UBERON:0007213: Difference between revisions
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|xref=EFO:0003572;;EHDAA2:0000735;;EMAPA:16169;;ZFA:0000787 | |xref=EFO:0003572;;EHDAA2:0000735;;EMAPA:16100;;EMAPA:16169;;EMAPA:16271;;EMAPA_RETIRED:16271;;TAO:0000787;;ZFA:0000787 | ||
|is_a=UBERON: | |is_a=UBERON:0005253;;UBERON:0010313 | ||
|synonym="head mesenchyme from cranial neural crest" EXACT [];;"head mesenchyme from neural crest" EXACT [EHDAA2:0000735] | |synonym="head mesenchyme from cranial neural crest" EXACT [];;"head mesenchyme from neural crest" EXACT [EHDAA2:0000735] | ||
|comment= | |comment= | ||
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|obo_creation_date= | |obo_creation_date= | ||
|subset=vertebrate_core | |subset=vertebrate_core | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
Revision as of 17:07, 26 June 2012
| Name: | mesenchyme derived from head neural crest | ||
|---|---|---|---|
| Xrefs: |
| ||
| Synonyms: |
"head mesenchyme from cranial neural crest" EXACT [] "head mesenchyme from neural crest" EXACT [EHDAA2:0000735] | ||
| Subset: | vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0005253(head mesenchyme),UBERON:0010313(neural crest-derived structure) |
|---|
Children
| is a: | UBERON:0003314 (eye mesenchyme),UBERON:0005565 (facio-acoustic neural crest),UBERON:0009501 (mesenchyme of fronto-nasal process),UBERON:0009920 (optic neural crest),UBERON:0010258 (mesenchyme from rhombencephalic neural crest) |
|---|---|
| develops from: | UBERON:0001777 (substantia propria of cornea),UBERON:0009204 (medial nasal process mesenchyme),UBERON:0009501 (mesenchyme of fronto-nasal process) |
| part of: | UBERON:0009920 (optic neural crest),UBERON:0010258 (mesenchyme from rhombencephalic neural crest) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10813-111B3 (normal embryonic palatal mesenchymal cell line:HEPM)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0007213 (mesenchyme derived from head neural crest), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 5.42e-195 | FFCP PHASE1:Hg19::chr17:54893192..54893195,-#_7f1885a203ac023ca1c02d84054c5654 | p14@C17orf67 |
| 5.42e-195 | FFCP PHASE2:Hg19::chr17:54893192..54893195,-#_7f1885a203ac023ca1c02d84054c5654 | p14@C17orf67 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr17:54893269..54893278,-#_cef9998ad046e278d87fa22dd7bc1c31 | p11@C17orf67 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr17:54893213..54893220,-#_cef9998ad046e278d87fa22dd7bc1c31 | p12@C17orf67 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr8:57353655..57353662,-#_cef9998ad046e278d87fa22dd7bc1c31 | p@chr8:57353655..57353662, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr17:54893292..54893300,-#_cef9998ad046e278d87fa22dd7bc1c31 | p13@C17orf67 