CL:1000612: Difference between revisions
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|def= | |def= | ||
|xref=KUPO:0001021 | |xref=KUPO:0001021 | ||
|is_a=CL:0002584 | |is_a=CL:0002584;;CL:1000449 | ||
|synonym= | |synonym= | ||
|comment= | |comment= | ||
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|obo_creation_date= | |obo_creation_date= | ||
|subset= | |subset= | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
|part_of= | |part_of= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} | ||
Revision as of 17:28, 26 June 2012
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0002584(renal cortical epithelial cell),CL:1000449(epithelial cell of nephron) |
|---|
Children
| is a: | CL:1000746 (glomerular cell) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 11514-119H2 (Renal Glomerular Endothelial Cells, donor1)
- 11518-119H6 (Renal Mesangial Cells, donor1)
- 11590-120G6 (Alveolar Epithelial Cells, donor2)
- 11594-120H1 (Renal Glomerular Endothelial Cells, donor2)
- 11598-120H5 (Renal Mesangial Cells, donor2)
- 11675-122H1 (Renal Glomerular Endothelial Cells, donor3)
- 11679-122H5 (Renal Mesangial Cells, donor3)
- 11783-124B1 (Renal Glomerular Endothelial Cells, donor4)
Mouse (Mus musculus)
- 11514-119H2 (Renal Glomerular Endothelial Cells, donor1)
- 11518-119H6 (Renal Mesangial Cells, donor1)
- 11590-120G6 (Alveolar Epithelial Cells, donor2)
- 11594-120H1 (Renal Glomerular Endothelial Cells, donor2)
- 11598-120H5 (Renal Mesangial Cells, donor2)
- 11675-122H1 (Renal Glomerular Endothelial Cells, donor3)
- 11679-122H5 (Renal Mesangial Cells, donor3)
- 11783-124B1 (Renal Glomerular Endothelial Cells, donor4)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:1000612 (kidney corpuscule cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 6.87e-64 | FFCP PHASE2:Hg19::chr2:120409486..120409492,+#_0bfdb6e55d95f72c1a465453b7041946 | p@chr2:120409486..120409492, + |
| 6.87e-64 | FFCP PHASE1:Hg19::chr2:120409486..120409492,+#_0bfdb6e55d95f72c1a465453b7041946 | p@chr2:120409486..120409492, + |
| 9.62e-40 | FFCP PHASE1:Hg19::chr1:94713418..94713436,+#_2bcdb3d37c32d98e5b6e58671a442932 | p1@ENST00000413103 |
| 9.62e-40 | FFCP PHASE2:Hg19::chr1:94713418..94713436,+#_2bcdb3d37c32d98e5b6e58671a442932 | p1@ENST00000413103 |
| 1.16e-36 | FFCP PHASE1:Hg19::chr17:79426453..79426462,+#_9e9777055de224505469cadf31fdf681 | p@chr17:79426453..79426462, + |
| 1.16e-36 | FFCP PHASE2:Hg19::chr17:79426453..79426462,+#_9e9777055de224505469cadf31fdf681 | p@chr17:79426453..79426462, + |
| 1.31e-36 | FFCP PHASE2:Hg19::chr8:77557753..77557755,-#_ce9dece9ece0daea13add328789a1ad5 | p@chr8:77557753..77557755, - |
| 1.31e-36 | FFCP PHASE1:Hg19::chr8:77557753..77557755,-#_ce9dece9ece0daea13add328789a1ad5 | p@chr8:77557753..77557755, - |
