UBERON:0000464: Difference between revisions
From FANTOM5_SSTAR
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Revision as of 16:56, 26 June 2012
| Name: | anatomical space | ||
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| Definition: | "Non-material anatomical entity of three dimensions, that is generated by morphogenetic or other physiologic processes; is surrounded by one or more anatomical structures; contains one or more organism substances or anatomical structures." [CARO:MAH] | ||
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| Alt_id: | UBERON:CARO_0000005-FBbt_00007017-FMA_5897-ZFA_0001643 | ||
| Subset: | upper_level |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000466(immaterial anatomical entity) |
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Children
| is a: | UBERON:0002224 (thoracic cavity),UBERON:0002553 (anatomical cavity),UBERON:0003199 (egg chamber),UBERON:0010064 (open anatomical space) |
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Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10011-101C2 (bladder, adult, pool1)
- 10015-101C6 (esophagus, adult, pool1)
- 10019-101D1 (lung, adult, pool1)
- 10020-101D2 (ovary, adult, pool1)
- 10025-101D7 (spleen, adult, pool1)
- 10026-101D8 (testis, adult, pool1)
- 10029-101E2 (trachea, adult, pool1)
- 10044-101F8 (spleen, fetal, pool1)
- 10049-101G4 (pancreas, adult, donor1)
- 10058-101H4 (trachea, fetal, donor1)
... further results Mouse (Mus musculus)
- 10011-101C2 (bladder, adult, pool1)
- 10015-101C6 (esophagus, adult, pool1)
- 10019-101D1 (lung, adult, pool1)
- 10020-101D2 (ovary, adult, pool1)
- 10025-101D7 (spleen, adult, pool1)
- 10026-101D8 (testis, adult, pool1)
- 10029-101E2 (trachea, adult, pool1)
- 10044-101F8 (spleen, fetal, pool1)
- 10049-101G4 (pancreas, adult, donor1)
- 10058-101H4 (trachea, fetal, donor1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000464 (anatomical space), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
No analysis results
