UBERON:0001896: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 3: | Line 3: | ||
|name=medulla oblongata | |name=medulla oblongata | ||
|namespace= | |namespace= | ||
|def="Organ component of neuraxis that has as its parts the medullary reticular formation, inferior olivary complex and cochlear nuclear complex, among other structures[FMA]. The medulla oblongata lies directly above the spinal cord and controls vital autonomic functions such as digestion, breathing and the control of heart rate[GO]." [FMA:62004, GO:0021550, Wikipedia: | |def="Organ component of neuraxis that has as its parts the medullary reticular formation, inferior olivary complex and cochlear nuclear complex, among other structures[FMA]. The medulla oblongata lies directly above the spinal cord and controls vital autonomic functions such as digestion, breathing and the control of heart rate[GO]." [FMA:62004, GO:0021550, Wikipedia:Bone_marrow_of_ovary_oblongata] | ||
|xref=AAO:0010486;;ABA:MY;;BTO:0000041;;EFO:0000924;; | |xref=AAO:0010486;;ABA:MY;;BTO:0000041;;EFO:0000924;;EHDAA2:0001088;;EHDAA:7588;;EMAPA:17550;;EV:0100275;;FMA:62004;;GAID:590;;http://upload.wikimedia.org/wikipedia/commons/thumb/6/6b/Illu_pituitary_pineal_glands.jpg/200px-Illu_pituitary_pineal_glands.jpg;;MA:0000206;;MAT:0000111;;MAT:0000367;;MESH:A.08.186.211.132.810.406;;MIAA:0000111;;ncithesaurus:Medulla_Oblongata;;NIF_GrossAnatomy:birnlex_957;;OpenCyc:Mx4rvVjxSJwpEbGdrcN5Y29ycA;;OpenCyc:Mx4rwCqnXJwpEbGdrcN5Y29ycA;;SCTID:279104005;;TAO:0000545;;VHOG:0000181;;XAO:0003100;;ZFA:0000545 | ||
|is_a=UBERON:0000064;;UBERON:0004121 | |is_a=UBERON:0000064;;UBERON:0004121;;UBERON:0010314 | ||
|synonym="bulb" BROAD [];;"bulbus" EXACT [FMA:62004, FMA:TA];;"medulla" BROAD [ABA:MY];;"metepencephalon" RELATED [FMA:62004] | |synonym="bulb" BROAD [];;"bulbus" EXACT [FMA:62004, FMA:TA];;"medulla" BROAD [ABA:MY];;"medulla oblonzata" RELATED LATIN [Wikipedia:Medulla_oblongata];;"metepencephalon" RELATED [FMA:62004] | ||
|comment= | |comment= | ||
|alt_id=UBERON:FMA_62004-MA_0000206-MIAA_0000111-XAO_0003100-ZFA_0000545 | |alt_id=UBERON:FMA_62004-MA_0000206-MIAA_0000111-XAO_0003100-ZFA_0000545 | ||
| Line 14: | Line 14: | ||
|obo_creation_date= | |obo_creation_date= | ||
|subset=uberon_slim;;vertebrate_core | |subset=uberon_slim;;vertebrate_core | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
|part_of= | |part_of= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;"spatially_disjoint_from" UBERON:0000988;;UBPROP:0000001 "Posterior portion of the hindbrain which controls respiration, heartbeat, digestion, and swallowing as well as some locomotor responses.[AAO]" xsd:string | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} | ||
Revision as of 17:00, 26 June 2012
| Name: | medulla oblongata | |
|---|---|---|
| Definition: | "Organ component of neuraxis that has as its parts the medullary reticular formation, inferior olivary complex and cochlear nuclear complex, among other structures[FMA]. The medulla oblongata lies directly above the spinal cord and controls vital autonomic functions such as digestion, breathing and the control of heart rate[GO]." [FMA:62004, GO:0021550, Wikipedia:Bone_marrow_of_ovary_oblongata] | |
| Xrefs: |
| |
| Synonyms: |
"bulb" BROAD [] "bulbus" EXACT [FMA:62004, FMA:TA] "medulla" BROAD [ABA:MY] "medulla oblonzata" RELATED LATIN [Wikipedia:Medulla_oblongata] "metepencephalon" RELATED [FMA:62004] | |
| Alt_id: | UBERON:FMA_62004-MA_0000206-MIAA_0000111-XAO_0003100-ZFA_0000545 | |
| Subset: |
uberon_slim vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000064(organ part),UBERON:0004121(ectoderm-derived structure),UBERON:0010314(structure with developmental contribution from neural crest) |
|---|
Children
| is a: | FF:10361-105F1 (medulla oblongata, newborn, donor10223) |
|---|---|
| derives from: | FF:0010038 (human medulla oblongata - adult sample),FF:0011284 (mouse medulla oblongata- adult sample),FF:0011465 (mouse medulla oblongata- neonate N30 sample) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10038-101F2 (medulla oblongata, adult, pool1)
- 10155-103A2 (medulla oblongata, adult, donor10252)
- 10174-103C3 (medulla oblongata - adult, donor10196)
- 10361-105F1 (medulla oblongata, newborn, donor10223)
- 1396-42A3 (medulla oblongata, neonate N30)
- 17-12C2 (medulla oblongata, adult)
Mouse (Mus musculus)
- 10038-101F2 (medulla oblongata, adult, pool1)
- 10155-103A2 (medulla oblongata, adult, donor10252)
- 10174-103C3 (medulla oblongata - adult, donor10196)
- 10361-105F1 (medulla oblongata, newborn, donor10223)
- 1396-42A3 (medulla oblongata, neonate N30)
- 17-12C2 (medulla oblongata, adult)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001896 (medulla oblongata), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
Property "Property value" (as page type) with input value "UBPROP:0000001 "Posterior portion of the hindbrain which controls respiration, heartbeat, digestion, and swallowing as well as some locomotor responses.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
