UBERON:0005281: Difference between revisions
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|def="a set of structures containing cerebrospinal fluid in the brain. It is continuous with the central canal of the spinal cord." [Wikipedia:Ventricular_system] | |def="a set of structures containing cerebrospinal fluid in the brain. It is continuous with the central canal of the spinal cord." [Wikipedia:Ventricular_system] | ||
|xref=EFO:0003650;;EHDAA2:0004362;;EV:0100306;;FMA:242675;;http://upload.wikimedia.org/wikipedia/commons/thumb/7/7d/Gray734.png/200px-Gray734.png;;TAO:0001261;;ZFA:0001261 | |xref=EFO:0003650;;EHDAA2:0004362;;EV:0100306;;FMA:242675;;http://upload.wikimedia.org/wikipedia/commons/7/7d/Gray734.png;;http://upload.wikimedia.org/wikipedia/commons/thumb/7/7d/Gray734.png/200px-Gray734.png;;TAO:0001261;;ZFA:0001261 | ||
|is_a=UBERON:0000467;;UBERON:0004121 | |is_a=UBERON:0000467;;UBERON:0004121 | ||
|synonym="ventricular system" EXACT [ZFA:0001261];;"ventricular system of neuraxis" EXACT [FMA:242675] | |synonym="ventricular system" EXACT [ZFA:0001261];;"ventricular system of neuraxis" EXACT [FMA:242675] | ||
| Line 14: | Line 14: | ||
|obo_creation_date= | |obo_creation_date= | ||
|subset=vertebrate_core | |subset=vertebrate_core | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
|part_of= | |part_of= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} | ||
Revision as of 17:06, 26 June 2012
| Name: | ventricular system of central nervous system | ||
|---|---|---|---|
| Definition: | "a set of structures containing cerebrospinal fluid in the brain. It is continuous with the central canal of the spinal cord." [Wikipedia:Ventricular_system] | ||
| Xrefs: |
| ||
| Synonyms: |
"ventricular system" EXACT [ZFA:0001261] "ventricular system of neuraxis" EXACT [FMA:242675] | ||
| Subset: | vertebrate_core |
Gray734.png]
200px-Gray734.png]
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000467(anatomical system),UBERON:0004121(ectoderm-derived structure) |
|---|
Children
| part of: | UBERON:0005282 (ventricular system of brain),UBERON:0013150 (future brain vesicle) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 11492-119E7 (Fibroblast - Choroid Plexus, donor1)
- 11572-120E6 (Fibroblast - Choroid Plexus, donor2)
- 11653-122E6 (Fibroblast - Choroid Plexus, donor3)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005281 (ventricular system of central nervous system), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 3.29e-195 | FFCP PHASE2:Hg19::chr1:201708474..201708479,+#_3741cb8aee2f3b69597dfda9491ee555 | p58@NAV1 |
| 3.29e-195 | FFCP PHASE2:Hg19::chr1:201708485..201708494,+#_3741cb8aee2f3b69597dfda9491ee555 | p55@NAV1 |
| 3.29e-195 | FFCP PHASE1:Hg19::chr1:201708474..201708479,+#_3741cb8aee2f3b69597dfda9491ee555 | p58@NAV1 |
