Personal tools

UBERON:0001678: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 18: Line 18:
|has_quality=
|has_quality=
|located_in=
|located_in=
|part_of=
|part_of=UBERON:0004339
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|is_obsolete=
|preceded_by=
|preceded_by=
}}
}}

Revision as of 13:29, 27 June 2012

Name:temporal bone
Definition:"The temporal bones are situated at the sides and base of the skull, and lateral to the temporal lobes of the cerebrum." [Wikipedia:Temporal_bone]
Xrefs:
links:

EHDAA:6035
EMAPA:17682
EMAPA:18020
FMA:52737
GAID:232
[1]
[2]
MA:0001476
MESH:A.02.835.232.781.885
ncithesaurus:Temporal_Bone
OpenCyc:Mx4rvbkAk5wpEbGdrcN5Y29ycA
SCTID:181795004

VHOG:0000800
Synonyms: "os temporale" RELATED LATIN [Wikipedia:Temporal_bone]
Comments:The temporal bone consists of four parts: * Squama temporalis * Mastoid portion * Petrous portion (Petrosal ridge) * Tympanic part[WP]. AO notes: Note the Temporal bone is not explicitly categorized to a part of the cranium in FMA. Taxon notes: fusion of squamosal + angular (tympanic annulus) [derm] + petrosal (prootic + opisthotic)[chond] + styloid process[splanc.]
Alt_id: UBERON:FMA_52737-MA_0001476
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0004766(cranial bone),UBERON:0008193(pneumatized bone)
part_of:UBERON:0004339(calvarium)



Children

part of:UBERON:0001694 (petrous part of temporal bone)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Mouse (Mus musculus)

