Personal tools

UBERON:0009201: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 5: Line 5:
|def="A nephric duct is a tube that drains a primitive kidney[GO]." [GO:0072176]
|def="A nephric duct is a tube that drains a primitive kidney[GO]." [GO:0072176]
|xref=
|xref=
|is_a=UBERON:0000058;;UBERON:0003914;;UBERON:0004819;;UBERON:0006553;;UBERON:0006555
|is_a=UBERON:0003914;;UBERON:0004819;;UBERON:0006553;;UBERON:0006555
|synonym=
|synonym=
|comment=pronephric duct or mesonephric duct
|comment=pronephric duct or mesonephric duct
Line 14: Line 14:
|obo_creation_date=
|obo_creation_date=
|subset=
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|has_quality=
|has_quality=
|located_in=
|located_in=
|part_of=UBERON:0002113
|part_of=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|is_obsolete=
|preceded_by=
|preceded_by=
}}
}}

Revision as of 17:08, 26 June 2012

Name:nephric duct
Definition:"A nephric duct is a tube that drains a primitive kidney[GO]." [GO:0072176]
Comments:pronephric duct or mesonephric duct

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0003914(epithelial tube),UBERON:0004819(kidney epithelium),UBERON:0006553(renal duct),UBERON:0006555(excretory tube)



Children

is a:UBERON:0003060 (pronephric duct),UBERON:0003074 (mesonephric duct)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0009201 (nephric duct), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.58e-86FFCP PHASE2:Mm9::chr18:44264202..44264213,+#_e2abe83880ba1d2bc690a5cf9591ad22p4@Spink12
1.58e-86FFCP PHASE1:Mm9::chr18:44264202..44264213,+#_e2abe83880ba1d2bc690a5cf9591ad22p4@Spink12
3.28e-58FFCP PHASE2:Mm9::chrX:20419453..20419476,+#_006addc8dc83332a4f4d9db9adb060d7p@chrX:20419453..20419476, +
3.28e-58FFCP PHASE2:Mm9::chr8:126591032..126591039,+#_006addc8dc83332a4f4d9db9adb060d7p@chr8:126591032..126591039, +
3.28e-58FFCP PHASE1:Mm9::chr1:192816674..192816714,+#_006addc8dc83332a4f4d9db9adb060d7p@chr1:192816674..192816714, +
3.28e-58FFCP PHASE2:Mm9::chr3:65253465..65253475,+#_006addc8dc83332a4f4d9db9adb060d7p@chr3:65253465..65253475, +
3.28e-58FFCP PHASE2:Mm9::chr18:62816857..62816866,+#_006addc8dc83332a4f4d9db9adb060d7p7@Spink10
3.28e-58FFCP PHASE1:Mm9::chr13:21383212..21383225,-#_006addc8dc83332a4f4d9db9adb060d7p@chr13:21383212..21383225, -
3.28e-58FFCP PHASE1:Mm9::chr1:90156002..90156013,+#_006addc8dc83332a4f4d9db9adb060d7p@chr1:90156002..90156013, +
3.28e-58FFCP PHASE1:Mm9::chr16:23308115..23308126,+#_006addc8dc83332a4f4d9db9adb060d7p@chr16:23308115..23308126, +
