UBERON:0002780: Difference between revisions
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|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
|part_of= | |part_of= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
|is_obsolete= | |is_obsolete= | ||
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Revision as of 17:02, 26 June 2012
| Name: | regional part of forebrain | ||
|---|---|---|---|
| Definition: | "A regional part of brain that is part of a forebrain [Obol]." [OBOL:automatic] | ||
| Xrefs: |
| ||
| Synonyms: |
"anatomical structure of brain of forebrain" EXACT [OBOL:automatic] "biological structure of brain of forebrain" EXACT [OBOL:automatic] "brain anatomical structure of forebrain" EXACT [OBOL:automatic] "brain biological structure of forebrain" EXACT [OBOL:automatic] "forebrain anatomical structure of brain" EXACT [OBOL:automatic] "forebrain biological structure of brain" EXACT [OBOL:automatic] "forebrain brain anatomical structure" EXACT [OBOL:automatic] "forebrain brain biological structure" EXACT [OBOL:automatic] "forebrain neuraxis segment" EXACT [OBOL:automatic] "forebrain regional part of brain" EXACT [OBOL:automatic] "forebrain segment" EXACT [FMA:61996] "forebrain segment of brain" EXACT [OBOL:automatic] "neuraxis segment of forebrain" EXACT [OBOL:automatic] "regional part of brain of forebrain" EXACT [OBOL:automatic] "segment of brain of forebrain" EXACT [OBOL:automatic] "segment of forebrain" EXACT [NIF_GrossAnatomy:birnlex_1677] | ||
| Alt_id: | UBERON:NIF_GrossAnatomy_birnlex_1677-FMA_61996 |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0002616(regional part of brain) |
|---|
Children
| is a: | UBERON:0001893 (telencephalon),UBERON:0001894 (diencephalon),UBERON:0002743 (basal forebrain),UBERON:0002784 (regional part of diencephalon),UBERON:0002791 (regional part of telencephalon),UBERON:0006098 (basal nuclear complex) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10031-101E4 (temporal lobe, adult, pool1)
- 10032-101E5 (postcentral gyrus, adult, pool1)
- 10034-101E7 (parietal lobe, adult, pool1)
- 10035-101E8 (paracentral gyrus, adult, pool1)
- 10036-101E9 (occipital pole, adult, pool1)
- 10037-101F1 (nucleus accumbens, adult, pool1)
- 10039-101F3 (insula, adult, pool1)
- 10040-101F4 (frontal lobe, adult, pool1)
- 10042-101F6 (corpus callosum, adult, pool1)
- 10071-101I8 (duodenum, fetal, donor1)
... further results Mouse (Mus musculus)
- 10031-101E4 (temporal lobe, adult, pool1)
- 10032-101E5 (postcentral gyrus, adult, pool1)
- 10034-101E7 (parietal lobe, adult, pool1)
- 10035-101E8 (paracentral gyrus, adult, pool1)
- 10036-101E9 (occipital pole, adult, pool1)
- 10037-101F1 (nucleus accumbens, adult, pool1)
- 10039-101F3 (insula, adult, pool1)
- 10040-101F4 (frontal lobe, adult, pool1)
- 10042-101F6 (corpus callosum, adult, pool1)
