CL:0002539: Difference between revisions
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|part_of= | |part_of=UBERON:0004178 | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl | ||
|is_obsolete= | |is_obsolete= | ||
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Revision as of 13:04, 27 June 2012
| Name: | aortic smooth muscle cell | ||
|---|---|---|---|
| Namespace: | cell | ||
| Definition: | "A smooth muscle cell of the aorta." [GOC:tfm] | ||
| Xrefs: |
| ||
| Created by: | tmeehan | ||
| Creation date: | 2011-02-28T01:42:12Z |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000359(vascular associated smooth muscle cell) |
|---|---|
| part_of: | UBERON:0004178(aorta smooth muscle tissue) |
Children
| is a: | FF:0000017 (canine aortic smooth muscle cell),FF:0000033 (chicken aortic smooth muscle cell),FF:0000148 (rat aortic smooth muscle cell) |
|---|---|
| derives from: | FF:0000104 (mouse aortic smooth muscle cell sample),FF:0000168 (human aortic smooth muscle cell sample),FF:0000546 (human Aortic Smooth Muscle cells 0min after treatment with FGF2 sample),FF:0000547 (human Aortic Smooth Muscle cells 15min after treatment with FGF2 sample),FF:0000548 (human Aortic Smooth Muscle cells 30min after treatment with FGF2 sample),FF:0000549 (human Aortic Smooth Muscle cells 45min after treatment with FGF2 sample),FF:0000550 (human Aortic Smooth Muscle cells 1hr after treatment with FGF2 sample),FF:0000551 (human Aortic Smooth Muscle cells 2hr after treatment with FGF2 sample),FF:0000552 (human Aortic Smooth Muscle cells 3hr after treatment with FGF2 sample),FF:0000553 (human Aortic Smooth Muscle cells 4hr after treatment with FGF2 sample),FF:0000554 (human Aortic Smooth Muscle cells 5hr after treatment with FGF2 sample),FF:0000555 (human Aortic Smooth Muscle cells 6hr after treatment with FGF2 sample),FF:0000556 (human Aortic Smooth Muscle cells 0min after treatment with IL1b sample),FF:0000557 (human Aortic Smooth Muscle cells 15min after treatment with IL1b sample),FF:0000558 (human Aortic Smooth Muscle cells 30min after treatment with IL1b sample),FF:0000559 (human Aortic Smooth Muscle cells 45min after treatment with IL1b sample),FF:0000560 (human Aortic Smooth Muscle cells 1hr after treatment with IL1b sample),FF:0000561 (human Aortic Smooth Muscle cells 2hr after treatment with IL1b sample),FF:0000562 (human Aortic Smooth Muscle cells 3hr after treatment with IL1b sample),FF:0000563 (human Aortic Smooth Muscle cells 4hr after treatment with IL1b sample),FF:0000564 (human Aortic Smooth Muscle cells 5hr after treatment with IL1b sample),FF:0000565 (human Aortic Smooth Muscle cells 6hr after treatment with IL1b sample) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 11210-116A4 (Smooth Muscle Cells - Aortic, donor0)
- 11244-116E2 (Canine hepatocytes, donor1)
- 11283-116I5 (Smooth Muscle Cells - Aortic, donor1)
- 11297-117B1 (Canine Aortic Smooth Muscle cells, donor1)
- 11298-117B2 (Chicken Aortic Smooth Muscle cells, donor1)
- 11299-117B3 (Mouse Aortic Smooth Muscle cells, donor1)
- 11300-117B4 (Rat Aortic Smooth Muscle cells, donor1)
- 11325-117E2 (Canine hepatocytes, donor2)
- 11360-117I1 (Smooth Muscle Cells - Aortic, donor2)
- 11374-118A6 (Canine Aortic Smooth Muscle cells, donor2)
