CL:1000494: Difference between revisions
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|def="An epithelial cell that is part of the renal tubule." [GOC:tfm] | |def="An epithelial cell that is part of the renal tubule." [GOC:tfm] | ||
|xref=FMA:86785;;KUPO:0001022 | |xref=FMA:86785;;KUPO:0001022 | ||
|is_a=CL: | |is_a=CL:1000449;;CL:1000507 | ||
|synonym="kidney tubule epithelial cell" EXACT [] | |synonym="kidney tubule epithelial cell" EXACT [] | ||
|comment= | |comment= | ||
| Line 14: | Line 14: | ||
|obo_creation_date= | |obo_creation_date= | ||
|subset= | |subset= | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
|part_of= | |part_of= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} | ||
Revision as of 17:28, 26 June 2012
| Name: | epithelial cell of renal tubule | ||
|---|---|---|---|
| Namespace: | cell | ||
| Definition: | "An epithelial cell that is part of the renal tubule." [GOC:tfm] | ||
| Xrefs: |
| ||
| Synonyms: | "kidney tubule epithelial cell" EXACT [] |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:1000449(epithelial cell of nephron),CL:1000507(kidney tubule cell) |
|---|
Children
| is a: | CL:1000615 (kidney cortex tubule cell) |
|---|---|
| derives from: | FF:0000151 (human renal epithelial cell sample) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 11515-119H3 (Renal Proximal Tubular Epithelial Cell, donor1)
- 11516-119H4 (Renal Cortical Epithelial Cells, donor1)
- 11517-119H5 (Renal Epithelial Cells, donor1)
- 11518-119H6 (Renal Mesangial Cells, donor1)
- 11595-120H2 (Renal Proximal Tubular Epithelial Cell, donor2)
- 11596-120H3 (Renal Cortical Epithelial Cells, donor2)
- 11597-120H4 (Renal Epithelial Cells, donor2)
- 11598-120H5 (Renal Mesangial Cells, donor2)
- 11676-122H2 (Renal Proximal Tubular Epithelial Cell, donor3)
- 11677-122H3
... further results Mouse (Mus musculus)
- 11515-119H3 (Renal Proximal Tubular Epithelial Cell, donor1)
- 11516-119H4 (Renal Cortical Epithelial Cells, donor1)
- 11517-119H5 (Renal Epithelial Cells, donor1)
- 11518-119H6 (Renal Mesangial Cells, donor1)
- 11595-120H2 (Renal Proximal Tubular Epithelial Cell, donor2)
- 11596-120H3 (Renal Cortical Epithelial Cells, donor2)
- 11597-120H4 (Renal Epithelial Cells, donor2)
- 11598-120H5 (Renal Mesangial Cells, donor2)
- 11676-122H2 (Renal Proximal Tubular Epithelial Cell, donor3)
- 11677-122H3
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:1000494 (epithelial cell of renal tubule), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 3.6e-125 | FFCP PHASE1:Hg19::chr15:66420804..66420837,-#_a2d11ab92f4279f01742335d2a12b988 | p4@MEGF11 |
| 3.6e-125 | FFCP PHASE2:Hg19::chr15:66420804..66420837,-#_a2d11ab92f4279f01742335d2a12b988 | p4@MEGF11 |