- 10071-101I8 (duodenum, fetal, donor1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002780 (regional part of forebrain), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 6.11e-141 | FFCP PHASE2:Hg19::chr5:89977201..89977236,+#_bb3e0c092361a6f46c4ccb79166db5fc | p@chr5:89977201..89977236, + |
| 6.11e-141 | FFCP PHASE1:Hg19::chr5:89977201..89977236,+#_bb3e0c092361a6f46c4ccb79166db5fc | p@chr5:89977201..89977236, + |
| 2.38e-133 | FFCP PHASE2:Hg19::chr18:55019840..55019850,+#_53cefab13af2f92cff1404dfdc5e41df | p5@ST8SIA3 |
| 2.38e-133 | FFCP PHASE1:Hg19::chr18:55019840..55019850,+#_53cefab13af2f92cff1404dfdc5e41df | p5@ST8SIA3 |
| 6.8e-130 | FFCP PHASE2:Hg19::chr6:12717031..12717057,+#_883e41aecb00c17a9b96d25ae9b93906 | p5@PHACTR1 |
| 6.8e-130 | FFCP PHASE1:Hg19::chr6:12717031..12717057,+#_883e41aecb00c17a9b96d25ae9b93906 | p5@PHACTR1 |
| 2.27e-128 | FFCP PHASE1:Hg19::chr6:12716992..12717005,+#_0c71e1f193d43aa5bccc6a9581de8df0 | p3@PHACTR1 |
| 2.27e-128 | FFCP PHASE2:Hg19::chr6:12716992..12717005,+#_0c71e1f193d43aa5bccc6a9581de8df0 | p3@PHACTR1 |
| 6.39e-128 | FFCP PHASE2:Hg19::chr10:104178839..104178855,-#_9a941ee9ade52fa052ca10ae271dd45e | p6@PSD |
| 6.39e-128 | FFCP PHASE1:Hg19::chr10:104178839..104178855,-#_9a941ee9ade52fa052ca10ae271dd45e | p6@PSD |
| 7.77e-125 | FFCP PHASE2:Hg19::chr20:61806320..61806344,+#_851641970241f91cf0c875a8bddfa4ea | p@chr20:61806320..61806344, + |
| 7.77e-125 | FFCP PHASE1:Hg19::chr20:61806320..61806344,+#_851641970241f91cf0c875a8bddfa4ea | p@chr20:61806320..61806344, + |
| 3.82e-123 | FFCP PHASE1:Hg19::chr19:35633957..35633969,+#_616106d5fdd8b60e35031dfb84cc2ff7 | p2@FXYD7 |
| 3.82e-123 | FFCP PHASE2:Hg19::chr19:35633957..35633969,+#_616106d5fdd8b60e35031dfb84cc2ff7 | p2@FXYD7 |
| 1.09e-121 | FFCP PHASE1:Hg19::chr6:108487289..108487302,+#_ab66587f5788ebf1edd98f14aad9c019 | p1@NR2E1 |
| 1.09e-121 | FFCP PHASE2:Hg19::chr6:108487289..108487302,+#_ab66587f5788ebf1edd98f14aad9c019 | p1@NR2E1 |
| 2.87e-118 | FFCP PHASE1:Hg19::chr11:133402410..133402434,-#_b39b53c139ac68ca4e9f8870c59bc742 | p5@OPCML |
| 2.87e-118 | FFCP PHASE2:Hg19::chr11:133402410..133402434,-#_b39b53c139ac68ca4e9f8870c59bc742 | p5@OPCML |
| 7.25e-118 | FFCP PHASE1:Hg19::chr7:154002369..154002398,+#_48464271d13bde94561655f30f3be36f | p4@DPP6 |
| 7.25e-118 | FFCP PHASE2:Hg19::chr7:154002369..154002398,+#_48464271d13bde94561655f30f3be36f | p4@DPP6 |
| 8.87e-118 | FFCP PHASE1:Hg19::chrX:13835312..13835321,-#_12e01344722bff7e2877cde722b37fe8 | p9@GPM6B |
| 8.87e-118 | FFCP PHASE2:Hg19::chrX:13835312..13835321,-#_12e01344722bff7e2877cde722b37fe8 | p9@GPM6B |
| 1.66e-117 | FFCP PHASE1:Hg19::chr4:6514469..6514483,-#_88f279f0ad5106cf0ca7370aa1ae410b | p@chr4:6514469..6514483, - |
| 1.66e-117 | FFCP PHASE2:Hg19::chr4:6514469..6514483,-#_88f279f0ad5106cf0ca7370aa1ae410b | p@chr4:6514469..6514483, - |