... further results Mouse (Mus musculus)
- 11210-116A4 (Smooth Muscle Cells - Aortic, donor0)
- 11244-116E2 (Canine hepatocytes, donor1)
- 11283-116I5 (Smooth Muscle Cells - Aortic, donor1)
- 11297-117B1 (Canine Aortic Smooth Muscle cells, donor1)
- 11298-117B2 (Chicken Aortic Smooth Muscle cells, donor1)
- 11299-117B3 (Mouse Aortic Smooth Muscle cells, donor1)
- 11300-117B4 (Rat Aortic Smooth Muscle cells, donor1)
- 11325-117E2 (Canine hepatocytes, donor2)
- 11360-117I1 (Smooth Muscle Cells - Aortic, donor2)
- 11374-118A6 (Canine Aortic Smooth Muscle cells, donor2)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002539 (aortic smooth muscle cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.58e-86 | FFCP PHASE2:Mm9::chr11:50416871..50416882,+#_da8ed2b52c783fc488cc3440c810193d | p5@Adamts2 |
| 1.58e-86 | FFCP PHASE1:Mm9::chr11:50416871..50416882,+#_da8ed2b52c783fc488cc3440c810193d | p5@Adamts2 |
| 1.58e-86 | FFCP PHASE2:Mm9::chr8:69228447..69228492,+#_da8ed2b52c783fc488cc3440c810193d | p@chr8:69228447..69228492, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr2:178190171..178190178,+#_da8ed2b52c783fc488cc3440c810193d | p@chr2:178190171..178190178, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr17:14827154..14827169,-#_da8ed2b52c783fc488cc3440c810193d | p@chr17:14827154..14827169, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr17:14802633..14802637,-#_da8ed2b52c783fc488cc3440c810193d | p@chr17:14802633..14802637, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr2:112043522..112043530,-#_da8ed2b52c783fc488cc3440c810193d | p@chr2:112043522..112043530, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr17:14827154..14827169,-#_da8ed2b52c783fc488cc3440c810193d | p@chr17:14827154..14827169, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr17:14802633..14802637,-#_da8ed2b52c783fc488cc3440c810193d | p@chr17:14802633..14802637, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chrX:160839744..160839754,+#_da8ed2b52c783fc488cc3440c810193d | p@chrX:160839744..160839754, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr17:87574327..87574332,+#_da8ed2b52c783fc488cc3440c810193d | p@chr17:87574327..87574332, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr17:87574327..87574332,+#_da8ed2b52c783fc488cc3440c810193d | p@chr17:87574327..87574332, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr2:112043522..112043530,-#_da8ed2b52c783fc488cc3440c810193d | p@chr2:112043522..112043530, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr2:178190171..178190178,+#_da8ed2b52c783fc488cc3440c810193d | p@chr2:178190171..178190178, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chrX:160839744..160839754,+#_da8ed2b52c783fc488cc3440c810193d | p@chrX:160839744..160839754, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr8:69228447..69228492,+#_da8ed2b52c783fc488cc3440c810193d | p@chr8:69228447..69228492, + |
| 5.79e-79 | FFCP PHASE2:Hg19::chr1:110429102..110429103,+#_8bd6d35378c3baea16d855a8bb71b614 | p@chr1:110429102..110429103, + |
| 5.79e-79 | FFCP PHASE1:Hg19::chr1:110429102..110429103,+#_8bd6d35378c3baea16d855a8bb71b614 | p@chr1:110429102..110429103, + |
| 1.33e-65 | FFCP PHASE1:Mm9::chr17:71340031..71340044,-#_c312fb4b369ca1a25207837d30fdce38 | p5@Myl12b |