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr17:54893269..54893278,-#_cef9998ad046e278d87fa22dd7bc1c31 | p11@C17orf67 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr17:54893292..54893300,-#_cef9998ad046e278d87fa22dd7bc1c31 | p13@C17orf67 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr8:57353655..57353662,-#_cef9998ad046e278d87fa22dd7bc1c31 | p@chr8:57353655..57353662, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr17:54893213..54893220,-#_cef9998ad046e278d87fa22dd7bc1c31 | p12@C17orf67 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr5:75912402..75912418,-#_c91370692f2c86dbbfce11bf607eb7e7 | p@chr5:75912402..75912418, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr5:75912402..75912418,-#_c91370692f2c86dbbfce11bf607eb7e7 | p@chr5:75912402..75912418, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr4:151503647..151503656,+#_c91370692f2c86dbbfce11bf607eb7e7 | p14@MAB21L2 |
| 2.39e-66 | FFCP PHASE2:Hg19::chr4:151503647..151503656,+#_c91370692f2c86dbbfce11bf607eb7e7 | p14@MAB21L2 |
| 4.66e-66 | FFCP PHASE1:Hg19::chr4:151505582..151505614,+#_fec87e16f418d96a3c7e3b531a4f9257 | p@chr4:151505582..151505614, + |
| 4.66e-66 | FFCP PHASE2:Hg19::chr4:151505582..151505614,+#_fec87e16f418d96a3c7e3b531a4f9257 | p@chr4:151505582..151505614, + |
| 1.46e-50 | FFCP PHASE2:Hg19::chr17:54893196..54893207,-#_a48374c98ce126e40d2231070c68ebff | p9@C17orf67 |
| 1.46e-50 | FFCP PHASE2:Hg19::chr3:157823323..157823328,+#_a48374c98ce126e40d2231070c68ebff | p17@RSRC1 |
| 1.46e-50 | FFCP PHASE1:Hg19::chr3:157823323..157823328,+#_a48374c98ce126e40d2231070c68ebff | p17@RSRC1 |
| 1.46e-50 | FFCP PHASE1:Hg19::chr8:57354278..57354286,+#_a48374c98ce126e40d2231070c68ebff | p@chr8:57354278..57354286, + |
| 1.46e-50 | FFCP PHASE1:Hg19::chr17:54893196..54893207,-#_a48374c98ce126e40d2231070c68ebff | p9@C17orf67 |
| 1.46e-50 | FFCP PHASE2:Hg19::chr8:57354278..57354286,+#_a48374c98ce126e40d2231070c68ebff | p@chr8:57354278..57354286, + |
| 2.42e-50 | FFCP PHASE1:Hg19::chr8:57802672..57802682,-#_f8307549aae9e68846bb672a575d712b | p@chr8:57802672..57802682, - |
| 2.42e-50 | FFCP PHASE2:Hg19::chr8:57802672..57802682,-#_f8307549aae9e68846bb672a575d712b | p@chr8:57802672..57802682, - |
| 3.99e-50 | FFCP PHASE2:Hg19::chr17:76930661..76930674,+#_321a967aa48b3572490a0bb0d533c399 | p1@AK123925 |
| 3.99e-50 | FFCP PHASE2:Hg19::chr5:75913767..75913778,-#_321a967aa48b3572490a0bb0d533c399 | p@chr5:75913767..75913778, - |
| 3.99e-50 | FFCP PHASE2:Hg19::chr12:85673913..85673919,+#_321a967aa48b3572490a0bb0d533c399 | p7@ALX1 |
| 3.99e-50 | FFCP PHASE1:Hg19::chr12:85673913..85673919,+#_321a967aa48b3572490a0bb0d533c399 | p7@ALX1 |
| 3.99e-50 | FFCP PHASE1:Hg19::chr17:76930661..76930674,+#_321a967aa48b3572490a0bb0d533c399 | p1@AK123925 |
