Personal tools

CL:0002592: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 5: Line 5:
|def="A smooth muscle cell of the coronary artery." [GOC:tfm]
|def="A smooth muscle cell of the coronary artery." [GOC:tfm]
|xref=
|xref=
|is_a=CL:0000359
|is_a=CL:0000359;;CL:0002494
|synonym=
|synonym=
|comment=
|comment=
Line 14: Line 14:
|obo_creation_date=2011-03-06T05:01:34Z
|obo_creation_date=2011-03-06T05:01:34Z
|subset=
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|has_quality=
|has_quality=
|located_in=
|located_in=
|part_of=UBERON:0001621
|part_of=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.obo.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|is_obsolete=
|is_obsolete=
|preceded_by=
|preceded_by=
}}
}}

Revision as of 17:28, 26 June 2012

Name:smooth muscle cell of the coronary artery
Namespace:cell
Definition:"A smooth muscle cell of the coronary artery." [GOC:tfm]
Created by:tmeehan
Creation date:2011-03-06T05:01:34Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000359(vascular associated smooth muscle cell),CL:0002494(cardiocyte)



Children


derives from:FF:0000172 (human smooth muscle cell of coronary artery sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

  • 11286-116I8 (Smooth Muscle Cells - Coronary Artery, donor1)
  • 11363-117I4 (Smooth Muscle Cells - Coronary Artery, donor2)
  • 11435-118H4 (Smooth Muscle Cells - Coronary Artery, donor3)

Mouse (Mus musculus)