| 1.33e-65 | FFCP PHASE2:Mm9::chr11:118164535..118164544,-#_c312fb4b369ca1a25207837d30fdce38 | p@chr11:118164535..118164544, - |
| 1.33e-65 | FFCP PHASE2:Mm9::chrX:160840025..160840037,+#_c312fb4b369ca1a25207837d30fdce38 | p@chrX:160840025..160840037, + |
| 1.33e-65 | FFCP PHASE1:Mm9::chrX:160840025..160840037,+#_c312fb4b369ca1a25207837d30fdce38 | p@chrX:160840025..160840037, + |
| 1.33e-65 | FFCP PHASE2:Mm9::chr6:128920492..128920498,-#_c312fb4b369ca1a25207837d30fdce38 | p@chr6:128920492..128920498, - |
| 1.33e-65 | FFCP PHASE2:Mm9::chrX:160840048..160840057,+#_c312fb4b369ca1a25207837d30fdce38 | p@chrX:160840048..160840057, + |
| 1.33e-65 | FFCP PHASE1:Mm9::chr6:128920492..128920498,-#_c312fb4b369ca1a25207837d30fdce38 | p@chr6:128920492..128920498, - |
| 1.33e-65 | FFCP PHASE1:Mm9::chrX:160840048..160840057,+#_c312fb4b369ca1a25207837d30fdce38 | p@chrX:160840048..160840057, + |
| 1.33e-65 | FFCP PHASE2:Mm9::chr17:71340031..71340044,-#_c312fb4b369ca1a25207837d30fdce38 | p5@Myl12b |
| 1.33e-65 | FFCP PHASE1:Mm9::chr11:118164535..118164544,-#_c312fb4b369ca1a25207837d30fdce38 | p@chr11:118164535..118164544, - |
| 1.33e-65 | FFCP PHASE1:Mm9::chr8:69221163..69221172,+#_c312fb4b369ca1a25207837d30fdce38 | p6@Npy1r |
| 1.33e-65 | FFCP PHASE2:Mm9::chr8:69221163..69221172,+#_c312fb4b369ca1a25207837d30fdce38 | p6@Npy1r |
| 2.21e-65 | FFCP PHASE2:Mm9::chr4:145000183..145000220,+#_850fdf534d2363b97dc005b55c6234e2 | p1@ENSMUST00000150529 |
| 2.21e-65 | FFCP PHASE1:Mm9::chr4:145000183..145000220,+#_850fdf534d2363b97dc005b55c6234e2 | p1@ENSMUST00000150529 |
| 3.28e-58 | FFCP PHASE1:Mm9::chr10:33816181..33816195,-#_7528cf54b187d2986ab496a0195afd81 | p@chr10:33816181..33816195, - |
| 3.28e-58 | FFCP PHASE1:Mm9::chr14:24251697..24251707,+#_7528cf54b187d2986ab496a0195afd81 | p@chr14:24251697..24251707, + |
| 3.28e-58 | FFCP PHASE2:Mm9::chr17:14817013..14817022,-#_7528cf54b187d2986ab496a0195afd81 | p@chr17:14817013..14817022, - |
| 3.28e-58 | FFCP PHASE1:Mm9::chr8:69857155..69857159,+#_7528cf54b187d2986ab496a0195afd81 | p@chr8:69857155..69857159, + |
| 3.28e-58 | FFCP PHASE2:Mm9::chr8:69857155..69857159,+#_7528cf54b187d2986ab496a0195afd81 | p@chr8:69857155..69857159, + |
| 3.28e-58 | FFCP PHASE2:Mm9::chr14:24251697..24251707,+#_7528cf54b187d2986ab496a0195afd81 | p@chr14:24251697..24251707, + |
| 3.28e-58 | FFCP PHASE1:Mm9::chr10:96946110..96946113,+#_7528cf54b187d2986ab496a0195afd81 | p@chr10:96946110..96946113, + |
| 3.28e-58 | FFCP PHASE2:Mm9::chr10:96946110..96946113,+#_7528cf54b187d2986ab496a0195afd81 | p@chr10:96946110..96946113, + |
| 3.28e-58 | FFCP PHASE1:Mm9::chr17:87544959..87544962,+#_7528cf54b187d2986ab496a0195afd81 | p@chr17:87544959..87544962, + |
| 3.28e-58 | FFCP PHASE2:Mm9::chr17:87544959..87544962,+#_7528cf54b187d2986ab496a0195afd81 | p@chr17:87544959..87544962, + |
| 3.28e-58 | FFCP PHASE2:Mm9::chr17:78907550..78907557,+#_7528cf54b187d2986ab496a0195afd81 | p8@Vit |
| 3.28e-58 | FFCP PHASE2:Mm9::chrX:160839012..160839023,+#_7528cf54b187d2986ab496a0195afd81 | p@chrX:160839012..160839023, + |
| 3.28e-58 | FFCP PHASE2:Mm9::chr1:127573425..127573432,+#_7528cf54b187d2986ab496a0195afd81 | p12@Gpr39 |
| 3.28e-58 | FFCP PHASE1:Mm9::chr1:127573425..127573432,+#_7528cf54b187d2986ab496a0195afd81 | p12@Gpr39 |