| 3.29e-195 | FFCP PHASE1:Hg19::chr1:201708485..201708494,+#_3741cb8aee2f3b69597dfda9491ee555 | p55@NAV1 |
| 8.99e-131 | FFCP PHASE2:Hg19::chr8:24997361..24997368,-#_93b24e18d1e343beb7cc5bbb53b48fc5 | p@chr8:24997361..24997368, - |
| 8.99e-131 | FFCP PHASE1:Hg19::chr8:24997361..24997368,-#_93b24e18d1e343beb7cc5bbb53b48fc5 | p@chr8:24997361..24997368, - |
| 3.96e-66 | FFCP PHASE1:Hg19::chr17:75471711..75471726,+#_b48fd2ca66e6eeb8175c562753cc824b | p73@SEPT9 |
| 3.96e-66 | FFCP PHASE2:Hg19::chr3:146517344..146517356,+#_b48fd2ca66e6eeb8175c562753cc824b | p@chr3:146517344..146517356, + |
| 3.96e-66 | FFCP PHASE1:Hg19::chr3:146517344..146517356,+#_b48fd2ca66e6eeb8175c562753cc824b | p@chr3:146517344..146517356, + |
| 3.96e-66 | FFCP PHASE2:Hg19::chr17:75471711..75471726,+#_b48fd2ca66e6eeb8175c562753cc824b | p73@SEPT9 |
| 4.77e-57 | FFCP PHASE1:Hg19::chr12:15941738..15941768,+#_761f28eebca0e3a42f39ce4365c80c5d | p@chr12:15941738..15941768, + |
| 4.77e-57 | FFCP PHASE2:Hg19::chr12:15941738..15941768,+#_761f28eebca0e3a42f39ce4365c80c5d | p@chr12:15941738..15941768, + |
| 6.36e-57 | FFCP PHASE2:Hg19::chr5:149537789..149537803,-#_071012f63db5077158ee580037c09b43 | p@chr5:149537789..149537803, - |
| 6.36e-57 | FFCP PHASE1:Hg19::chr5:149537789..149537803,-#_071012f63db5077158ee580037c09b43 | p@chr5:149537789..149537803, - |
| 8.82e-51 | FFCP PHASE1:Hg19::chr14:76072096..76072107,+#_663482a148772dd91003d7ef48796a87 | p7@FLVCR2 |
| 8.82e-51 | FFCP PHASE1:Hg19::chr10:105677427..105677438,-#_663482a148772dd91003d7ef48796a87 | p7@OBFC1 |
| 8.82e-51 | FFCP PHASE2:Hg19::chr14:76072096..76072107,+#_663482a148772dd91003d7ef48796a87 | p7@FLVCR2 |
| 8.82e-51 | FFCP PHASE2:Hg19::chr10:105677427..105677438,-#_663482a148772dd91003d7ef48796a87 | p7@OBFC1 |
| 5.15e-50 | FFCP PHASE1:Hg19::chr16:65159735..65159744,-#_8e625d227aa525ef4a846aadaff9fbcb | p@chr16:65159735..65159744, - |
| 5.15e-50 | FFCP PHASE2:Hg19::chr16:65159735..65159744,-#_8e625d227aa525ef4a846aadaff9fbcb | p@chr16:65159735..65159744, - |
| 1.22e-44 | FFCP PHASE1:Hg19::chr5:158523468..158523481,-#_eaebbed70e7658f58847860f467e1e2a | p20@EBF1 |
| 1.22e-44 | FFCP PHASE2:Hg19::chr5:158523468..158523481,-#_eaebbed70e7658f58847860f467e1e2a | p20@EBF1 |
| 1.53e-44 | FFCP PHASE1:Hg19::chr11:60680190..60680212,+#_29c2016a82f8557226818f50360e846f | p@chr11:60680190..60680212, + |
| 1.53e-44 | FFCP PHASE2:Hg19::chr11:60680190..60680212,+#_29c2016a82f8557226818f50360e846f | p@chr11:60680190..60680212, + |
| 5.99e-41 | FFCP PHASE1:Hg19::chr9:132390755..132390781,+#_aafc4678a1d288ddbad5e23e064ca2e3 | p7@METTL11A |
| 5.99e-41 | FFCP PHASE2:Hg19::chr9:132390755..132390781,+#_aafc4678a1d288ddbad5e23e064ca2e3 | p7@METTL11A |
| 8.98e-41 | FFCP PHASE1:Hg19::chr1:19778678..19778689,-#_b0301d1a254ca2994aa5ab61e8e018b8 | p@chr1:19778678..19778689, - |
