+#_1bf8a7ea60ca2e8d5c63083e7ccc8b12 | p4@ENST00000443303 |