  • 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
  • 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
  • 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)
  • 12216-129E2 (Inner ear stem cells, 4th generation stem cells, pool1)
  • 12217-129E3 (Inner ear stem cells, differentiation, day03, pool1)
  • 12218-129E4 (Inner ear stem cells, differentiation, day10, pool1)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001678 (temporal bone), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.87e-86FFCP PHASE1:Mm9::chr15:85334335..85334353,+#_329b6ed7138a6c61a2ec9877f02c3792p@chr15:85334335..85334353, +
1.87e-86FFCP PHASE2:Mm9::chr8:125802236..125802251,-#_329b6ed7138a6c61a2ec9877f02c3792p3@Fanca
1.87e-86FFCP PHASE1:Mm9::chr13:37195838..37195870,-#_329b6ed7138a6c61a2ec9877f02c3792p@chr13:37195838..37195870, -
1.87e-86FFCP PHASE2:Mm9::chr3:35012397..35012405,+#_329b6ed7138a6c61a2ec9877f02c3792p@chr3:35012397..35012405, +
1.87e-86FFCP PHASE2:Mm9::chr4:115556972..115556979,+#_329b6ed7138a6c61a2ec9877f02c3792p3@Kncn
1.87e-86FFCP PHASE2:Mm9::chr17:13983102..13983126,+#_329b6ed7138a6c61a2ec9877f02c3792p@chr17:13983102..13983126, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207852..42207876,-#_329b6ed7138a6c61a2ec9877f02c3792p2@Tecta
1.87e-86FFCP PHASE1:Mm9::chr7:29733825..29733837,-#_329b6ed7138a6c61a2ec9877f02c3792p@chr7:29733825..29733837, -
1.87e-86FFCP PHASE1:Mm9::chr1:93235228..93235249,+#_329b6ed7138a6c61a2ec9877f02c3792p@chr1:93235228..93235249, +
1.87e-86FFCP PHASE2:Mm9::chr9:42206730..42206739,-#_329b6ed7138a6c61a2ec9877f02c3792p@chr9:42206730..42206739, -
1.87e-86FFCP PHASE1:Mm9::chr12:13508046..13508055,+#_329b6ed7138a6c61a2ec9877f02c3792p@chr12:13508046..13508055, +
1.87e-86FFCP PHASE2:Mm9::chr13:78257454..78257465,+#_329b6ed7138a6c61a2ec9877f02c3792p@chr13:78257454..78257465, +
1.87e-86FFCP PHASE2:Mm9::chr13:48087761..48087775,-#_329b6ed7138a6c61a2ec9877f02c3792p@chr13:48087761..48087775, -
1.87e-86FFCP PHASE1:Mm9::chr7:109052262..109052291,-#_329b6ed7138a6c61a2ec9877f02c3792p1@Tomt
1.87e-86FFCP PHASE1:Mm9::chr2:152453066..152453075,-#_329b6ed7138a6c61a2ec9877f02c3792p@chr2:152453066..152453075, -
1.87e-86FFCP PHASE1:Mm9::chr11:11599532..11599539,-#_329b6ed7138a6c61a2ec9877f02c3792p@chr11:11599532..11599539, -
1.87e-86FFCP PHASE2:Mm9::chr3:69811606..69811616,+#_329b6ed7138a6c61a2ec9877f02c3792p2@Otol1
1.87e-86FFCP PHASE1:Mm9::chr5:28035962..28035983,+#_329b6ed7138a6c61a2ec9877f02c3792p@chr5:28035962..28035983, +
1.87e-86FFCP PHASE1:Mm9::chr4:101908153..101908163,+#_329b6ed7138a6c61a2ec9877f02c3792p@chr4:101908153..101908163, +
1.87e-86FFCP PHASE2:Mm9::chr18:81327205..81327211,+#_329b6ed7138a6c61a2ec9877f02c3792p@chr18:81327205..81327211, +
1.87e-86FFCP PHASE2:Mm9::chr11:11599532..11599539,-#_329b6ed7138a6c61a2ec9877f02c3792p@chr11:11599532..11599539, -
1.87e-86FFCP PHASE1:Mm9::chr10:107349309..107349318,-#_329b6ed7138a6c61a2ec9877f02c3792p4@Otogl
1.87e-86FFCP PHASE2:Mm9::chr12:77084875..77084885,+#_329b6ed7138a6c61a2ec9877f02c3792p@chr12:77084875..77084885, +
1.87e-86FFCP PHASE1:Mm9::chr9:42206730..42206739,-#_329b6ed7138a6c61a2ec9877f02c3792p@chr9:42206730..42206739, -
1.87e-86FFCP PHASE1:Mm9::chr1:63733478..63733491,-#_329b6ed7138a6c61a2ec9877f02c3792p1@Dytn
1.87e-86FFCP PHASE2:Mm9::chr1:93218682..93218691,+#_329b6ed7138a6c61a2ec9877f02c3792p2@Espnl
1.87e-86FFCP PHASE2:Mm9::chr11:4689776..4689785,-#_329b6ed7138a6c61a2ec9877f02c3792p@chr11:4689776..4689785, -
1.87e-86FFCP PHASE2:Mm9::chr4:154208086..154208123,+#_329b6ed7138a6c61a2ec9877f02c3792p@chr4:154208086..154208123, +