| 5.58e-32 | FFCP PHASE1:Hg19::chr1:32042764..32042776,+#_0f36a8a947919688901eb15f9d085370 | p6@TINAGL1 |
| 5.58e-32 | FFCP PHASE2:Hg19::chr1:32042764..32042776,+#_0f36a8a947919688901eb15f9d085370 | p6@TINAGL1 |
| 1.53e-30 | FFCP PHASE2:Hg19::chr15:91416076..91416089,+#_20223f541d7a42d5270189d472a256ab | p9@FURIN |
| 1.53e-30 | FFCP PHASE1:Hg19::chr15:91416076..91416089,+#_20223f541d7a42d5270189d472a256ab | p9@FURIN |
| 3.83e-30 | FFCP PHASE2:Hg19::chr20:6034598..6034603,-#_d946f891c51626b6db123d943596c795 | p7@LRRN4 |
| 3.83e-30 | FFCP PHASE1:Hg19::chr20:6034598..6034603,-#_d946f891c51626b6db123d943596c795 | p7@LRRN4 |
| 1.78e-29 | FFCP PHASE1:Hg19::chr1:42777312..42777314,+#_4ef650ab95535b00a5be80bc1f44bdea | p@chr1:42777312..42777314, + |
| 1.78e-29 | FFCP PHASE1:Hg19::chr2:26700984..26700993,-#_4ef650ab95535b00a5be80bc1f44bdea | p7@OTOF |
| 1.78e-29 | FFCP PHASE1:Hg19::chr6:18225523..18225534,-#_4ef650ab95535b00a5be80bc1f44bdea | p@chr6:18225523..18225534, - |
| 1.78e-29 | FFCP PHASE2:Hg19::chr22:47030082..47030087,+#_4ef650ab95535b00a5be80bc1f44bdea | p@chr22:47030082..47030087, + |
| 1.78e-29 | FFCP PHASE1:Hg19::chr2:26700331..26700340,-#_4ef650ab95535b00a5be80bc1f44bdea | p@chr2:26700331..26700340, - |
| 1.78e-29 | FFCP PHASE2:Hg19::chr1:42777312..42777314,+#_4ef650ab95535b00a5be80bc1f44bdea | p@chr1:42777312..42777314, + |
| 1.78e-29 | FFCP PHASE1:Hg19::chr22:47030082..47030087,+#_4ef650ab95535b00a5be80bc1f44bdea | p@chr22:47030082..47030087, + |
| 1.78e-29 | FFCP PHASE2:Hg19::chr2:26700984..26700993,-#_4ef650ab95535b00a5be80bc1f44bdea | p7@OTOF |
| 1.78e-29 | FFCP PHASE2:Hg19::chr6:18225523..18225534,-#_4ef650ab95535b00a5be80bc1f44bdea | p@chr6:18225523..18225534, - |
| 1.78e-29 | FFCP PHASE2:Hg19::chr2:26700331..26700340,-#_4ef650ab95535b00a5be80bc1f44bdea | p@chr2:26700331..26700340, - |
| 7.96e-27 | FFCP PHASE1:Hg19::chr10:3477893..3477912,-#_56d5665b5591dbb299d6a5edcea7fb65 | p@chr10:3477893..3477912, - |
| 7.96e-27 | FFCP PHASE2:Hg19::chr10:3477893..3477912,-#_56d5665b5591dbb299d6a5edcea7fb65 | p@chr10:3477893..3477912, - |
| 6.29e-26 | FFCP PHASE2:Hg19::chr1:172926077..172926120,-#_7d65d4f373af415db783fe0440a89de8 | p@chr1:172926077..172926120, - |
| 6.29e-26 | FFCP PHASE1:Hg19::chr1:172926077..172926120,-#_7d65d4f373af415db783fe0440a89de8 | p@chr1:172926077..172926120, - |
| 6.32e-26 | FFCP PHASE1:Hg19::chrX:128782722..128782738,-#_01160fbc31a95732a31b477e357199cf | p5@APLN |
| 6.32e-26 | FFCP PHASE2:Hg19::chrX:128782722..128782738,-#_01160fbc31a95732a31b477e357199cf | p5@APLN |
| 9.89e-26 | FFCP PHASE1:Hg19::chr2:693380..693398,+#_e0acb2972d1cddb76014315cd7ebbb54 | p@chr2:693380..693398, + |