  • 11286-116I8 (Smooth Muscle Cells - Coronary Artery, donor1)
  • 11363-117I4 (Smooth Muscle Cells - Coronary Artery, donor2)
  • 11435-118H4 (Smooth Muscle Cells - Coronary Artery, donor3)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002592 (smooth muscle cell of the coronary artery), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
2.39e-66FFCP PHASE2:Hg19::chr2:228743006..228743014,+#_ea35a9ee4da9977adafe94bfdb055c82p@chr2:228743006..228743014, +
2.39e-66FFCP PHASE2:Hg19::chr8:96701429..96701463,-#_ea35a9ee4da9977adafe94bfdb055c82p@chr8:96701429..96701463, -
2.39e-66FFCP PHASE1:Hg19::chr2:228743006..228743014,+#_ea35a9ee4da9977adafe94bfdb055c82p@chr2:228743006..228743014, +
2.39e-66FFCP PHASE1:Hg19::chr8:96701429..96701463,-#_ea35a9ee4da9977adafe94bfdb055c82p@chr8:96701429..96701463, -
3.85e-34FFCP PHASE1:Hg19::chr1:94752932..94752936,+#_00d4662a4b9e8abeb0480505bad0faedp@chr1:94752932..94752936, +
3.85e-34FFCP PHASE2:Hg19::chr1:94752932..94752936,+#_00d4662a4b9e8abeb0480505bad0faedp@chr1:94752932..94752936, +
4.27e-34FFCP PHASE1:Hg19::chr21:35014977..35014986,+#_6e3fa8c222489c02fc95460f3a68aa41p16@ITSN1
4.27e-34FFCP PHASE1:Hg19::chr9:119160366..119160371,+#_6e3fa8c222489c02fc95460f3a68aa41p91@PAPPA
4.27e-34FFCP PHASE2:Hg19::chr21:35014977..35014986,+#_6e3fa8c222489c02fc95460f3a68aa41p16@ITSN1
4.27e-34FFCP PHASE2:Hg19::chr9:119160366..119160371,+#_6e3fa8c222489c02fc95460f3a68aa41p91@PAPPA
5.96e-34FFCP PHASE1:Hg19::chr1:168165589..168165617,+#_b78d12aef716def70c3c2b7fa27773bbp@chr1:168165589..168165617, +
5.96e-34FFCP PHASE1:Hg19::chr2:216638374..216638390,-#_b78d12aef716def70c3c2b7fa27773bbp@chr2:216638374..216638390, -
5.96e-34FFCP PHASE1:Hg19::chr20:25521435..25521445,-#_b78d12aef716def70c3c2b7fa27773bbp8@NINL
5.96e-34FFCP PHASE1:Hg19::chr4:104020020..104020035,-#_b78d12aef716def70c3c2b7fa27773bbp@chr4:104020020..104020035, -
5.96e-34FFCP PHASE1:Hg19::chr2:220325633..220325639,+#_b78d12aef716def70c3c2b7fa27773bbp34@SPEG
5.96e-34FFCP PHASE2:Hg19::chr1:78475671..78475674,+#_b78d12aef716def70c3c2b7fa27773bbp@chr1:78475671..78475674, +
5.96e-34FFCP PHASE2:Hg19::chr3:114343262..114343275,+#_b78d12aef716def70c3c2b7fa27773bbp@chr3:114343262..114343275, +
5.96e-34FFCP PHASE2:Hg19::chr1:168165589..168165617,+#_b78d12aef716def70c3c2b7fa27773bbp@chr1:168165589..168165617, +
5.96e-34FFCP PHASE1:Hg19::chr6:38754506..38754523,+#_b78d12aef716def70c3c2b7fa27773bbp@chr6:38754506..38754523, +
5.96e-34FFCP PHASE1:Hg19::chr11:86649555..86649566,-#_b78d12aef716def70c3c2b7fa27773bbp@chr11:86649555..86649566, -
5.96e-34FFCP PHASE1:Hg19::chr9:118413157..118413164,-#_b78d12aef716def70c3c2b7fa27773bbp@chr9:118413157..118413164, -
5.96e-34FFCP PHASE1:Hg19::chr6:16905879..16905882,+#_b78d12aef716def70c3c2b7fa27773bbp@chr6:16905879..16905882, +
5.96e-34FFCP PHASE1:Hg19::chr4:69048358..69048369,-#_b78d12aef716def70c3c2b7fa27773bbp@chr4:69048358..69048369, -