| 4.27e-99 | FFCP PHASE1:Hg19::chr1:1100457..1100470,+#_ee899c43d147ff72e120562533739923 | p@chr1:1100457..1100470, + |
| 4.27e-99 | FFCP PHASE2:Hg19::chr1:1100457..1100470,+#_ee899c43d147ff72e120562533739923 | p@chr1:1100457..1100470, + |
| 6.34e-89 | FFCP PHASE2:Hg19::chr2:693380..693398,+#_8f19da73a76a06311d579cb12a15d1b0 | p@chr2:693380..693398, + |
| 6.34e-89 | FFCP PHASE1:Hg19::chr2:693380..693398,+#_8f19da73a76a06311d579cb12a15d1b0 | p@chr2:693380..693398, + |
| 6.95e-79 | FFCP PHASE1:Hg19::chr1:81001398..81001426,+#_d4f946b1a6981cf3c372161c078d38ed | p1@ENST00000418041, p1@ENST00000443104 |
| 6.95e-79 | FFCP PHASE2:Hg19::chr1:81001398..81001426,+#_d4f946b1a6981cf3c372161c078d38ed | p1@ENST00000418041, p1@ENST00000443104 |
| 1.14e-78 | FFCP PHASE2:Hg19::chr7:27219833..27219845,-#_130636b9ba0974e62055d58846c5a9e9 | p7@HOXA10 |
| 1.14e-78 | FFCP PHASE1:Hg19::chr7:27219833..27219845,-#_130636b9ba0974e62055d58846c5a9e9 | p7@HOXA10 |
| 2.82e-76 | FFCP PHASE2:Hg19::chr7:7606139..7606151,-#_dbf603f221799e349621fcdcd12adf4c | p@chr7:7606139..7606151, - |
| 2.82e-76 | FFCP PHASE1:Hg19::chr7:7606139..7606151,-#_dbf603f221799e349621fcdcd12adf4c | p@chr7:7606139..7606151, - |
| 2.46e-75 | FFCP PHASE2:Hg19::chr10:102505954..102505973,+#_0fa682311686e739ac5e6b33cd0778ae | p3@PAX2 |
| 2.46e-75 | FFCP PHASE1:Hg19::chr10:102505954..102505973,+#_0fa682311686e739ac5e6b33cd0778ae | p3@PAX2 |
| 2.88e-75 | FFCP PHASE2:Hg19::chr18:3456189..3456200,+#_eafdd04270e35d48af402d65c4681880 | p@chr18:3456189..3456200, + |
| 2.88e-75 | FFCP PHASE1:Hg19::chr18:3456189..3456200,+#_eafdd04270e35d48af402d65c4681880 | p@chr18:3456189..3456200, + |
| 1.48e-74 | FFCP PHASE1:Hg19::chr21:41029235..41029269,+#_88c062375efc512521ebb2a48ad7506a | p2@B3GALT5 |
| 1.48e-74 | FFCP PHASE2:Hg19::chr21:41029235..41029269,+#_88c062375efc512521ebb2a48ad7506a | p2@B3GALT5 |
| 2.7e-74 | FFCP PHASE2:Hg19::chr7:140227349..140227360,-#_5b667dc6a9975affbab8d276574fa00a | p@chr7:140227349..140227360, - |
| 2.7e-74 | FFCP PHASE1:Hg19::chr7:140227349..140227360,-#_5b667dc6a9975affbab8d276574fa00a | p@chr7:140227349..140227360, - |
| 5.32e-74 | FFCP PHASE2:Hg19::chr10:102495147..102495159,+#_8ce74231a7a1d46765ca3b053be9d3e1 | p4@PAX2 |
| 5.32e-74 | FFCP PHASE1:Hg19::chr10:102495147..102495159,+#_8ce74231a7a1d46765ca3b053be9d3e1 | p4@PAX2 |
| 5.85e-74 | FFCP PHASE1:Hg19::chr9:133986782..133986794,+#_2a2feb625af1b9699f3ea12aa81568b9 | p4@AIF1L |
| 5.85e-74 | FFCP PHASE2:Hg19::chr9:133986782..133986794,+#_2a2feb625af1b9699f3ea12aa81568b9 | p4@AIF1L |
| 1.31e-72 | FFCP PHASE2:Hg19::chr20:6034607..6034616,-#_dd975398345938165845a523a831f92c | p6@LRRN4 |
| 1.31e-72 | FFCP PHASE1:Hg19::chr20:6034607..6034616,-#_dd975398345938165845a523a831f92c | p6@LRRN4 |