| 3.28e-58 | FFCP PHASE1:Mm9::chr17:78907550..78907557,+#_7528cf54b187d2986ab496a0195afd81 | p8@Vit |
| 3.28e-58 | FFCP PHASE2:Mm9::chrX:160811352..160811356,-#_7528cf54b187d2986ab496a0195afd81 | p@chrX:160811352..160811356, - |
| 3.28e-58 | FFCP PHASE2:Mm9::chr10:33816181..33816195,-#_7528cf54b187d2986ab496a0195afd81 | p@chr10:33816181..33816195, - |
| 3.28e-58 | FFCP PHASE1:Mm9::chrX:160811352..160811356,-#_7528cf54b187d2986ab496a0195afd81 | p@chrX:160811352..160811356, - |
| 3.28e-58 | FFCP PHASE1:Mm9::chrX:160839012..160839023,+#_7528cf54b187d2986ab496a0195afd81 | p@chrX:160839012..160839023, + |
| 3.28e-58 | FFCP PHASE1:Mm9::chr17:14817013..14817022,-#_7528cf54b187d2986ab496a0195afd81 | p@chr17:14817013..14817022, - |
| 1.26e-55 | FFCP PHASE2:Hg19::chr6:53359400..53359406,+#_c20c6c761cf8bc0a643320251d95d440 | p@chr6:53359400..53359406, + |
| 1.26e-55 | FFCP PHASE1:Hg19::chr6:53359400..53359406,+#_c20c6c761cf8bc0a643320251d95d440 | p@chr6:53359400..53359406, + |
| 4.9e-53 | FFCP PHASE1:Mm9::chr7:91081998..91082010,-#_0629a62a960d5ca8df99e182be007bb5 | p@chr7:91081998..91082010, - |
| 4.9e-53 | FFCP PHASE1:Mm9::chr10:67821185..67821217,-#_0629a62a960d5ca8df99e182be007bb5 | p@chr10:67821185..67821217, - |
| 4.9e-53 | FFCP PHASE2:Mm9::chr10:67821185..67821217,-#_0629a62a960d5ca8df99e182be007bb5 | p@chr10:67821185..67821217, - |
| 4.9e-53 | FFCP PHASE1:Mm9::chr17:29227828..29227839,-#_0629a62a960d5ca8df99e182be007bb5 | p@chr17:29227828..29227839, - |
| 4.9e-53 | FFCP PHASE2:Mm9::chr2:113589030..113589077,-#_0629a62a960d5ca8df99e182be007bb5 | p@chr2:113589030..113589077, - |
| 4.9e-53 | FFCP PHASE1:Mm9::chr14:24251717..24251731,+#_0629a62a960d5ca8df99e182be007bb5 | p@chr14:24251717..24251731, + |
| 4.9e-53 | FFCP PHASE1:Mm9::chr8:69221150..69221161,+#_0629a62a960d5ca8df99e182be007bb5 | p5@Npy1r |
| 4.9e-53 | FFCP PHASE1:Mm9::chr10:67598037..67598049,-#_0629a62a960d5ca8df99e182be007bb5 | p@chr10:67598037..67598049, - |
| 4.9e-53 | FFCP PHASE2:Mm9::chr14:24251717..24251731,+#_0629a62a960d5ca8df99e182be007bb5 | p@chr14:24251717..24251731, + |
| 4.9e-53 | FFCP PHASE2:Mm9::chr8:69221150..69221161,+#_0629a62a960d5ca8df99e182be007bb5 | p5@Npy1r |
| 4.9e-53 | FFCP PHASE2:Mm9::chr7:91081998..91082010,-#_0629a62a960d5ca8df99e182be007bb5 | p@chr7:91081998..91082010, - |
| 4.9e-53 | FFCP PHASE2:Mm9::chr17:29227828..29227839,-#_0629a62a960d5ca8df99e182be007bb5 | p@chr17:29227828..29227839, - |
| 4.9e-53 | FFCP PHASE2:Mm9::chr13:113253807..113253846,+#_0629a62a960d5ca8df99e182be007bb5 | p4@Il6st |
| 4.9e-53 | FFCP PHASE1:Mm9::chr13:113253807..113253846,+#_0629a62a960d5ca8df99e182be007bb5 | p4@Il6st |
| 4.9e-53 | FFCP PHASE2:Mm9::chr10:67598037..67598049,-#_0629a62a960d5ca8df99e182be007bb5 | p@chr10:67598037..67598049, - |
| 4.9e-53 | FFCP PHASE1:Mm9::chr2:113589030..113589077,-#_0629a62a960d5ca8df99e182be007bb5 | p@chr2:113589030..113589077, - |
| 7.35e-53 | FFCP PHASE2:Mm9::chr4:58219542..58219545,-#_6edb641d9ea57a8ab5a29761569df68e | p11@Svep1 |
| 7.35e-53 | FFCP PHASE1:Mm9::chr4:58219542..58219545,-#_6edb641d9ea57a8ab5a29761569df68e | p11@Svep1 |
| 1.1e-52 | FFCP PHASE2:Mm9::chrX:160838787..160838800,+#_2a0a2fc931e602e6767879d8e086da27 | p@chrX:160838787..160838800, + |