| 9.89e-26 | FFCP PHASE2:Hg19::chr2:693380..693398,+#_e0acb2972d1cddb76014315cd7ebbb54 | p@chr2:693380..693398, + |
| 1.28e-23 | FFCP PHASE2:Hg19::chr2:133426030..133426041,-#_117cbd8d55530dbf2b1d4d5bec404520 | p@chr2:133426030..133426041, - |
| 1.28e-23 | FFCP PHASE1:Hg19::chr6:84849252..84849259,+#_117cbd8d55530dbf2b1d4d5bec404520 | p@chr6:84849252..84849259, + |
| 1.28e-23 | FFCP PHASE1:Hg19::chr2:133426030..133426041,-#_117cbd8d55530dbf2b1d4d5bec404520 | p@chr2:133426030..133426041, - |
| 1.28e-23 | FFCP PHASE2:Hg19::chr6:84849252..84849259,+#_117cbd8d55530dbf2b1d4d5bec404520 | p@chr6:84849252..84849259, + |
| 1.44e-23 | FFCP PHASE1:Hg19::chr1:51791596..51791607,-#_6f264bb58973af5eafca5dff340f2235 | p23@TTC39A |
| 1.44e-23 | FFCP PHASE1:Hg19::chr7:28998254..28998261,-#_6f264bb58973af5eafca5dff340f2235 | p10@TRIL |
| 1.44e-23 | FFCP PHASE2:Hg19::chr1:51791596..51791607,-#_6f264bb58973af5eafca5dff340f2235 | p23@TTC39A |
| 1.44e-23 | FFCP PHASE2:Hg19::chr7:28998254..28998261,-#_6f264bb58973af5eafca5dff340f2235 | p10@TRIL |
| 1.61e-23 | FFCP PHASE1:Hg19::chr7:4051097..4051112,+#_7e560f9fb068a3d3288556bd208b90dc | p@chr7:4051097..4051112, + |
| 1.61e-23 | FFCP PHASE1:Hg19::chr15:85403302..85403304,+#_7e560f9fb068a3d3288556bd208b90dc | p@chr15:85403302..85403304, + |
| 1.61e-23 | FFCP PHASE2:Hg19::chr7:4051097..4051112,+#_7e560f9fb068a3d3288556bd208b90dc | p@chr7:4051097..4051112, + |
| 1.61e-23 | FFCP PHASE2:Hg19::chr15:85403302..85403304,+#_7e560f9fb068a3d3288556bd208b90dc | p@chr15:85403302..85403304, + |
| 1.8e-23 | FFCP PHASE1:Hg19::chr16:2141529..2141537,+#_fa60f09f2bffffe6b6e7acf6e792f15e | p@chr16:2141529..2141537, + |
| 1.8e-23 | FFCP PHASE2:Hg19::chr16:2141529..2141537,+#_fa60f09f2bffffe6b6e7acf6e792f15e | p@chr16:2141529..2141537, + |
| 2.92e-22 | FFCP PHASE2:Hg19::chr5:74244100..74244117,+#_51caae4a72d75d089973627c6b1598ee | p@chr5:74244100..74244117, + |
| 2.92e-22 | FFCP PHASE1:Hg19::chr5:74244100..74244117,+#_51caae4a72d75d089973627c6b1598ee | p@chr5:74244100..74244117, + |
| 5.69e-22 | FFCP PHASE1:Hg19::chr5:148651758..148651769,-#_aaea6f534c53600107d8e0e71b4bea5c | p@chr5:148651758..148651769, - |
| 5.69e-22 | FFCP PHASE2:Hg19::chr5:148651758..148651769,-#_aaea6f534c53600107d8e0e71b4bea5c | p@chr5:148651758..148651769, - |
| 2.9e-21 | FFCP PHASE2:Hg19::chr16:86768403..86768437,+#_6dff9deee217008654813094df98188b | p@chr16:86768403..86768437, + |
| 2.9e-21 | FFCP PHASE1:Hg19::chr16:86768403..86768437,+#_6dff9deee217008654813094df98188b | p@chr16:86768403..86768437, + |
| 4.78e-21 | FFCP PHASE2:Hg19::chr17:2076002..2076026,-#_3b407618c06357b04dcfb0b42968a4ad | p@chr17:2076002..2076026, - |
| 4.78e-21 | FFCP PHASE1:Hg19::chr17:2076002..2076026,-#_3b407618c06357b04dcfb0b42968a4ad | p@chr17:2076002..2076026, - |