5.96e-34FFCP PHASE2:Hg19::chr4:104020020..104020035,-#_b78d12aef716def70c3c2b7fa27773bbp@chr4:104020020..104020035, -
5.96e-34FFCP PHASE2:Hg19::chr2:216638374..216638390,-#_b78d12aef716def70c3c2b7fa27773bbp@chr2:216638374..216638390, -
5.96e-34FFCP PHASE2:Hg19::chr20:25521435..25521445,-#_b78d12aef716def70c3c2b7fa27773bbp8@NINL
5.96e-34FFCP PHASE1:Hg19::chr8:107871438..107871439,-#_b78d12aef716def70c3c2b7fa27773bbp@chr8:107871438..107871439, -
5.96e-34FFCP PHASE2:Hg19::chr2:220325633..220325639,+#_b78d12aef716def70c3c2b7fa27773bbp34@SPEG
5.96e-34FFCP PHASE2:Hg19::chr6:38754506..38754523,+#_b78d12aef716def70c3c2b7fa27773bbp@chr6:38754506..38754523, +
5.96e-34FFCP PHASE2:Hg19::chr11:86649555..86649566,-#_b78d12aef716def70c3c2b7fa27773bbp@chr11:86649555..86649566, -
5.96e-34FFCP PHASE1:Hg19::chr1:78475671..78475674,+#_b78d12aef716def70c3c2b7fa27773bbp@chr1:78475671..78475674, +
5.96e-34FFCP PHASE2:Hg19::chr9:118413157..118413164,-#_b78d12aef716def70c3c2b7fa27773bbp@chr9:118413157..118413164, -
5.96e-34FFCP PHASE2:Hg19::chr8:107871438..107871439,-#_b78d12aef716def70c3c2b7fa27773bbp@chr8:107871438..107871439, -
5.96e-34FFCP PHASE2:Hg19::chr6:16905879..16905882,+#_b78d12aef716def70c3c2b7fa27773bbp@chr6:16905879..16905882, +
5.96e-34FFCP PHASE2:Hg19::chr4:69048358..69048369,-#_b78d12aef716def70c3c2b7fa27773bbp@chr4:69048358..69048369, -
5.96e-34FFCP PHASE1:Hg19::chr3:114343262..114343275,+#_b78d12aef716def70c3c2b7fa27773bbp@chr3:114343262..114343275, +
1.08e-33FFCP PHASE1:Hg19::chr11:102665915..102665927,+#_8926e935c4248e5dcdcddfe260611520p@chr11:102665915..102665927, +
1.08e-33FFCP PHASE2:Hg19::chr11:102665915..102665927,+#_8926e935c4248e5dcdcddfe260611520p@chr11:102665915..102665927, +
1.5e-33FFCP PHASE1:Hg19::chr11:116728814..116728821,-#_9fcd1d1438de6097ee65415e0abd871ep@chr11:116728814..116728821, -
1.5e-33FFCP PHASE2:Hg19::chr11:116728814..116728821,-#_9fcd1d1438de6097ee65415e0abd871ep@chr11:116728814..116728821, -
4.17e-30FFCP PHASE2:Hg19::chr7:5569572..5569582,-#_9b562f817e06f37bbc5251380b63eb15p40@ACTB
4.17e-30FFCP PHASE1:Hg19::chr7:5569572..5569582,-#_9b562f817e06f37bbc5251380b63eb15p40@ACTB
4.71e-29FFCP PHASE2:Hg19::chr2:134548872..134548879,-#_e9dacc909d68dbc5c4a6d9126d086f19p@chr2:134548872..134548879, -
4.71e-29FFCP PHASE1:Hg19::chr2:134548872..134548879,-#_e9dacc909d68dbc5c4a6d9126d086f19p@chr2:134548872..134548879, -
9.56e-27FFCP PHASE1:Hg19::chr11:102661008..102661029,-#_e0b07a670963ef7781ba37f517eb0b48p@chr11:102661008..102661029, -
9.56e-27FFCP PHASE2:Hg19::chr11:102661008..102661029,-#_e0b07a670963ef7781ba37f517eb0b48p@chr11:102661008..102661029, -
1.22e-26FFCP PHASE2:Hg19::chr11:102662218..102662229,-#_9ec9c8c67db34fb05f9e1864e91d7f08p@chr11:102662218..102662229, -
1.22e-26FFCP PHASE1:Hg19::chr11:102662218..102662229,-#_9ec9c8c67db34fb05f9e1864e91d7f08p@chr11:102662218..102662229, -