| 3.99e-50 | FFCP PHASE1:Hg19::chr5:75913767..75913778,-#_321a967aa48b3572490a0bb0d533c399 | p@chr5:75913767..75913778, - |
| 6.58e-50 | FFCP PHASE1:Hg19::chr2:33519090..33519092,+#_e4b3596ab7c007acd50958879d19d870 | p@chr2:33519090..33519092, + |
| 6.58e-50 | FFCP PHASE2:Hg19::chr13:28961248..28961262,-#_e4b3596ab7c007acd50958879d19d870 | p23@FLT1 |
| 6.58e-50 | FFCP PHASE1:Hg19::chr13:28961248..28961262,-#_e4b3596ab7c007acd50958879d19d870 | p23@FLT1 |
| 6.58e-50 | FFCP PHASE2:Hg19::chr2:33519090..33519092,+#_e4b3596ab7c007acd50958879d19d870 | p@chr2:33519090..33519092, + |
| 6.62e-41 | FFCP PHASE1:Hg19::chr8:57353666..57353675,-#_56d93f71b2390ef0cd1ccf5b74897c7d | p@chr8:57353666..57353675, - |
| 6.62e-41 | FFCP PHASE2:Hg19::chr8:57354143..57354152,+#_56d93f71b2390ef0cd1ccf5b74897c7d | p@chr8:57354143..57354152, + |
| 6.62e-41 | FFCP PHASE2:Hg19::chr8:57353779..57353790,-#_56d93f71b2390ef0cd1ccf5b74897c7d | p@chr8:57353779..57353790, - |
| 6.62e-41 | FFCP PHASE2:Hg19::chr8:57353666..57353675,-#_56d93f71b2390ef0cd1ccf5b74897c7d | p@chr8:57353666..57353675, - |
| 6.62e-41 | FFCP PHASE1:Hg19::chr8:57353779..57353790,-#_56d93f71b2390ef0cd1ccf5b74897c7d | p@chr8:57353779..57353790, - |
| 6.62e-41 | FFCP PHASE1:Hg19::chr8:57354143..57354152,+#_56d93f71b2390ef0cd1ccf5b74897c7d | p@chr8:57354143..57354152, + |
| 1.48e-40 | FFCP PHASE2:Hg19::chr20:49253452..49253461,-#_4c5efdbbb8b4655b0b56b62a4e203c99 | p12@FAM65C |
| 1.48e-40 | FFCP PHASE1:Hg19::chr1:75600308..75600316,+#_4c5efdbbb8b4655b0b56b62a4e203c99 | p8@LHX8 |
| 1.48e-40 | FFCP PHASE2:Hg19::chr1:6615391..6615401,+#_4c5efdbbb8b4655b0b56b62a4e203c99 | p2@TAS1R1 |
| 1.48e-40 | FFCP PHASE2:Hg19::chr1:75600308..75600316,+#_4c5efdbbb8b4655b0b56b62a4e203c99 | p8@LHX8 |
| 1.48e-40 | FFCP PHASE1:Hg19::chr20:49253452..49253461,-#_4c5efdbbb8b4655b0b56b62a4e203c99 | p12@FAM65C |
| 1.48e-40 | FFCP PHASE1:Hg19::chr1:6615391..6615401,+#_4c5efdbbb8b4655b0b56b62a4e203c99 | p2@TAS1R1 |
| 2.21e-40 | FFCP PHASE1:Hg19::chr5:75912831..75912842,-#_af693417442f36506c6f03e9b8fed506 | p@chr5:75912831..75912842, - |
| 2.21e-40 | FFCP PHASE1:Hg19::chr16:67687543..67687559,-#_af693417442f36506c6f03e9b8fed506 | p@chr16:67687543..67687559, - |
| 2.21e-40 | FFCP PHASE2:Hg19::chr5:75912831..75912842,-#_af693417442f36506c6f03e9b8fed506 | p@chr5:75912831..75912842, - |
| 2.21e-40 | FFCP PHASE2:Hg19::chr16:67687543..67687559,-#_af693417442f36506c6f03e9b8fed506 | p@chr16:67687543..67687559, - |
| 3.3e-40 | FFCP PHASE1:Hg19::chr9:125165007..125165016,+#_318ce16d1dcf9ce30b9025af35f7d8d8 | p@chr9:125165007..125165016, + |
| 3.3e-40 | FFCP PHASE1:Hg19::chr6:46190219..46190230,-#_318ce16d1dcf9ce30b9025af35f7d8d8 | p@chr6:46190219..46190230, - |
| 3.3e-40 | FFCP PHASE2:Hg19::chr9:125165007..125165016,+#_318ce16d1dcf9ce30b9025af35f7d8d8 | p@chr9:125165007..125165016, + |