| 1.88e-70 | FFCP PHASE1:Hg19::chr20:6033532..6033548,-#_5884e87b032578501ab9897dda27e9a1 | p2@AB527789 |
| 1.88e-70 | FFCP PHASE2:Hg19::chr20:6033532..6033548,-#_5884e87b032578501ab9897dda27e9a1 | p2@AB527789 |
| 1.06e-64 | FFCP PHASE1:Hg19::chr16:3068288..3068312,-#_819bed5b22c3ce4c1c2ffcdc6c707469 | p2@CLDN6 |
| 1.06e-64 | FFCP PHASE2:Hg19::chr16:3068288..3068312,-#_819bed5b22c3ce4c1c2ffcdc6c707469 | p2@CLDN6 |
| 2.76e-64 | FFCP PHASE2:Hg19::chr7:98453821..98453843,-#_480c03e34abccc64514de9d6ab0f2b18 | p@chr7:98453821..98453843, - |
| 2.76e-64 | FFCP PHASE1:Hg19::chr7:98453821..98453843,-#_480c03e34abccc64514de9d6ab0f2b18 | p@chr7:98453821..98453843, - |
| 1.24e-63 | FFCP PHASE1:Hg19::chr16:86604624..86604648,+#_f66b6e3c2e3c4a47f6fa518d12b2bc99 | p@chr16:86604624..86604648, + |
| 1.24e-63 | FFCP PHASE2:Hg19::chr16:86604624..86604648,+#_f66b6e3c2e3c4a47f6fa518d12b2bc99 | p@chr16:86604624..86604648, + |
| 4.48e-60 | FFCP PHASE2:Hg19::chr9:133986807..133986821,+#_9b038b5a322a6f53b00c27bd1f4abe11 | p3@AIF1L |
| 4.48e-60 | FFCP PHASE1:Hg19::chr9:133986807..133986821,+#_9b038b5a322a6f53b00c27bd1f4abe11 | p3@AIF1L |
| 1.1e-59 | FFCP PHASE2:Hg19::chr1:20465872..20465881,+#_bc533eed9d6e89d5178aaef5aa31bed0 | p2@PLA2G2F |
| 1.1e-59 | FFCP PHASE1:Hg19::chr1:20465872..20465881,+#_bc533eed9d6e89d5178aaef5aa31bed0 | p2@PLA2G2F |
| 2.05e-59 | FFCP PHASE2:Hg19::chr2:31361432..31361442,-#_b9fac2870f7390333933ca090c2bd37a | p6@GALNT14 |
| 2.05e-59 | FFCP PHASE1:Hg19::chr2:31361432..31361442,-#_b9fac2870f7390333933ca090c2bd37a | p6@GALNT14 |
| 8.36e-59 | FFCP PHASE1:Hg19::chr20:6033120..6033128,-#_bbb536a753c0205fc1a2af7d62f84c58 | p4@AB527789 |
| 8.36e-59 | FFCP PHASE2:Hg19::chr20:6033120..6033128,-#_bbb536a753c0205fc1a2af7d62f84c58 | p4@AB527789 |
| 7.62e-57 | FFCP PHASE2:Hg19::chr7:27219754..27219759,-#_7823601da81164d8b5b1140168a3c195 | p16@HOXA10 |
| 7.62e-57 | FFCP PHASE1:Hg19::chr7:27219754..27219759,-#_7823601da81164d8b5b1140168a3c195 | p16@HOXA10 |
| 1.32e-55 | FFCP PHASE2:Hg19::chr21:46826248..46826282,-#_b731af98bb3125e0c356d2b4fbfe937c | p@chr21:46826248..46826282, - |
| 1.32e-55 | FFCP PHASE1:Hg19::chr21:46826248..46826282,-#_b731af98bb3125e0c356d2b4fbfe937c | p@chr21:46826248..46826282, - |
| 6.62e-55 | FFCP PHASE2:Hg19::chr2:693362..693373,+#_4c1a8db81d0186ee6f80de24c31a5794 | p@chr2:693362..693373, + |
| 6.62e-55 | FFCP PHASE1:Hg19::chr2:693362..693373,+#_4c1a8db81d0186ee6f80de24c31a5794 | p@chr2:693362..693373, + |
| 1.99e-53 | FFCP PHASE2:Hg19::chr17:36104873..36104903,-#_67f6602f169e66d9a4168ffd87939238 | p3@HNF1B |
| 1.99e-53 | FFCP PHASE1:Hg19::chr17:36104873..36104903,-#_67f6602f169e66d9a4168ffd87939238 | p3@HNF1B |
| 7.76e-53 | FFCP PHASE2:Hg19::chr10:102505493..102505546,+#_5414e143b4e1a1ddd1374ff3e7fe0c6a | p2@PAX2 |