| 2.75e-117 | FFCP PHASE2:Hg19::chr12:14133429..14133438,-#_678b92b378c95eab565dbf3394aa4f51 | p3@GRIN2B |
| 2.75e-117 | FFCP PHASE1:Hg19::chr12:14133429..14133438,-#_678b92b378c95eab565dbf3394aa4f51 | p3@GRIN2B |
| 2.82e-116 | FFCP PHASE1:Hg19::chr6:12717819..12717851,+#_4d66c9bb26e8fad3796a1ae60e6674ea | p4@PHACTR1 |
| 2.82e-116 | FFCP PHASE2:Hg19::chr6:12717819..12717851,+#_4d66c9bb26e8fad3796a1ae60e6674ea | p4@PHACTR1 |
| 2.93e-116 | FFCP PHASE2:Hg19::chr8:104831416..104831427,+#_823d06c094038e6be173f926016016d4 | p8@RIMS2 |
| 2.93e-116 | FFCP PHASE1:Hg19::chr8:104831416..104831427,+#_823d06c094038e6be173f926016016d4 | p8@RIMS2 |
| 5.58e-116 | FFCP PHASE1:Hg19::chr1:70033108..70033121,+#_d22c024a1ce73582599674a9f4528864 | p8@LRRC7 |
| 5.58e-116 | FFCP PHASE2:Hg19::chr1:70033108..70033121,+#_d22c024a1ce73582599674a9f4528864 | p8@LRRC7 |
| 6.52e-116 | FFCP PHASE2:Hg19::chr1:35391249..35391269,-#_290f0afc897587a80bac33f78b05b5ce | p4@DLGAP3 |
| 6.52e-116 | FFCP PHASE1:Hg19::chr1:35391249..35391269,-#_290f0afc897587a80bac33f78b05b5ce | p4@DLGAP3 |
| 6.61e-116 | FFCP PHASE2:Hg19::chr6:12717801..12717817,+#_e5920efc645524d3f78e1a5f36f20bee | p8@PHACTR1 |
| 6.61e-116 | FFCP PHASE1:Hg19::chr6:12717801..12717817,+#_e5920efc645524d3f78e1a5f36f20bee | p8@PHACTR1 |
| 5.28e-115 | FFCP PHASE1:Hg19::chr7:111424462..111424496,-#_bcfd0a7ecce05c81816c747e238dc95f | p3@DOCK4 |
| 5.28e-115 | FFCP PHASE2:Hg19::chr7:111424462..111424496,-#_bcfd0a7ecce05c81816c747e238dc95f | p3@DOCK4 |
| 5.97e-115 | FFCP PHASE2:Hg19::chr5:89936560..89936586,+#_fb9ebde650c940d62f668105733ef31b | p3@GPR98 |
| 5.97e-115 | FFCP PHASE1:Hg19::chr5:89936560..89936586,+#_fb9ebde650c940d62f668105733ef31b | p3@GPR98 |
| 1.02e-114 | FFCP PHASE2:Hg19::chr1:35391417..35391476,-#_397eabc18ca05b1e82c18da5a93caed3 | p2@DLGAP3 |
| 1.02e-114 | FFCP PHASE1:Hg19::chr1:35391417..35391476,-#_397eabc18ca05b1e82c18da5a93caed3 | p2@DLGAP3 |
| 1.06e-114 | FFCP PHASE2:Hg19::chr16:14280513..14280524,+#_c19b051e04680c6a47cb68284f33c6ea | p5@MKL2 |
| 1.06e-114 | FFCP PHASE1:Hg19::chr16:14280513..14280524,+#_c19b051e04680c6a47cb68284f33c6ea | p5@MKL2 |
| 8.42e-114 | FFCP PHASE1:Hg19::chr6:97753454..97753523,+#_f338abc3b73f5d127b940d7d630c9187 | p1@uc003ppd.1 |
| 8.42e-114 | FFCP PHASE2:Hg19::chr6:97753454..97753523,+#_f338abc3b73f5d127b940d7d630c9187 | p1@uc003ppd.1 |
| 3.53e-113 | FFCP PHASE1:Hg19::chr1:70035018..70035044,+#_d8041a0483dc3995a8fb6fb1f5ddebfa | p@chr1:70035018..70035044, + |
| 3.53e-113 | FFCP PHASE2:Hg19::chr1:70035018..70035044,+#_d8041a0483dc3995a8fb6fb1f5ddebfa | p@chr1:70035018..70035044, + |
| 5.22e-113 | FFCP PHASE2:Hg19::chr4:46392101..46392112,-#_67c3fb504f4882c93a6063da0aae4af7 | p6@GABRA2 |
| 5.22e-113 | FFCP PHASE1:Hg19::chr4:46392101..46392112,-#_67c3fb504f4882c93a6063da0aae4af7 | p6@GABRA2 |