| 3.3e-40 | FFCP PHASE2:Hg19::chr6:46190219..46190230,-#_318ce16d1dcf9ce30b9025af35f7d8d8 | p@chr6:46190219..46190230, - |
| 1.84e-34 | FFCP PHASE1:Hg19::chr4:8594472..8594473,+#_6d857da425cf3dc5f05572f0fd957fda | p4@CPZ |
| 1.84e-34 | FFCP PHASE2:Hg19::chr4:8594472..8594473,+#_6d857da425cf3dc5f05572f0fd957fda | p4@CPZ |
| 1.84e-34 | FFCP PHASE1:Hg19::chr8:57359557..57359570,-#_6d857da425cf3dc5f05572f0fd957fda | p5@PENK |
| 1.84e-34 | FFCP PHASE1:Hg19::chr10:15760985..15760992,-#_6d857da425cf3dc5f05572f0fd957fda | p@chr10:15760985..15760992, - |
| 1.84e-34 | FFCP PHASE2:Hg19::chr10:15760985..15760992,-#_6d857da425cf3dc5f05572f0fd957fda | p@chr10:15760985..15760992, - |
| 1.84e-34 | FFCP PHASE2:Hg19::chr8:57359557..57359570,-#_6d857da425cf3dc5f05572f0fd957fda | p5@PENK |
| 2.58e-34 | FFCP PHASE2:Hg19::chr14:61125018..61125037,-#_8709108a597746c86e71907e017ba827 | p9@SIX1 |
| 2.58e-34 | FFCP PHASE1:Hg19::chr14:61125018..61125037,-#_8709108a597746c86e71907e017ba827 | p9@SIX1 |
| 5.05e-34 | FFCP PHASE2:Hg19::chr6:134327986..134327991,-#_9f5f35d97898c793805142ba917538f2 | p@chr6:134327986..134327991, - |
| 5.05e-34 | FFCP PHASE1:Hg19::chr6:134327986..134327991,-#_9f5f35d97898c793805142ba917538f2 | p@chr6:134327986..134327991, - |
| 7.06e-34 | FFCP PHASE1:Hg19::chr8:57353676..57353688,-#_d8aafbb887fc15582e1b605c409146dd | p@chr8:57353676..57353688, - |
| 7.06e-34 | FFCP PHASE2:Hg19::chr13:58291223..58291226,+#_d8aafbb887fc15582e1b605c409146dd | p@chr13:58291223..58291226, + |
| 7.06e-34 | FFCP PHASE1:Hg19::chr13:58291223..58291226,+#_d8aafbb887fc15582e1b605c409146dd | p@chr13:58291223..58291226, + |
| 7.06e-34 | FFCP PHASE2:Hg19::chr8:57353676..57353688,-#_d8aafbb887fc15582e1b605c409146dd | p@chr8:57353676..57353688, - |
| 9.85e-34 | FFCP PHASE1:Hg19::chr5:127873659..127873667,-#_9ffd4c9712bac81df291c5721e55f2d0 | p12@FBN2 |
| 9.85e-34 | FFCP PHASE1:Hg19::chr5:19721484..19721507,-#_9ffd4c9712bac81df291c5721e55f2d0 | p@chr5:19721484..19721507, - |
| 9.85e-34 | FFCP PHASE1:Hg19::chrX:133792540..133792551,-#_9ffd4c9712bac81df291c5721e55f2d0 | p4@PLAC1 |
| 9.85e-34 | FFCP PHASE2:Hg19::chr5:127873659..127873667,-#_9ffd4c9712bac81df291c5721e55f2d0 | p12@FBN2 |
| 9.85e-34 | FFCP PHASE2:Hg19::chr5:19721484..19721507,-#_9ffd4c9712bac81df291c5721e55f2d0 | p@chr5:19721484..19721507, - |
| 9.85e-34 | FFCP PHASE2:Hg19::chrX:133792540..133792551,-#_9ffd4c9712bac81df291c5721e55f2d0 | p4@PLAC1 |
| 7.48e-30 | FFCP PHASE1:Hg19::chr8:57353804..57353821,-#_b0f12a1298b3c3c0ee2b29289ff3326a | p@chr8:57353804..57353821, - |
| 7.48e-30 | FFCP PHASE1:Hg19::chr8:57354360..57354367,+#_b0f12a1298b3c3c0ee2b29289ff3326a | p@chr8:57354360..57354367, + |
| 7.48e-30 | FFCP PHASE2:Hg19::chr8:57353804..57353821,-#_b0f12a1298b3c3c0ee2b29289ff3326a | p@chr8:57353804..57353821, - |