| 7.76e-53 | FFCP PHASE1:Hg19::chr10:102505493..102505546,+#_5414e143b4e1a1ddd1374ff3e7fe0c6a | p2@PAX2 |
| 2.69e-52 | FFCP PHASE1:Hg19::chr9:71735910..71735923,+#_48d3066d52ddb6a6a8849c5433620580 | p16@TJP2 |
| 2.69e-52 | FFCP PHASE2:Hg19::chr9:71735910..71735923,+#_48d3066d52ddb6a6a8849c5433620580 | p16@TJP2 |
| 1.51e-50 | FFCP PHASE1:Hg19::chr14:57960456..57960478,-#_8056fd4bac95a1c564bf1ec4d4e3e3d7 | p2@C14orf105 |
| 1.51e-50 | FFCP PHASE2:Hg19::chr14:57960456..57960478,-#_8056fd4bac95a1c564bf1ec4d4e3e3d7 | p2@C14orf105 |
| 2.93e-50 | FFCP PHASE1:Hg19::chr3:190105935..190105966,+#_756586d523701aec0b0068befd8916a7 | p1@CLDN16 |
| 2.93e-50 | FFCP PHASE2:Hg19::chr3:190105935..190105966,+#_756586d523701aec0b0068befd8916a7 | p1@CLDN16 |
| 4.36e-50 | FFCP PHASE1:Hg19::chr5:74244100..74244117,+#_7ad10ac94aab098cc26cf2ce60214a09 | p@chr5:74244100..74244117, + |
| 4.36e-50 | FFCP PHASE2:Hg19::chr5:74244100..74244117,+#_7ad10ac94aab098cc26cf2ce60214a09 | p@chr5:74244100..74244117, + |
| 4.9e-49 | FFCP PHASE1:Hg19::chr7:140227303..140227330,-#_eb5ced6affd2d6db0caf4090aebd17b6 | p@chr7:140227303..140227330, - |
| 4.9e-49 | FFCP PHASE2:Hg19::chr7:140227303..140227330,-#_eb5ced6affd2d6db0caf4090aebd17b6 | p@chr7:140227303..140227330, - |
| 3.7e-48 | FFCP PHASE1:Hg19::chr7:7606153..7606181,-#_1dd11bf5c2e4d820fa18d2cc1851984a | p@chr7:7606153..7606181, - |
| 3.7e-48 | FFCP PHASE2:Hg19::chr7:7606153..7606181,-#_1dd11bf5c2e4d820fa18d2cc1851984a | p@chr7:7606153..7606181, - |
| 8.06e-47 | FFCP PHASE2:Hg19::chr17:35293932..35293947,-#_f0fc059f2b70594dc300006c5354847c | p2@ENST00000529264 |
| 8.06e-47 | FFCP PHASE1:Hg19::chr17:35293932..35293947,-#_f0fc059f2b70594dc300006c5354847c | p2@ENST00000529264 |
| 8.19e-47 | FFCP PHASE1:Hg19::chr6:24358114..24358125,-#_6eb1c409f789017928b1d9e8e0c3c3f5 | p4@DCDC2 |
| 8.19e-47 | FFCP PHASE2:Hg19::chr6:24358114..24358125,-#_6eb1c409f789017928b1d9e8e0c3c3f5 | p4@DCDC2 |
| 1.44e-46 | FFCP PHASE1:Hg19::chr2:177016336..177016350,+#_48a22f059221ec81c852e31e09e027db | p1@HOXD4 |
| 1.44e-46 | FFCP PHASE2:Hg19::chr2:177016336..177016350,+#_48a22f059221ec81c852e31e09e027db | p1@HOXD4 |
| 3.39e-46 | FFCP PHASE1:Hg19::chr7:27219849..27219867,-#_282d4c2778c74d8fee673a958b2cef4d | p6@HOXA10 |
| 3.39e-46 | FFCP PHASE2:Hg19::chr7:27219849..27219867,-#_282d4c2778c74d8fee673a958b2cef4d | p6@HOXA10 |
| 5.96e-46 | FFCP PHASE1:Hg19::chr20:6034576..6034592,-#_19b268ee766e0cddfcf6f174f2622eba | p3@LRRN4 |
| 5.96e-46 | FFCP PHASE2:Hg19::chr20:6034576..6034592,-#_19b268ee766e0cddfcf6f174f2622eba | p3@LRRN4 |
| 1.77e-45 | FFCP PHASE2:Hg19::chr2:165603346..165603357,-#_4c0bd1fcadb0e312a939ab98fc28233e | p@chr2:165603346..165603357, - |
| 1.77e-45 | FFCP PHASE1:Hg19::chr2:165603346..165603357,-#_4c0bd1fcadb0e312a939ab98fc28233e | p@chr2:165603346..165603357, - |