3.28e-58FFCP PHASE2:Mm9::chr1:155698166..155698174,-#_006addc8dc83332a4f4d9db9adb060d7p@chr1:155698166..155698174, -
3.28e-58FFCP PHASE1:Mm9::chr1:155698178..155698191,-#_006addc8dc83332a4f4d9db9adb060d7p@chr1:155698178..155698191, -
3.28e-58FFCP PHASE1:Mm9::chr18:44261480..44261486,+#_006addc8dc83332a4f4d9db9adb060d7p@chr18:44261480..44261486, +
3.28e-58FFCP PHASE1:Mm9::chr9:35657557..35657582,-#_006addc8dc83332a4f4d9db9adb060d7p2@Gm3428
3.28e-58FFCP PHASE2:Mm9::chr11:63779573..63779582,+#_006addc8dc83332a4f4d9db9adb060d7p@chr11:63779573..63779582, +
3.28e-58FFCP PHASE1:Mm9::chr2:164464249..164464258,-#_006addc8dc83332a4f4d9db9adb060d7p@chr2:164464249..164464258, -
3.28e-58FFCP PHASE2:Mm9::chr13:21379261..21379264,-#_006addc8dc83332a4f4d9db9adb060d7p@chr13:21379261..21379264, -
3.28e-58FFCP PHASE2:Mm9::chr9:35651650..35651673,-#_006addc8dc83332a4f4d9db9adb060d7p4@9230110F15Rik
3.28e-58FFCP PHASE2:Mm9::chr1:11079838..11079844,+#_006addc8dc83332a4f4d9db9adb060d7p@chr1:11079838..11079844, +
3.28e-58FFCP PHASE1:Mm9::chr15:54678915..54678922,-#_006addc8dc83332a4f4d9db9adb060d7p@chr15:54678915..54678922, -
3.28e-58FFCP PHASE2:Mm9::chr2:152388977..152388983,+#_006addc8dc83332a4f4d9db9adb060d7p@chr2:152388977..152388983, +
3.28e-58FFCP PHASE2:Mm9::chrX:130496286..130496293,-#_006addc8dc83332a4f4d9db9adb060d7p@chrX:130496286..130496293, -
3.28e-58FFCP PHASE1:Mm9::chr2:167480413..167480463,-#_006addc8dc83332a4f4d9db9adb060d7p@chr2:167480413..167480463, -
3.28e-58FFCP PHASE2:Mm9::chr17:73221062..73221084,+#_006addc8dc83332a4f4d9db9adb060d7p@chr17:73221062..73221084, +
3.28e-58FFCP PHASE2:Mm9::chr7:31507623..31507631,+#_006addc8dc83332a4f4d9db9adb060d7p4@Atp4a
3.28e-58FFCP PHASE1:Mm9::chr11:101958887..101958896,-#_006addc8dc83332a4f4d9db9adb060d7p@chr11:101958887..101958896, -
3.28e-58FFCP PHASE2:Mm9::chr18:44319583..44319592,-#_006addc8dc83332a4f4d9db9adb060d7p@chr18:44319583..44319592, -
3.28e-58FFCP PHASE1:Mm9::chr1:89597818..89597827,+#_006addc8dc83332a4f4d9db9adb060d7p@chr1:89597818..89597827, +
3.28e-58FFCP PHASE1:Mm9::chr8:22061721..22061728,-#_006addc8dc83332a4f4d9db9adb060d7p2@Gm6040, p2@LOC100503992
3.28e-58FFCP PHASE2:Mm9::chr4:33600466..33600491,-#_006addc8dc83332a4f4d9db9adb060d7p@chr4:33600466..33600491, -
3.28e-58FFCP PHASE2:Mm9::chr13:21379065..21379072,-#_006addc8dc83332a4f4d9db9adb060d7p@chr13:21379065..21379072, -
3.28e-58FFCP PHASE2:Mm9::chr12:104945515..104945524,-#_006addc8dc83332a4f4d9db9adb060d7p@chr12:104945515..104945524, -
3.28e-58FFCP PHASE2:Mm9::chr10:61976287..61976297,-#_006addc8dc83332a4f4d9db9adb060d7p@chr10:61976287..61976297, -