1.46e-26FFCP PHASE1:Hg19::chr17:67875049..67875058,+#_b6bd6f90a17cc1f9a63ab7d96aa22d54p@chr17:67875049..67875058, +
1.46e-26FFCP PHASE2:Hg19::chr17:67875049..67875058,+#_b6bd6f90a17cc1f9a63ab7d96aa22d54p@chr17:67875049..67875058, +
2.34e-25FFCP PHASE2:Hg19::chr11:102668148..102668159,+#_151e32aa8a3fa3750f933b7c51d83540p@chr11:102668148..102668159, +
2.34e-25FFCP PHASE1:Hg19::chr11:102668148..102668159,+#_151e32aa8a3fa3750f933b7c51d83540p@chr11:102668148..102668159, +
3.38e-25FFCP PHASE1:Hg19::chr9:101727602..101727605,+#_22f86235800a50801c3da6d0172dc57ap@chr9:101727602..101727605, +
3.38e-25FFCP PHASE2:Hg19::chr9:101727602..101727605,+#_22f86235800a50801c3da6d0172dc57ap@chr9:101727602..101727605, +
5.83e-25FFCP PHASE2:Hg19::chr11:102668185..102668198,-#_64709a4bdeaddacef283122ddc3cda28p12@MMP1
5.83e-25FFCP PHASE1:Hg19::chr11:102668185..102668198,-#_64709a4bdeaddacef283122ddc3cda28p12@MMP1
7.02e-25FFCP PHASE2:Hg19::chr2:161237614..161237627,-#_b20112a2b896f274adf159666da4f348p@chr2:161237614..161237627, -
7.02e-25FFCP PHASE1:Hg19::chr9:3898804..3898817,-#_b20112a2b896f274adf159666da4f348p@chr9:3898804..3898817, -
7.02e-25FFCP PHASE1:Hg19::chr2:161237614..161237627,-#_b20112a2b896f274adf159666da4f348p@chr2:161237614..161237627, -
7.02e-25FFCP PHASE2:Hg19::chr9:3898804..3898817,-#_b20112a2b896f274adf159666da4f348p@chr9:3898804..3898817, -
1.47e-23FFCP PHASE1:Hg19::chr3:112081052..112081065,-#_b11036b7ddd62cdc5e0c98be466502eep@chr3:112081052..112081065, -
1.47e-23FFCP PHASE2:Hg19::chr3:112081052..112081065,-#_b11036b7ddd62cdc5e0c98be466502eep@chr3:112081052..112081065, -
2.62e-23FFCP PHASE2:Hg19::chr20:30347776..30347785,+#_bb135476239790d962947a49c0287495p11@TPX2
2.62e-23FFCP PHASE2:Hg19::chr12:2905221..2905228,+#_bb135476239790d962947a49c0287495p10@FKBP4
2.62e-23FFCP PHASE1:Hg19::chr14:78446572..78446582,+#_bb135476239790d962947a49c0287495p@chr14:78446572..78446582, +
2.62e-23FFCP PHASE1:Hg19::chr20:30347776..30347785,+#_bb135476239790d962947a49c0287495p11@TPX2
2.62e-23FFCP PHASE2:Hg19::chr14:78446572..78446582,+#_bb135476239790d962947a49c0287495p@chr14:78446572..78446582, +
2.62e-23FFCP PHASE1:Hg19::chr12:2905221..2905228,+#_bb135476239790d962947a49c0287495p10@FKBP4
2.63e-23FFCP PHASE2:Hg19::chr4:74703561..74703579,+#_8aff8ee672a8fda128dce1de71cabdc5p@chr4:74703561..74703579, +
2.63e-23FFCP PHASE1:Hg19::chr4:74703561..74703579,+#_8aff8ee672a8fda128dce1de71cabdc5p@chr4:74703561..74703579, +
3.27e-23FFCP PHASE2:Hg19::chr9:99220771..99220778,+#_2916359e3dec79351fa8c724394479d9p13@HABP4
3.27e-23FFCP PHASE2:Hg19::chr8:130735268..130735270,-#_2916359e3dec79351fa8c724394479d9p@chr8:130735268..130735270, -
3.27e-23FFCP PHASE1:Hg19::chr6:12477856..12477863,-#_2916359e3dec79351fa8c724394479d9p@chr6:12477856..12477863, -
3.27e-23FFCP PHASE1:Hg19::chr9:99220771..99220778,+#_2916359e3dec79351fa8c724394479d9p13@HABP4
3.27e-23FFCP PHASE2:Hg19::chr6:12477856..12477863,-#_2916359e3dec79351fa8c724394479d9p@chr6:12477856..12477863, -