| 5.23e-113 | FFCP PHASE2:Hg19::chr12:120242250..120242273,-#_f943cb9db6e815035326f93462dee195 | p6@CIT |
| 5.23e-113 | FFCP PHASE1:Hg19::chr12:120242250..120242273,-#_f943cb9db6e815035326f93462dee195 | p6@CIT |
| 1.08e-112 | FFCP PHASE2:Hg19::chr19:49016319..49016405,-#_54918fdd883d081b950aac0927c0bb55 | p2@LMTK3 |
| 1.08e-112 | FFCP PHASE1:Hg19::chr19:49016319..49016405,-#_54918fdd883d081b950aac0927c0bb55 | p2@LMTK3 |
| 1.26e-112 | FFCP PHASE2:Hg19::chrX:13835472..13835483,-#_2063de52055c969cade52f4241584e4f | p10@GPM6B |
| 1.26e-112 | FFCP PHASE1:Hg19::chrX:13835472..13835483,-#_2063de52055c969cade52f4241584e4f | p10@GPM6B |
| 1.39e-112 | FFCP PHASE2:Hg19::chr5:80255907..80255942,+#_427023e8222ac5b0c68a0ac0446b57cf | p@chr5:80255907..80255942, + |
| 1.39e-112 | FFCP PHASE1:Hg19::chr5:80255907..80255942,+#_427023e8222ac5b0c68a0ac0446b57cf | p@chr5:80255907..80255942, + |
| 1.42e-112 | FFCP PHASE1:Hg19::chr17:61194578..61194599,+#_1ae437e3a9269f6501f55b120b40028d | p@chr17:61194578..61194599, + |
| 1.42e-112 | FFCP PHASE2:Hg19::chr17:61194578..61194599,+#_1ae437e3a9269f6501f55b120b40028d | p@chr17:61194578..61194599, + |
| 1.66e-112 | FFCP PHASE2:Hg19::chr5:89977181..89977199,+#_7a13259503c4fbf4fb9984e4b4148ca8 | p@chr5:89977181..89977199, + |
| 1.66e-112 | FFCP PHASE1:Hg19::chr5:89977181..89977199,+#_7a13259503c4fbf4fb9984e4b4148ca8 | p@chr5:89977181..89977199, + |
| 6.89e-112 | FFCP PHASE2:Hg19::chr7:94843638..94843650,-#_eb1ba38ce5e5de2ee418777742748d0c | p1@ENST00000417881 |
| 6.89e-112 | FFCP PHASE1:Hg19::chr7:94843638..94843650,-#_eb1ba38ce5e5de2ee418777742748d0c | p1@ENST00000417881 |
| 7.85e-112 | FFCP PHASE1:Hg19::chr7:154002341..154002355,+#_9c4844885c0be94cee42a05800748200 | p6@DPP6 |
| 7.85e-112 | FFCP PHASE2:Hg19::chr7:154002341..154002355,+#_9c4844885c0be94cee42a05800748200 | p6@DPP6 |
| 1.02e-111 | FFCP PHASE1:Hg19::chr5:27038708..27038730,-#_32a855aaf31babc110be11a7d2acb99d | p2@CDH9 |
| 1.02e-111 | FFCP PHASE2:Hg19::chr5:27038708..27038730,-#_32a855aaf31babc110be11a7d2acb99d | p2@CDH9 |
| 1.42e-111 | FFCP PHASE2:Hg19::chr2:3134361..3134374,-#_a6734a59734ae4ee924fbb2cf316590b | p@chr2:3134361..3134374, - |
| 1.42e-111 | FFCP PHASE1:Hg19::chr2:3134361..3134374,-#_a6734a59734ae4ee924fbb2cf316590b | p@chr2:3134361..3134374, - |
| 1.94e-111 | FFCP PHASE2:Hg19::chr6:155538132..155538147,+#_ea42db352a7cb45a33de06e1908b295a | p3@TIAM2 |
| 1.94e-111 | FFCP PHASE1:Hg19::chr6:155538132..155538147,+#_ea42db352a7cb45a33de06e1908b295a | p3@TIAM2 |
| 3.18e-111 | FFCP PHASE2:Hg19::chr3:124103620..124103704,+#_bc52a119b7ca265d17c4efd1727b29d2 | p1@KALRN |
| 3.18e-111 | FFCP PHASE1:Hg19::chr3:124103620..124103704,+#_bc52a119b7ca265d17c4efd1727b29d2 | p1@KALRN |
| 4.18e-111 | FFCP PHASE1:Hg19::chr1:177134053..177134069,-#_5833ea0f8581577dab17ce713d31eca2 | p4@ASTN1 |