| 1.26e-20 | FFCP PHASE1:Hg19::chr1:32712897..32712909,+#_aa3f312c6074d99c2c3ecefb0d269b01 | p3@FAM167B |
| 1.26e-20 | FFCP PHASE2:Hg19::chr1:32712897..32712909,+#_aa3f312c6074d99c2c3ecefb0d269b01 | p3@FAM167B |
| 2.32e-20 | FFCP PHASE2:Hg19::chr11:124628392..124628427,-#_416ce3649f586b64fdb324bc867f513f | p@chr11:124628392..124628427, - |
| 2.32e-20 | FFCP PHASE1:Hg19::chr11:124628392..124628427,-#_416ce3649f586b64fdb324bc867f513f | p@chr11:124628392..124628427, - |
| 3.42e-20 | FFCP PHASE2:Hg19::chr3:98591021..98591026,-#_ebe203b5b6c159e35322ef4e31a6e1e4 | p1@ENST00000487339 |
| 3.42e-20 | FFCP PHASE1:Hg19::chr3:98591021..98591026,-#_ebe203b5b6c159e35322ef4e31a6e1e4 | p1@ENST00000487339 |
| 3.44e-20 | FFCP PHASE1:Hg19::chr19:47231340..47231383,-#_61809778daea180a80523bcdec484a72 | p@chr19:47231340..47231383, - |
| 3.44e-20 | FFCP PHASE2:Hg19::chr19:47231340..47231383,-#_61809778daea180a80523bcdec484a72 | p@chr19:47231340..47231383, - |
| 3.58e-20 | FFCP PHASE1:Hg19::chr19:1826957..1826984,-#_47e75f0399974389d88e57fbf1740ab7 | p@chr19:1826957..1826984, - |
| 3.58e-20 | FFCP PHASE2:Hg19::chr19:1826957..1826984,-#_47e75f0399974389d88e57fbf1740ab7 | p@chr19:1826957..1826984, - |
| 4.39e-20 | FFCP PHASE1:Hg19::chr4:38057595..38057624,-#_8c271299c8e364cf187dd0d605537013 | p@chr4:38057595..38057624, - |
| 4.39e-20 | FFCP PHASE2:Hg19::chr4:38057595..38057624,-#_8c271299c8e364cf187dd0d605537013 | p@chr4:38057595..38057624, - |
| 7.13e-20 | FFCP PHASE1:Hg19::chr2:133426106..133426117,-#_6b4dc059571713b55c0e746f3a2748fd | p@chr2:133426106..133426117, - |
| 7.13e-20 | FFCP PHASE2:Hg19::chr2:133426106..133426117,-#_6b4dc059571713b55c0e746f3a2748fd | p@chr2:133426106..133426117, - |
| 7.84e-20 | FFCP PHASE2:Hg19::chr9:35753821..35753835,-#_74fd0ab2bb91f30012fdfb01137921f0 | p@chr9:35753821..35753835, - |
| 7.84e-20 | FFCP PHASE1:Hg19::chr15:36653709..36653720,-#_74fd0ab2bb91f30012fdfb01137921f0 | p@chr15:36653709..36653720, - |
| 7.84e-20 | FFCP PHASE2:Hg19::chr15:36653709..36653720,-#_74fd0ab2bb91f30012fdfb01137921f0 | p@chr15:36653709..36653720, - |
| 7.84e-20 | FFCP PHASE1:Hg19::chr9:35753821..35753835,-#_74fd0ab2bb91f30012fdfb01137921f0 | p@chr9:35753821..35753835, - |
| 8.62e-20 | FFCP PHASE1:Hg19::chr4:145568170..145568180,-#_1810a571ef388255d195d9af843c9859 | p@chr4:145568170..145568180, - |
| 8.62e-20 | FFCP PHASE2:Hg19::chr4:145568170..145568180,-#_1810a571ef388255d195d9af843c9859 | p@chr4:145568170..145568180, - |
| 1.04e-19 | FFCP PHASE2:Hg19::chr19:38397228..38397266,-#_bae9e6d8acd60fb88378805b277d1319 | p1@WDR87 |
| 1.04e-19 | FFCP PHASE1:Hg19::chr19:38397228..38397266,-#_bae9e6d8acd60fb88378805b277d1319 | p1@WDR87 |