| 8.98e-41 | FFCP PHASE2:Hg19::chr1:19778678..19778689,-#_b0301d1a254ca2994aa5ab61e8e018b8 | p@chr1:19778678..19778689, - |
| 1.34e-40 | FFCP PHASE1:Hg19::chr4:111397216..111397250,+#_d8cdbaf6456fc2287cfb01d0962b7e75 | p8@ENPEP |
| 1.34e-40 | FFCP PHASE2:Hg19::chr4:111397216..111397250,+#_d8cdbaf6456fc2287cfb01d0962b7e75 | p8@ENPEP |
| 9.84e-37 | FFCP PHASE2:Hg19::chr11:44331735..44331747,-#_0cfffbd741f0121617d6a9f92cb554cc | p3@ALX4 |
| 9.84e-37 | FFCP PHASE1:Hg19::chr11:44331735..44331747,-#_0cfffbd741f0121617d6a9f92cb554cc | p3@ALX4 |
| 1.18e-36 | FFCP PHASE1:Hg19::chr1:236203048..236203055,-#_57d1e74025e8095242a90e3473de9052 | p@chr1:236203048..236203055, - |
| 1.18e-36 | FFCP PHASE2:Hg19::chr1:236203048..236203055,-#_57d1e74025e8095242a90e3473de9052 | p@chr1:236203048..236203055, - |
| 1.42e-36 | FFCP PHASE2:Hg19::chr6:72970377..72970387,+#_69bb1a7afaa3f33cc8fc609be64c8034 | p20@RIMS1 |
| 1.42e-36 | FFCP PHASE1:Hg19::chr6:72970377..72970387,+#_69bb1a7afaa3f33cc8fc609be64c8034 | p20@RIMS1 |
| 1.7e-36 | FFCP PHASE2:Hg19::chr14:87636652..87636657,-#_fabfec2b9c4b33367acade50b95629c7 | p@chr14:87636652..87636657, - |
| 1.7e-36 | FFCP PHASE1:Hg19::chr14:87636652..87636657,-#_fabfec2b9c4b33367acade50b95629c7 | p@chr14:87636652..87636657, - |
| 2.04e-36 | FFCP PHASE1:Hg19::chr14:61654271..61654282,+#_64f0f95c3e2592166233cc62b506bc46 | p30@PRKCH |
| 2.04e-36 | FFCP PHASE2:Hg19::chr14:61654271..61654282,+#_64f0f95c3e2592166233cc62b506bc46 | p30@PRKCH |
| 1.11e-34 | FFCP PHASE1:Hg19::chr12:108732917..108732935,-#_f2add0d5381592a5f6fc29e446f0bfb2 | p5@CMKLR1 |
| 1.11e-34 | FFCP PHASE2:Hg19::chr12:108732917..108732935,-#_f2add0d5381592a5f6fc29e446f0bfb2 | p5@CMKLR1 |
| 5.04e-34 | FFCP PHASE2:Hg19::chr9:130830760..130830783,+#_e7f5b1efc657a79a1aa51b2bcca21568 | p11@SLC25A25 |
| 5.04e-34 | FFCP PHASE1:Hg19::chr9:130830760..130830783,+#_e7f5b1efc657a79a1aa51b2bcca21568 | p11@SLC25A25 |
| 7.05e-34 | FFCP PHASE2:Hg19::chr6:36906253..36906260,-#_8ddb6ce5ca52a42331ff6bb35558db67 | p@chr6:36906253..36906260, - |
| 7.05e-34 | FFCP PHASE2:Hg19::chr2:231988425..231988433,-#_8ddb6ce5ca52a42331ff6bb35558db67 | p11@HTR2B |
| 7.05e-34 | FFCP PHASE2:Hg19::chr8:128902610..128902630,+#_8ddb6ce5ca52a42331ff6bb35558db67 | p17@PVT1 |
| 7.05e-34 | FFCP PHASE1:Hg19::chr8:128902610..128902630,+#_8ddb6ce5ca52a42331ff6bb35558db67 | p17@PVT1 |
| 7.05e-34 | FFCP PHASE1:Hg19::chr15:95869480..95869493,+#_8ddb6ce5ca52a42331ff6bb35558db67 | p@chr15:95869480..95869493, + |
| 7.05e-34 | FFCP PHASE1:Hg19::chr6:36906253..36906260,-#_8ddb6ce5ca52a42331ff6bb35558db67 | p@chr6:36906253..36906260, - |
| 7.05e-34 | FFCP PHASE1:Hg19::chr2:231988425..231988433,-#_8ddb6ce5ca52a42331ff6bb35558db67 | p11@HTR2B |
| 7.05e-34 | FFCP PHASE2:Hg19::chr15:95869480..95869493,+#_8ddb6ce5ca52a42331ff6bb35558db67 | p@chr15:95869480..95869493, + |