| 4.18e-111 | FFCP PHASE2:Hg19::chr1:177134053..177134069,-#_5833ea0f8581577dab17ce713d31eca2 | p4@ASTN1 |
| 5.69e-111 | FFCP PHASE1:Hg19::chr11:132982177..132982181,-#_1eb49ab3535e69a550ce5e0194f015d7 | p@chr11:132982177..132982181, - |
| 5.69e-111 | FFCP PHASE2:Hg19::chr11:132982177..132982181,-#_1eb49ab3535e69a550ce5e0194f015d7 | p@chr11:132982177..132982181, - |
| 7.54e-111 | FFCP PHASE2:Hg19::chr8:63161215..63161235,+#_14d780526ecd38295c95e7fbfd2ee861 | p5@NKAIN3 |
| 7.54e-111 | FFCP PHASE1:Hg19::chr8:63161215..63161235,+#_14d780526ecd38295c95e7fbfd2ee861 | p5@NKAIN3 |
| 1.27e-110 | FFCP PHASE2:Hg19::chr12:99548462..99548482,-#_e73e8b07f1f0635e8c8d2965df79dfe4 | p9@ANKS1B |
| 1.27e-110 | FFCP PHASE1:Hg19::chr12:99548462..99548482,-#_e73e8b07f1f0635e8c8d2965df79dfe4 | p9@ANKS1B |
| 1.38e-110 | FFCP PHASE1:Hg19::chr15:80735246..80735321,+#_dc6cbf30516c6216c08764e2a29586e1 | p3@ARNT2 |
| 1.38e-110 | FFCP PHASE2:Hg19::chr15:80735246..80735321,+#_dc6cbf30516c6216c08764e2a29586e1 | p3@ARNT2 |
| 2.12e-110 | FFCP PHASE2:Hg19::chr20:1791316..1791339,-#_3e0cbabaf214f64620486f8e27871cef | p@chr20:1791316..1791339, - |
| 2.12e-110 | FFCP PHASE1:Hg19::chr20:1791316..1791339,-#_3e0cbabaf214f64620486f8e27871cef | p@chr20:1791316..1791339, - |
| 2.27e-110 | FFCP PHASE2:Hg19::chr9:112629781..112629806,+#_30735919c820fbed52b89ab812435c64 | p14@PALM2-AKAP2 |
| 2.27e-110 | FFCP PHASE1:Hg19::chr9:112629781..112629806,+#_30735919c820fbed52b89ab812435c64 | p14@PALM2-AKAP2 |
| 3.45e-110 | FFCP PHASE1:Hg19::chrX:13835398..13835429,-#_9d7ce64479a73e35a5f5143bae3903e5 | p6@GPM6B |
| 3.45e-110 | FFCP PHASE2:Hg19::chrX:13835398..13835429,-#_9d7ce64479a73e35a5f5143bae3903e5 | p6@GPM6B |
| 4.23e-110 | FFCP PHASE1:Hg19::chr2:74612644..74612670,+#_554916425bbaaaf9e77622fa98c3e6e7 | p1@ENST00000412957 |
| 4.23e-110 | FFCP PHASE2:Hg19::chr2:74612644..74612670,+#_554916425bbaaaf9e77622fa98c3e6e7 | p1@ENST00000412957 |
| 5.12e-110 | FFCP PHASE2:Hg19::chr12:99548342..99548354,-#_74e7ca1c54eaa288a5c71dc3ad61e4ee | p7@ANKS1B |
| 5.12e-110 | FFCP PHASE1:Hg19::chr12:99548342..99548354,-#_74e7ca1c54eaa288a5c71dc3ad61e4ee | p7@ANKS1B |
| 7.19e-110 | FFCP PHASE2:Hg19::chr20:1791288..1791304,-#_bc435cfa4d063b87cc86ad58c963dab4 | p@chr20:1791288..1791304, - |
| 7.19e-110 | FFCP PHASE1:Hg19::chr20:1791288..1791304,-#_bc435cfa4d063b87cc86ad58c963dab4 | p@chr20:1791288..1791304, - |
| 9.49e-110 | FFCP PHASE2:Hg19::chr21:43917145..43917190,-#_35bcde3fd1dc9c8d4f47cf9e5fb2cc56 | p@chr21:43917145..43917190, - |
| 9.49e-110 | FFCP PHASE1:Hg19::chr21:43917145..43917190,-#_35bcde3fd1dc9c8d4f47cf9e5fb2cc56 | p@chr21:43917145..43917190, - |
| 1.01e-109 | FFCP PHASE2:Hg19::chr6:155538093..155538109,+#_e13651add36fc436e5f996cb114f8529 | p2@TIAM2 |
| 1.01e-109 | FFCP PHASE1:Hg19::chr6:155538093..155538109,+#_e13651add36fc436e5f996cb114f8529 | p2@TIAM2 |