| 5.1e-45 | FFCP PHASE2:Hg19::chr6:30890599..30890626,+#_76220e231dbd01b7aa60608d0164f4aa | p4@VARS2 |
| 5.1e-45 | FFCP PHASE1:Hg19::chr6:30890599..30890626,+#_76220e231dbd01b7aa60608d0164f4aa | p4@VARS2 |
| 5.13e-45 | FFCP PHASE1:Hg19::chr9:133986740..133986750,+#_8000ec140d6a0dbbc75d08f9f925f729 | p7@AIF1L |
| 5.13e-45 | FFCP PHASE2:Hg19::chr9:133986740..133986750,+#_8000ec140d6a0dbbc75d08f9f925f729 | p7@AIF1L |
| 5.16e-45 | FFCP PHASE1:Hg19::chr20:62327738..62327751,+#_d4136cccc6a5def983c76b1dd7380d6c | p2@TNFRSF6B |
| 5.16e-45 | FFCP PHASE2:Hg19::chr20:62327738..62327751,+#_d4136cccc6a5def983c76b1dd7380d6c | p2@TNFRSF6B |
| 6.97e-45 | FFCP PHASE1:Hg19::chr9:112260040..112260045,+#_9e97ea2cbb72d0af0ea41a1d8a07c4be | p@chr9:112260040..112260045, + |
| 6.97e-45 | FFCP PHASE2:Hg19::chr9:112260040..112260045,+#_9e97ea2cbb72d0af0ea41a1d8a07c4be | p@chr9:112260040..112260045, + |
| 7.39e-45 | FFCP PHASE1:Hg19::chr20:6034241..6034256,-#_38625507c20849f8bbf9c5488b58bb9a | p@chr20:6034241..6034256, - |
| 7.39e-45 | FFCP PHASE2:Hg19::chr20:6034241..6034256,-#_38625507c20849f8bbf9c5488b58bb9a | p@chr20:6034241..6034256, - |
| 1.28e-44 | FFCP PHASE2:Hg19::chr10:102505312..102505320,+#_a012c9f44b6e39dc3343153547b731c3 | p6@PAX2 |
| 1.28e-44 | FFCP PHASE1:Hg19::chr10:102505312..102505320,+#_a012c9f44b6e39dc3343153547b731c3 | p6@PAX2 |
| 1.67e-44 | FFCP PHASE1:Hg19::chr9:119741711..119741743,-#_52fe1ca10a06304f686d719d1231c582 | p@chr9:119741711..119741743, - |
| 1.67e-44 | FFCP PHASE2:Hg19::chr9:119741711..119741743,-#_52fe1ca10a06304f686d719d1231c582 | p@chr9:119741711..119741743, - |
| 4.94e-44 | FFCP PHASE1:Hg19::chr7:27160553..27160560,+#_00c7efeede4165c99aae62f007507325 | p1@ENST00000523364, p1@uc010kux.1 |
| 4.94e-44 | FFCP PHASE2:Hg19::chr7:27160553..27160560,+#_00c7efeede4165c99aae62f007507325 | p1@ENST00000523364, p1@uc010kux.1 |
| 9.32e-44 | FFCP PHASE1:Hg19::chr11:117688216..117688234,-#_8af1d529bb535f0d5b5b94181d437e3b | p2@DSCAML1 |
| 9.32e-44 | FFCP PHASE2:Hg19::chr11:117688216..117688234,-#_8af1d529bb535f0d5b5b94181d437e3b | p2@DSCAML1 |
| 1.2e-43 | FFCP PHASE1:Hg19::chr1:47655966..47655990,-#_443628df499801a74e927016ab1f68c1 | p2@PDZK1IP1 |
| 1.2e-43 | FFCP PHASE2:Hg19::chr1:47655966..47655990,-#_443628df499801a74e927016ab1f68c1 | p2@PDZK1IP1 |
| 1.45e-43 | FFCP PHASE1:Hg19::chr11:117695245..117695263,-#_93a1037bab9f5f65e2c6f5d665f3786d | p7@FXYD2 |
| 1.45e-43 | FFCP PHASE2:Hg19::chr11:117695245..117695263,-#_93a1037bab9f5f65e2c6f5d665f3786d | p7@FXYD2 |
| 5.15e-43 | FFCP PHASE1:Hg19::chr10:91043420..91043437,+#_277b0d60a41c461faaf03037d3f163b5 | p1@ENST00000444849 |
| 5.15e-43 | FFCP PHASE2:Hg19::chr10:91043420..91043437,+#_277b0d60a41c461faaf03037d3f163b5 | p1@ENST00000444849 |