3.27e-23FFCP PHASE1:Hg19::chr8:130735268..130735270,-#_2916359e3dec79351fa8c724394479d9p@chr8:130735268..130735270, -
4.09e-23FFCP PHASE1:Hg19::chr7:46213930..46213940,+#_5c395b35734eb8f0e1c80ab233b2d0b6p@chr7:46213930..46213940, +
4.09e-23FFCP PHASE1:Hg19::chr17:63686228..63686231,-#_5c395b35734eb8f0e1c80ab233b2d0b6p@chr17:63686228..63686231, -
4.09e-23FFCP PHASE2:Hg19::chr1:151101668..151101671,-#_5c395b35734eb8f0e1c80ab233b2d0b6p@chr1:151101668..151101671, -
4.09e-23FFCP PHASE2:Hg19::chr22:20069101..20069111,-#_5c395b35734eb8f0e1c80ab233b2d0b6p@chr22:20069101..20069111, -
4.09e-23FFCP PHASE2:Hg19::chr7:46213930..46213940,+#_5c395b35734eb8f0e1c80ab233b2d0b6p@chr7:46213930..46213940, +
4.09e-23FFCP PHASE2:Hg19::chr20:22034809..22034813,+#_5c395b35734eb8f0e1c80ab233b2d0b6p1@ENST00000449427
4.09e-23FFCP PHASE2:Hg19::chr17:63686228..63686231,-#_5c395b35734eb8f0e1c80ab233b2d0b6p@chr17:63686228..63686231, -
4.09e-23FFCP PHASE1:Hg19::chr22:20069101..20069111,-#_5c395b35734eb8f0e1c80ab233b2d0b6p@chr22:20069101..20069111, -
4.09e-23FFCP PHASE1:Hg19::chr1:151101668..151101671,-#_5c395b35734eb8f0e1c80ab233b2d0b6p@chr1:151101668..151101671, -
4.09e-23FFCP PHASE1:Hg19::chr20:22034809..22034813,+#_5c395b35734eb8f0e1c80ab233b2d0b6p1@ENST00000449427
1.09e-22FFCP PHASE2:Hg19::chr6:53359400..53359406,+#_db27c81f1b3e57ca974e624e0ded15c8p@chr6:53359400..53359406, +
1.09e-22FFCP PHASE1:Hg19::chr6:53359400..53359406,+#_db27c81f1b3e57ca974e624e0ded15c8p@chr6:53359400..53359406, +
1.58e-21FFCP PHASE2:Hg19::chr9:118916228..118916241,+#_3990d1c00beb424144addb2e6c621088p18@PAPPA
1.58e-21FFCP PHASE1:Hg19::chr9:118916228..118916241,+#_3990d1c00beb424144addb2e6c621088p18@PAPPA
1.59e-21FFCP PHASE1:Hg19::chr11:102661460..102661475,-#_402114bef6ab41338a9eb71bca377c75p@chr11:102661460..102661475, -
1.59e-21FFCP PHASE2:Hg19::chr11:102661460..102661475,-#_402114bef6ab41338a9eb71bca377c75p@chr11:102661460..102661475, -
2.71e-21FFCP PHASE2:Hg19::chr14:45251956..45251976,-#_9a97196b38f5f2200df8f79d5f697066p1@ENST00000556405
2.71e-21FFCP PHASE1:Hg19::chr14:45251956..45251976,-#_9a97196b38f5f2200df8f79d5f697066p1@ENST00000556405
3.12e-20FFCP PHASE1:Hg19::chr3:120365866..120365885,-#_c47dfb41e53fb7251c98f44b923fefafp@chr3:120365866..120365885, -
3.12e-20FFCP PHASE2:Hg19::chr3:120365866..120365885,-#_c47dfb41e53fb7251c98f44b923fefafp@chr3:120365866..120365885, -
3.86e-20FFCP PHASE2:Hg19::chr11:12182490..12182503,+#_741c455e769fa5c67993f810b34786ffp8@MICAL2
3.86e-20FFCP PHASE1:Hg19::chr11:12182490..12182503,+#_741c455e769fa5c67993f810b34786ffp8@MICAL2
8.43e-20FFCP PHASE2:Hg19::chr1:94798754..94798777,+#_be8cad99b80b4225666f5ca2514b5567p1@ENST00000418242
8.43e-20FFCP PHASE1:Hg19::chr1:94798754..94798777,+#_be8cad99b80b4225666f5ca2514b5567p1@ENST00000418242

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=CL:0002592&oldid=1836880"