| 1.37e-31 | FFCP PHASE1:Hg19::chr2:223536233..223536234,+#_8a42b8b7ac1a3c0548343dca3b8ad372 | p3@MOGAT1 |
| 1.37e-31 | FFCP PHASE2:Hg19::chr2:223536233..223536234,+#_8a42b8b7ac1a3c0548343dca3b8ad372 | p3@MOGAT1 |
| 4.71e-31 | FFCP PHASE1:Hg19::chr5:134260455..134260471,-#_f6c6ce062d06c5e1a37cc1c0ab89dbd6 | p@chr5:134260455..134260471, - |
| 4.71e-31 | FFCP PHASE1:Hg19::chr3:147127961..147127972,+#_f6c6ce062d06c5e1a37cc1c0ab89dbd6 | p3@AB464362 |
| 4.71e-31 | FFCP PHASE2:Hg19::chr5:134260455..134260471,-#_f6c6ce062d06c5e1a37cc1c0ab89dbd6 | p@chr5:134260455..134260471, - |
| 4.71e-31 | FFCP PHASE2:Hg19::chr3:147127961..147127972,+#_f6c6ce062d06c5e1a37cc1c0ab89dbd6 | p3@AB464362 |
| 6.96e-30 | FFCP PHASE1:Hg19::chr16:65159902..65159909,-#_0be7bad9a53beccc9bb841fb0043667f | p@chr16:65159902..65159909, - |
| 6.96e-30 | FFCP PHASE2:Hg19::chr16:65159902..65159909,-#_0be7bad9a53beccc9bb841fb0043667f | p@chr16:65159902..65159909, - |
| 1.08e-29 | FFCP PHASE2:Hg19::chr5:149537807..149537827,-#_483116e6f39bcf5b28a8a513790921b3 | p@chr5:149537807..149537827, - |
| 1.08e-29 | FFCP PHASE1:Hg19::chr5:149537807..149537827,-#_483116e6f39bcf5b28a8a513790921b3 | p@chr5:149537807..149537827, - |
| 9.09e-27 | FFCP PHASE1:Hg19::chr3:147124547..147124563,-#_b124b6599e6a9fc6434d8f39117d9f6a | p6@ZIC4 |
| 9.09e-27 | FFCP PHASE2:Hg19::chr3:147124547..147124563,-#_b124b6599e6a9fc6434d8f39117d9f6a | p6@ZIC4 |
| 1.67e-26 | FFCP PHASE1:Hg19::chr2:238066183..238066194,-#_c52c5b0cbb9f9db9a151c8d74a898e73 | p@chr2:238066183..238066194, - |
| 1.67e-26 | FFCP PHASE2:Hg19::chr2:238066183..238066194,-#_c52c5b0cbb9f9db9a151c8d74a898e73 | p@chr2:238066183..238066194, - |
| 4.08e-26 | FFCP PHASE2:Hg19::chr5:40910094..40910097,+#_fa0e3e87cb63b32e09a4706bba91703a | p@chr5:40910094..40910097, + |
| 4.08e-26 | FFCP PHASE1:Hg19::chr5:40910094..40910097,+#_fa0e3e87cb63b32e09a4706bba91703a | p@chr5:40910094..40910097, + |
| 5.56e-26 | FFCP PHASE2:Hg19::chr11:61634768..61634777,+#_49e2b8788d6d6dbe3f264704de8cab27 | p@chr11:61634768..61634777, + |
| 5.56e-26 | FFCP PHASE1:Hg19::chr11:61634768..61634777,+#_49e2b8788d6d6dbe3f264704de8cab27 | p@chr11:61634768..61634777, + |
| 7.14e-26 | FFCP PHASE1:Hg19::chr8:58658778..58658788,+#_3d345c373eee9711e4f31e47881677bc | p2@ENST00000518934, p2@uc003xti.1 |
| 7.14e-26 | FFCP PHASE2:Hg19::chr8:58658778..58658788,+#_3d345c373eee9711e4f31e47881677bc | p2@ENST00000518934, p2@uc003xti.1 |
| 9.18e-26 | FFCP PHASE2:Hg19::chr6:129504885..129504896,-#_ebcba8c3438d6828f27abf8fc1fcefcc | p@chr6:129504885..129504896, - |
| 9.18e-26 | FFCP PHASE1:Hg19::chr6:129504885..129504896,-#_ebcba8c3438d6828f27abf8fc1fcefcc | p@chr6:129504885..129504896, - |
| 1.44e-25 | FFCP PHASE2:Hg19::chr3:147127358..147127369,+#_11aec04f87425957a88a744f0c6b24b8 | p16@ZIC1 |
| 1.44e-25 | FFCP PHASE2:Hg19::chr12:279773..279812,+#_11aec04f87425957a88a744f0c6b24b8 | p@chr12:279773..279812, + |