| 1.15e-19 | FFCP PHASE1:Hg19::chr14:91270270..91270281,-#_7fb5415f41f9b715d5d72bcc0240a37f | p@chr14:91270270..91270281, - |
| 1.15e-19 | FFCP PHASE2:Hg19::chr14:91270270..91270281,-#_7fb5415f41f9b715d5d72bcc0240a37f | p@chr14:91270270..91270281, - |
| 2.44e-19 | FFCP PHASE2:Hg19::chr12:52306196..52306215,+#_967e3a26bd953610ae5ac1439db6fd96 | p6@ACVRL1 |
| 2.44e-19 | FFCP PHASE1:Hg19::chr12:52306196..52306215,+#_967e3a26bd953610ae5ac1439db6fd96 | p6@ACVRL1 |
| 3.27e-19 | FFCP PHASE2:Hg19::chr3:43538305..43538325,-#_58711ffe18372530515ac16c78f9fa21 | p@chr3:43538305..43538325, - |
| 3.27e-19 | FFCP PHASE1:Hg19::chr3:43538305..43538325,-#_58711ffe18372530515ac16c78f9fa21 | p@chr3:43538305..43538325, - |
| 4.64e-19 | FFCP PHASE1:Hg19::chr17:171147..171161,+#_ffa3ad2621e0ab965c5ff9eca48523cc | p@chr17:171147..171161, + |
| 4.64e-19 | FFCP PHASE2:Hg19::chr17:171147..171161,+#_ffa3ad2621e0ab965c5ff9eca48523cc | p@chr17:171147..171161, + |
| 5.39e-19 | FFCP PHASE1:Hg19::chr1:22211913..22211920,+#_87e8a2ee97b501fc9a0d03610add198a | p@chr1:22211913..22211920, + |
| 5.39e-19 | FFCP PHASE2:Hg19::chr1:22211913..22211920,+#_87e8a2ee97b501fc9a0d03610add198a | p@chr1:22211913..22211920, + |
| 1.99e-18 | FFCP PHASE1:Hg19::chr7:27219833..27219845,-#_3bfc5e9f1c11acca8bd3f308c144bff1 | p7@HOXA10 |
| 1.99e-18 | FFCP PHASE2:Hg19::chr7:27219833..27219845,-#_3bfc5e9f1c11acca8bd3f308c144bff1 | p7@HOXA10 |
| 2.69e-18 | FFCP PHASE2:Hg19::chr1:32041957..32041990,+#_53017bfa21f4851125d8eeb8f3c43cf9 | p3@TINAGL1 |
| 2.69e-18 | FFCP PHASE1:Hg19::chr1:32041957..32041990,+#_53017bfa21f4851125d8eeb8f3c43cf9 | p3@TINAGL1 |
| 4.1e-18 | FFCP PHASE2:Hg19::chr6:132270228..132270243,-#_eff30da5a6ddef64bb91eb219546a977 | p17@CTGF |
| 4.1e-18 | FFCP PHASE1:Hg19::chr6:132270228..132270243,-#_eff30da5a6ddef64bb91eb219546a977 | p17@CTGF |
| 5.7e-18 | FFCP PHASE2:Hg19::chr11:940729..940745,+#_bd4c11c9ed14173e8d475889236f6715 | p5@AP2A2 |
| 5.7e-18 | FFCP PHASE1:Hg19::chr11:940729..940745,+#_bd4c11c9ed14173e8d475889236f6715 | p5@AP2A2 |
| 6.5e-18 | FFCP PHASE2:Hg19::chr19:42007093..42007107,-#_7979e0d7c10e333ab9763906776b0cab | p@chr19:42007093..42007107, - |
| 6.5e-18 | FFCP PHASE1:Hg19::chr19:42007093..42007107,-#_7979e0d7c10e333ab9763906776b0cab | p@chr19:42007093..42007107, - |
| 6.99e-18 | FFCP PHASE2:Hg19::chrX:128781853..128781866,-#_ba57cc41b4072a84a6772cd35842109b | p@chrX:128781853..128781866, - |
| 6.99e-18 | FFCP PHASE1:Hg19::chrX:128781853..128781866,-#_ba57cc41b4072a84a6772cd35842109b | p@chrX:128781853..128781866, - |
| 1.24e-17 | FFCP PHASE1:Hg19::chr16:86604624..86604648,+#_241f3dc2fe0d7276ffaae22ff85e3722 | p@chr16:86604624..86604648, + |
| 1.24e-17 | FFCP PHASE2:Hg19::chr16:86604624..86604648,+#_241f3dc2fe0d7276ffaae22ff85e3722 | p@chr16:86604624..86604648, + |