3.28e-58FFCP PHASE2:Mm9::chr1:87936213..87936218,+#_006addc8dc83332a4f4d9db9adb060d7p@chr1:87936213..87936218, +
3.28e-58FFCP PHASE1:Mm9::chrX:50280152..50280179,+#_006addc8dc83332a4f4d9db9adb060d7p@chrX:50280152..50280179, +
3.28e-58FFCP PHASE1:Mm9::chr5:31379878..31379883,+#_006addc8dc83332a4f4d9db9adb060d7p@chr5:31379878..31379883, +
3.28e-58FFCP PHASE2:Mm9::chr13:21385325..21385329,-#_006addc8dc83332a4f4d9db9adb060d7p@chr13:21385325..21385329, -
3.28e-58FFCP PHASE1:Mm9::chr11:96140694..96140720,+#_006addc8dc83332a4f4d9db9adb060d7p@chr11:96140694..96140720, +
3.28e-58FFCP PHASE1:Mm9::chr9:70761885..70761895,+#_006addc8dc83332a4f4d9db9adb060d7p@chr9:70761885..70761895, +
3.28e-58FFCP PHASE1:Mm9::chr5:75559819..75559830,+#_006addc8dc83332a4f4d9db9adb060d7p@chr5:75559819..75559830, +
3.28e-58FFCP PHASE1:Mm9::chr1:87922778..87922788,+#_006addc8dc83332a4f4d9db9adb060d7p@chr1:87922778..87922788, +
3.28e-58FFCP PHASE1:Mm9::chr10:116399500..116399516,+#_006addc8dc83332a4f4d9db9adb060d7p@chr10:116399500..116399516, +
3.28e-58FFCP PHASE1:Mm9::chr8:19141447..19141469,+#_006addc8dc83332a4f4d9db9adb060d7p@chr8:19141447..19141469, +
3.28e-58FFCP PHASE2:Mm9::chr1:89597725..89597743,+#_006addc8dc83332a4f4d9db9adb060d7p@chr1:89597725..89597743, +
3.28e-58FFCP PHASE2:Mm9::chr5:110773580..110773589,+#_006addc8dc83332a4f4d9db9adb060d7p@chr5:110773580..110773589, +
3.28e-58FFCP PHASE2:Mm9::chr11:116901482..116901494,-#_006addc8dc83332a4f4d9db9adb060d7p2@ENSMUST00000152401
3.28e-58FFCP PHASE2:Mm9::chr12:16664708..16664723,+#_006addc8dc83332a4f4d9db9adb060d7p@chr12:16664708..16664723, +
3.28e-58FFCP PHASE2:Mm9::chr2:160573108..160573123,+#_006addc8dc83332a4f4d9db9adb060d7p@chr2:160573108..160573123, +
3.28e-58FFCP PHASE1:Mm9::chr12:110131571..110131579,-#_006addc8dc83332a4f4d9db9adb060d7p15@Wars
3.28e-58FFCP PHASE2:Mm9::chr16:25752228..25752237,+#_006addc8dc83332a4f4d9db9adb060d7p@chr16:25752228..25752237, +
3.28e-58FFCP PHASE1:Mm9::chr16:43230846..43230884,+#_006addc8dc83332a4f4d9db9adb060d7p@chr16:43230846..43230884, +
3.28e-58FFCP PHASE1:Mm9::chr11:34107586..34107593,-#_006addc8dc83332a4f4d9db9adb060d7p@chr11:34107586..34107593, -
3.28e-58FFCP PHASE1:Mm9::chr10:56515486..56515496,+#_006addc8dc83332a4f4d9db9adb060d7p@chr10:56515486..56515496, +
3.28e-58FFCP PHASE2:Mm9::chr4:134893699..134893708,+#_006addc8dc83332a4f4d9db9adb060d7p@chr4:134893699..134893708, +
3.28e-58FFCP PHASE1:Mm9::chr13:21378774..21378782,-#_006addc8dc83332a4f4d9db9adb060d7p@chr13:21378774..21378782, -