| 1.44e-25 | FFCP PHASE1:Hg19::chr3:147127358..147127369,+#_11aec04f87425957a88a744f0c6b24b8 | p16@ZIC1 |
| 1.44e-25 | FFCP PHASE1:Hg19::chr12:279773..279812,+#_11aec04f87425957a88a744f0c6b24b8 | p@chr12:279773..279812, + |
| 2.37e-25 | FFCP PHASE2:Hg19::chr3:147112699..147112713,-#_a934675208ab70ad73a579e955377373 | p@chr3:147112699..147112713, - |
| 2.37e-25 | FFCP PHASE1:Hg19::chr3:147112699..147112713,-#_a934675208ab70ad73a579e955377373 | p@chr3:147112699..147112713, - |
| 1.15e-24 | FFCP PHASE1:Hg19::chr1:47903765..47903783,+#_db7978b4ca6d5985be63c0abdfc52459 | p5@FOXD2 |
| 1.15e-24 | FFCP PHASE2:Hg19::chr1:47903765..47903783,+#_db7978b4ca6d5985be63c0abdfc52459 | p5@FOXD2 |
| 1.45e-24 | FFCP PHASE1:Hg19::chr9:16138889..16138902,-#_4728fbf1cb0ff564aa21b08ab6584f46 | p@chr9:16138889..16138902, - |
| 1.45e-24 | FFCP PHASE2:Hg19::chr9:16138889..16138902,-#_4728fbf1cb0ff564aa21b08ab6584f46 | p@chr9:16138889..16138902, - |
| 2.97e-24 | FFCP PHASE2:Hg19::chr2:192128035..192128057,+#_b5a650a0cd218f102ef2a30765fab4b7 | p6@MYO1B |
| 2.97e-24 | FFCP PHASE1:Hg19::chr2:192128035..192128057,+#_b5a650a0cd218f102ef2a30765fab4b7 | p6@MYO1B |
| 3.34e-24 | FFCP PHASE2:Hg19::chr3:147088197..147088208,-#_33eb300dc80457677f46ad35843b178b | p@chr3:147088197..147088208, - |
| 3.34e-24 | FFCP PHASE1:Hg19::chr3:147088197..147088208,-#_33eb300dc80457677f46ad35843b178b | p@chr3:147088197..147088208, - |
| 5.35e-24 | FFCP PHASE2:Hg19::chr17:1013251..1013277,-#_1ae99e2927b544d0752e227dff9385a7 | p@chr17:1013251..1013277, - |
| 5.35e-24 | FFCP PHASE1:Hg19::chr17:1013251..1013277,-#_1ae99e2927b544d0752e227dff9385a7 | p@chr17:1013251..1013277, - |
| 1.01e-23 | FFCP PHASE2:Hg19::chr11:60640905..60640919,+#_76ef44802de1d249d62edd5d46d4cdc2 | p@chr11:60640905..60640919, + |
| 1.01e-23 | FFCP PHASE1:Hg19::chr11:60640905..60640919,+#_76ef44802de1d249d62edd5d46d4cdc2 | p@chr11:60640905..60640919, + |
| 1.42e-23 | FFCP PHASE1:Hg19::chr17:75446774..75446783,+#_519143a6905cde5a7a7af5f3f631a50a | p49@SEPT9 |
| 1.42e-23 | FFCP PHASE2:Hg19::chr17:75446774..75446783,+#_519143a6905cde5a7a7af5f3f631a50a | p49@SEPT9 |
| 3.49e-23 | FFCP PHASE2:Hg19::chr11:8832119..8832124,-#_405eeeffaf131cc77dbfe503cf59f2f2 | p30@ST5 |
| 3.49e-23 | FFCP PHASE1:Hg19::chr11:8832119..8832124,-#_405eeeffaf131cc77dbfe503cf59f2f2 | p30@ST5 |
| 6.84e-23 | FFCP PHASE2:Hg19::chr6:55739244..55739256,-#_8a15131ecdcbaa77eec684e833253bf8 | p2@AB527577, p2@CU693346 |
| 6.84e-23 | FFCP PHASE1:Hg19::chr6:55739244..55739256,-#_8a15131ecdcbaa77eec684e833253bf8 | p2@AB527577, p2@CU693346 |
| 2.06e-22 | FFCP PHASE1:Hg19::chr11:60610073..60610090,+#_afd875dc653f3aa1d2ea62f659caeec5 | p6@CCDC86 |
| 2.06e-22 | FFCP PHASE2:Hg19::chr11:60610073..60610090,+#_afd875dc653f3aa1d2ea62f659caeec5 | p6@CCDC86 |