| 1.1e-52 | FFCP PHASE1:Mm9::chrX:160838787..160838800,+#_2a0a2fc931e602e6767879d8e086da27 | p@chrX:160838787..160838800, + |
| 1.65e-52 | FFCP PHASE2:Mm9::chr1:137662814..137662817,+#_faf6bad4292249e8f40e7c03515c360e | p5@Phlda3 |
| 1.65e-52 | FFCP PHASE1:Mm9::chr1:137662814..137662817,+#_faf6bad4292249e8f40e7c03515c360e | p5@Phlda3 |
| 5.51e-52 | FFCP PHASE2:Mm9::chr2:65009852..65009866,-#_54c7a521ca0ff56dcf701f4addc6ae50 | p@chr2:65009852..65009866, - |
| 5.51e-52 | FFCP PHASE1:Mm9::chr2:65009852..65009866,-#_54c7a521ca0ff56dcf701f4addc6ae50 | p@chr2:65009852..65009866, - |
| 1.18e-44 | FFCP PHASE1:Mm9::chrX:160838683..160838694,+#_57fefcd4f2079473157c50c6ce0bf61b | p@chrX:160838683..160838694, + |
| 1.18e-44 | FFCP PHASE1:Mm9::chr13:119579287..119579292,+#_57fefcd4f2079473157c50c6ce0bf61b | p@chr13:119579287..119579292, + |
| 1.18e-44 | FFCP PHASE2:Mm9::chr11:86417559..86417568,+#_57fefcd4f2079473157c50c6ce0bf61b | p@chr11:86417559..86417568, + |
| 1.18e-44 | FFCP PHASE2:Mm9::chr1:127573864..127573879,+#_57fefcd4f2079473157c50c6ce0bf61b | p10@Gpr39 |
| 1.18e-44 | FFCP PHASE1:Mm9::chr1:127573864..127573879,+#_57fefcd4f2079473157c50c6ce0bf61b | p10@Gpr39 |
| 1.18e-44 | FFCP PHASE1:Mm9::chr17:14813242..14813246,-#_57fefcd4f2079473157c50c6ce0bf61b | p@chr17:14813242..14813246, - |
| 1.18e-44 | FFCP PHASE1:Mm9::chr11:86417559..86417568,+#_57fefcd4f2079473157c50c6ce0bf61b | p@chr11:86417559..86417568, + |
| 1.18e-44 | FFCP PHASE1:Mm9::chr2:178190136..178190151,+#_57fefcd4f2079473157c50c6ce0bf61b | p@chr2:178190136..178190151, + |
| 1.18e-44 | FFCP PHASE2:Mm9::chr17:14813242..14813246,-#_57fefcd4f2079473157c50c6ce0bf61b | p@chr17:14813242..14813246, - |
| 1.18e-44 | FFCP PHASE2:Mm9::chr13:119579287..119579292,+#_57fefcd4f2079473157c50c6ce0bf61b | p@chr13:119579287..119579292, + |
| 1.18e-44 | FFCP PHASE2:Mm9::chrX:160838683..160838694,+#_57fefcd4f2079473157c50c6ce0bf61b | p@chrX:160838683..160838694, + |
| 1.18e-44 | FFCP PHASE2:Mm9::chr2:178190136..178190151,+#_57fefcd4f2079473157c50c6ce0bf61b | p@chr2:178190136..178190151, + |
| 1.66e-44 | FFCP PHASE1:Mm9::chr13:119503185..119503195,+#_7234c2dd47e2eaaf93e972d268eb77f5 | p9@Fgf10 |
| 1.66e-44 | FFCP PHASE2:Mm9::chrX:160839663..160839673,+#_7234c2dd47e2eaaf93e972d268eb77f5 | p@chrX:160839663..160839673, + |
| 1.66e-44 | FFCP PHASE1:Mm9::chrX:160839663..160839673,+#_7234c2dd47e2eaaf93e972d268eb77f5 | p@chrX:160839663..160839673, + |
| 1.66e-44 | FFCP PHASE2:Mm9::chr13:119503185..119503195,+#_7234c2dd47e2eaaf93e972d268eb77f5 | p9@Fgf10 |
| 2.33e-44 | FFCP PHASE2:Mm9::chr17:75790300..75790304,+#_db1dd6fff6a81fef588dda2360540692 | p@chr17:75790300..75790304, + |
| 2.33e-44 | FFCP PHASE1:Mm9::chr17:75790300..75790304,+#_db1dd6fff6a81fef588dda2360540692 | p@chr17:75790300..75790304, + |
| 3.27e-44 | FFCP PHASE2:Mm9::chr1:127573708..127573719,+#_05a6e45a31fef1480793222371eac322 | p9@Gpr39 |
| 3.27e-44 | FFCP PHASE1:Mm9::chr1:127573708..127573719,+#_05a6e45a31fef1480793222371eac322 | p9@Gpr39 |
| 4.58e-44 | FFCP PHASE1:Mm9::chr17:14813991..14813999,+#_706ecd93da33e45b18861d9fedf09f70 | p@chr17:14813991..14813999, + |
| 4.58e-44 | FFCP PHASE2:Mm9::chr17:14813991..14813999,+#_706ecd93da33e45b18861d9fedf09f70 | p@chr17:14813991..14813999, + |