| 7.48e-30 | FFCP PHASE1:Hg19::chr8:57353982..57353991,-#_b0f12a1298b3c3c0ee2b29289ff3326a | p@chr8:57353982..57353991, - |
| 7.48e-30 | FFCP PHASE2:Hg19::chr8:57354360..57354367,+#_b0f12a1298b3c3c0ee2b29289ff3326a | p@chr8:57354360..57354367, + |
| 7.48e-30 | FFCP PHASE2:Hg19::chr8:57353982..57353991,-#_b0f12a1298b3c3c0ee2b29289ff3326a | p@chr8:57353982..57353991, - |
| 9.99e-30 | FFCP PHASE1:Hg19::chr10:15762107..15762114,-#_5b6772f2e1bc972be802d22e2f791be2 | p10@ITGA8 |
| 9.99e-30 | FFCP PHASE2:Hg19::chr10:15762107..15762114,-#_5b6772f2e1bc972be802d22e2f791be2 | p10@ITGA8 |
| 9.99e-30 | FFCP PHASE1:Hg19::chr3:157824322..157824334,-#_5b6772f2e1bc972be802d22e2f791be2 | p7@SHOX2 |
| 9.99e-30 | FFCP PHASE2:Hg19::chr3:157824322..157824334,-#_5b6772f2e1bc972be802d22e2f791be2 | p7@SHOX2 |
| 1.33e-29 | FFCP PHASE2:Hg19::chr22:28193943..28193956,-#_cc29cba33d71c39e87a99080b9a8eccf | p@chr22:28193943..28193956, - |
| 1.33e-29 | FFCP PHASE1:Hg19::chrX:132670143..132670152,-#_cc29cba33d71c39e87a99080b9a8eccf | p@chrX:132670143..132670152, - |
| 1.33e-29 | FFCP PHASE1:Hg19::chr17:79071218..79071221,-#_cc29cba33d71c39e87a99080b9a8eccf | p@chr17:79071218..79071221, - |
| 1.33e-29 | FFCP PHASE1:Hg19::chr22:28193943..28193956,-#_cc29cba33d71c39e87a99080b9a8eccf | p@chr22:28193943..28193956, - |
| 1.33e-29 | FFCP PHASE2:Hg19::chrX:132670143..132670152,-#_cc29cba33d71c39e87a99080b9a8eccf | p@chrX:132670143..132670152, - |
| 1.33e-29 | FFCP PHASE2:Hg19::chr17:79071218..79071221,-#_cc29cba33d71c39e87a99080b9a8eccf | p@chr17:79071218..79071221, - |
| 1.78e-29 | FFCP PHASE2:Hg19::chr1:21904551..21904569,-#_22456672f6200d3f57ad0503573d685a | p@chr1:21904551..21904569, - |
| 1.78e-29 | FFCP PHASE1:Hg19::chr1:21904551..21904569,-#_22456672f6200d3f57ad0503573d685a | p@chr1:21904551..21904569, - |
| 3.16e-29 | FFCP PHASE2:Hg19::chr14:89044406..89044416,+#_9e5ff387fdd6dc8d1ef9751c64b2a9a7 | p@chr14:89044406..89044416, + |
| 3.16e-29 | FFCP PHASE1:Hg19::chr14:89044406..89044416,+#_9e5ff387fdd6dc8d1ef9751c64b2a9a7 | p@chr14:89044406..89044416, + |
| 3.16e-29 | FFCP PHASE2:Hg19::chr8:57359975..57359992,-#_9e5ff387fdd6dc8d1ef9751c64b2a9a7 | p@chr8:57359975..57359992, - |
| 3.16e-29 | FFCP PHASE1:Hg19::chr1:156470861..156470868,-#_9e5ff387fdd6dc8d1ef9751c64b2a9a7 | p18@MEF2D |
| 3.16e-29 | FFCP PHASE1:Hg19::chr8:57359975..57359992,-#_9e5ff387fdd6dc8d1ef9751c64b2a9a7 | p@chr8:57359975..57359992, - |
| 3.16e-29 | FFCP PHASE2:Hg19::chr1:156470861..156470868,-#_9e5ff387fdd6dc8d1ef9751c64b2a9a7 | p18@MEF2D |
| 4.2e-29 | FFCP PHASE1:Hg19::chr1:6615468..6615485,+#_9a13021ef09c6e35e4b95211fda2ca60 | p1@TAS1R1 |
| 4.2e-29 | FFCP PHASE2:Hg19::chr4:151503350..151503358,+#_9a13021ef09c6e35e4b95211fda2ca60 | p11@MAB21L2 |