3.28e-58FFCP PHASE2:Mm9::chr2:25349488..25349492,-#_006addc8dc83332a4f4d9db9adb060d7p6@Lcn12
3.28e-58FFCP PHASE1:Mm9::chr13:21379322..21379338,-#_006addc8dc83332a4f4d9db9adb060d7p@chr13:21379322..21379338, -
3.28e-58FFCP PHASE2:Mm9::chr7:109379339..109379349,+#_006addc8dc83332a4f4d9db9adb060d7p15@Pgap2
3.28e-58FFCP PHASE1:Mm9::chr8:19062951..19062955,+#_006addc8dc83332a4f4d9db9adb060d7p@chr8:19062951..19062955, +
3.28e-58FFCP PHASE2:Mm9::chrX:160347529..160347538,+#_006addc8dc83332a4f4d9db9adb060d7p@chrX:160347529..160347538, +
3.28e-58FFCP PHASE2:Mm9::chr2:148676919..148676930,-#_006addc8dc83332a4f4d9db9adb060d7p3@9230104L09Rik
3.28e-58FFCP PHASE2:Mm9::chr11:34107586..34107593,-#_006addc8dc83332a4f4d9db9adb060d7p@chr11:34107586..34107593, -
3.28e-58FFCP PHASE1:Mm9::chr5:110773580..110773589,+#_006addc8dc83332a4f4d9db9adb060d7p@chr5:110773580..110773589, +
3.28e-58FFCP PHASE2:Mm9::chr13:21378296..21378303,+#_006addc8dc83332a4f4d9db9adb060d7p@chr13:21378296..21378303, +
3.28e-58FFCP PHASE1:Mm9::chr11:116901540..116901549,-#_006addc8dc83332a4f4d9db9adb060d7p4@uc007mmw.1
3.28e-58FFCP PHASE1:Mm9::chr1:155738967..155738974,+#_006addc8dc83332a4f4d9db9adb060d7p@chr1:155738967..155738974, +
3.28e-58FFCP PHASE2:Mm9::chr15:72756032..72756041,-#_006addc8dc83332a4f4d9db9adb060d7p@chr15:72756032..72756041, -
3.28e-58FFCP PHASE1:Mm9::chr2:164479326..164479336,+#_006addc8dc83332a4f4d9db9adb060d7p@chr2:164479326..164479336, +
3.28e-58FFCP PHASE2:Mm9::chr13:21379372..21379404,+#_006addc8dc83332a4f4d9db9adb060d7p@chr13:21379372..21379404, +
3.28e-58FFCP PHASE1:Mm9::chr2:148625223..148625234,+#_006addc8dc83332a4f4d9db9adb060d7p@chr2:148625223..148625234, +
3.28e-58FFCP PHASE1:Mm9::chr17:14306714..14306740,+#_006addc8dc83332a4f4d9db9adb060d7p@chr17:14306714..14306740, +
3.28e-58FFCP PHASE2:Mm9::chr9:35657485..35657490,-#_006addc8dc83332a4f4d9db9adb060d7p3@Gm3428
3.28e-58FFCP PHASE1:Mm9::chr15:72756032..72756041,-#_006addc8dc83332a4f4d9db9adb060d7p@chr15:72756032..72756041, -
3.28e-58FFCP PHASE1:Mm9::chr4:138824620..138824627,+#_006addc8dc83332a4f4d9db9adb060d7p@chr4:138824620..138824627, +
3.28e-58FFCP PHASE2:Mm9::chr9:26704579..26704582,-#_006addc8dc83332a4f4d9db9adb060d7p@chr9:26704579..26704582, -
3.28e-58FFCP PHASE1:Mm9::chr13:21379125..21379144,-#_006addc8dc83332a4f4d9db9adb060d7p@chr13:21379125..21379144, -
3.28e-58FFCP PHASE1:Mm9::chrX:75798114..75798125,-#_006addc8dc83332a4f4d9db9adb060d7p@chrX:75798114..75798125, -
3.28e-58FFCP PHASE1:Mm9::chr19:24582739..24582748,-#_006addc8dc83332a4f4d9db9adb060d7p@chr19:24582739..24582748, -
3.28e-58FFCP PHASE2:Mm9::chr9:42151966..42151976,-#_006addc8dc83332a4f4d9db9adb060d7p9@Tecta
3.28e-58FFCP PHASE2:Mm9::chr14:67453354..67453365,-#_006addc8dc83332a4f4d9db9adb060d7p@chr14:67453354..67453365, -
3.28e-58FFCP PHASE2:Mm9::chr14:63611303..63611312,+#_006addc8dc83332a4f4d9db9adb060d7p@chr14:63611303..63611312, +
3.28e-58FFCP PHASE1:Mm9::chr9:26688157..26688159,-#_006addc8dc83332a4f4d9db9adb060d7p@chr9:26688157..26688159, -
3.28e-58FFCP PHASE2:Mm9::chr8:19141471..19141518,-#_006addc8dc83332a4f4d9db9adb060d7p@chr8:19141471..19141518, -
3.28e-58FFCP PHASE1:Mm9::chr5:100634942..100634968,+#_006addc8dc83332a4f4d9db9adb060d7p@chr5:100634942..100634968, +
3.28e-58FFCP PHASE1:Mm9::chr4:106731469..106731481,-#_006addc8dc83332a4f4d9db9adb060d7p@chr4:106731469..106731481, -
3.28e-58FFCP PHASE2:Mm9::chr13:46041606..46041640,-#_006addc8dc83332a4f4d9db9adb060d7p@chr13:46041606..46041640, -
3.28e-58FFCP PHASE1:Mm9::chr12:16664775..16664784,+#_006addc8dc83332a4f4d9db9adb060d7p@chr12:16664775..16664784, +
3.28e-58FFCP PHASE1:Mm9::chrX:156829476..156829504,+#_006addc8dc83332a4f4d9db9adb060d7p@chrX:156829476..156829504, +
3.28e-58FFCP PHASE1:Mm9::chr9:35651788..35651804,-#_006addc8dc83332a4f4d9db9adb060d7p1@9230110F15Rik
3.28e-58FFCP PHASE2:Mm9::chr13:21379159..21379162,-#_006addc8dc83332a4f4d9db9adb060d7p@chr13:21379159..21379162, -
3.28e-58FFCP PHASE2:Mm9::chr5:77645280..77645295,-#_006addc8dc83332a4f4d9db9adb060d7p@chr5:77645280..77645295, -
3.28e-58FFCP PHASE1:Mm9::chr11:59845404..59845416,-#_006addc8dc83332a4f4d9db9adb060d7p@chr11:59845404..59845416, -
3.28e-58FFCP PHASE2:Mm9::chr15:54678983..54678995,-#_006addc8dc83332a4f4d9db9adb060d7p@chr15:54678983..54678995, -
3.28e-58FFCP PHASE1:Mm9::chr2:152290340..152290344,-#_006addc8dc83332a4f4d9db9adb060d7p2@Defb23
3.28e-58FFCP PHASE2:Mm9::chr4:138824620..138824627,+#_006addc8dc83332a4f4d9db9adb060d7p@chr4:138824620..138824627, +
3.28e-58FFCP PHASE2:Mm9::chr14:63611201..63611210,+#_006addc8dc83332a4f4d9db9adb060d7p@chr14:63611201..63611210, +
3.28e-58FFCP PHASE2:Mm9::chr5:31379550..31379559,+#_006addc8dc83332a4f4d9db9adb060d7p@chr5:31379550..31379559, +
3.28e-58FFCP PHASE1:Mm9::chr9:70779586..70779596,+#_006addc8dc83332a4f4d9db9adb060d7p@chr9:70779586..70779596, +
3.28e-58FFCP PHASE1:Mm9::chr9:26610184..26610191,-#_006addc8dc83332a4f4d9db9adb060d7p4@Glb1l2
3.28e-58FFCP PHASE1:Mm9::chr14:63630486..63630493,+#_006addc8dc83332a4f4d9db9adb060d7p5@Defb43

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0009201&oldid=1836335"