1.87e-86FFCP PHASE2:Mm9::chr15:85334335..85334353,+#_329b6ed7138a6c61a2ec9877f02c3792p@chr15:85334335..85334353, +
1.87e-86FFCP PHASE2:Mm9::chr6:113251614..113251623,+#_329b6ed7138a6c61a2ec9877f02c3792p@chr6:113251614..113251623, +
1.87e-86FFCP PHASE2:Mm9::chr9:42208023..42208043,-#_329b6ed7138a6c61a2ec9877f02c3792p4@Tecta
1.87e-86FFCP PHASE1:Mm9::chr6:86746562..86746579,-#_329b6ed7138a6c61a2ec9877f02c3792p@chr6:86746562..86746579, -
1.87e-86FFCP PHASE2:Mm9::chr1:63733478..63733491,-#_329b6ed7138a6c61a2ec9877f02c3792p1@Dytn
1.87e-86FFCP PHASE1:Mm9::chrX:154140781..154140788,+#_329b6ed7138a6c61a2ec9877f02c3792p@chrX:154140781..154140788, +
1.87e-86FFCP PHASE1:Mm9::chr3:69811606..69811616,+#_329b6ed7138a6c61a2ec9877f02c3792p2@Otol1
1.87e-86FFCP PHASE1:Mm9::chr2:29935952..29935993,+#_329b6ed7138a6c61a2ec9877f02c3792p7@Pkn3
1.87e-86FFCP PHASE2:Mm9::chr18:38104702..38104718,-#_329b6ed7138a6c61a2ec9877f02c3792p@chr18:38104702..38104718, -
1.87e-86FFCP PHASE1:Mm9::chr3:106986057..106986062,+#_329b6ed7138a6c61a2ec9877f02c3792p1@Kcna10
1.87e-86FFCP PHASE2:Mm9::chr3:154459246..154459253,+#_329b6ed7138a6c61a2ec9877f02c3792p@chr3:154459246..154459253, +
1.87e-86FFCP PHASE2:Mm9::chrX:154140800..154140810,+#_329b6ed7138a6c61a2ec9877f02c3792p@chrX:154140800..154140810, +
1.87e-86FFCP PHASE1:Mm9::chr1:172843885..172843890,-#_329b6ed7138a6c61a2ec9877f02c3792p@chr1:172843885..172843890, -
1.87e-86FFCP PHASE2:Mm9::chr18:59222033..59222043,+#_329b6ed7138a6c61a2ec9877f02c3792p7@A730017C20Rik
1.87e-86FFCP PHASE2:Mm9::chr1:43454162..43454170,-#_329b6ed7138a6c61a2ec9877f02c3792p@chr1:43454162..43454170, -
1.87e-86FFCP PHASE2:Mm9::chr10:107349418..107349423,-#_329b6ed7138a6c61a2ec9877f02c3792p5@Otogl
1.87e-86FFCP PHASE2:Mm9::chr17:31335869..31335899,-#_329b6ed7138a6c61a2ec9877f02c3792p1@Tmprss3
1.87e-86FFCP PHASE2:Mm9::chr14:47293487..47293493,-#_329b6ed7138a6c61a2ec9877f02c3792p@chr14:47293487..47293493, -
1.87e-86FFCP PHASE1:Mm9::chr9:42208023..42208043,-#_329b6ed7138a6c61a2ec9877f02c3792p4@Tecta
1.87e-86FFCP PHASE2:Mm9::chr6:86745686..86745727,-#_329b6ed7138a6c61a2ec9877f02c3792p@chr6:86745686..86745727, -
1.87e-86FFCP PHASE2:Mm9::chr9:42207697..42207705,-#_329b6ed7138a6c61a2ec9877f02c3792p@chr9:42207697..42207705, -
1.87e-86FFCP PHASE1:Mm9::chr2:121206695..121206711,-#_329b6ed7138a6c61a2ec9877f02c3792p1@Strc
1.87e-86FFCP PHASE1:Mm9::chr3:154693281..154693317,-#_329b6ed7138a6c61a2ec9877f02c3792p@chr3:154693281..154693317, -
1.87e-86FFCP PHASE1:Mm9::chr7:109265277..109265288,-#_329b6ed7138a6c61a2ec9877f02c3792p4@Chrna10
1.87e-86FFCP PHASE2:Mm9::chr7:88068153..88068160,-#_329b6ed7138a6c61a2ec9877f02c3792p10@Sec11a
1.87e-86FFCP PHASE1:Mm9::chr5:3909290..3909299,+#_329b6ed7138a6c61a2ec9877f02c3792p@chr5:3909290..3909299, +
1.87e-86FFCP PHASE1:Mm9::chr4:115556939..115556945,+#_329b6ed7138a6c61a2ec9877f02c3792p4@Kncn
1.87e-86FFCP PHASE2:Mm9::chr1:194818647..194818660,-#_329b6ed7138a6c61a2ec9877f02c3792p@chr1:194818647..194818660, -
1.87e-86FFCP PHASE2:Mm9::chr5:68423014..68423037,+#_329b6ed7138a6c61a2ec9877f02c3792p1@Grxcr1
1.87e-86FFCP PHASE1:Mm9::chr9:42207697..42207705,-#_329b6ed7138a6c61a2ec9877f02c3792p@chr9:42207697..42207705, -
1.87e-86FFCP PHASE1:Mm9::chr7:27964761..27964768,+#_329b6ed7138a6c61a2ec9877f02c3792p@chr7:27964761..27964768, +
1.87e-86FFCP PHASE2:Mm9::chr9:50968647..50968668,-#_329b6ed7138a6c61a2ec9877f02c3792p@chr9:50968647..50968668, -
1.87e-86FFCP PHASE2:Mm9::chr5:3909290..3909299,+#_329b6ed7138a6c61a2ec9877f02c3792p@chr5:3909290..3909299, +
1.87e-86FFCP PHASE1:Mm9::chr11:114603036..114603048,+#_329b6ed7138a6c61a2ec9877f02c3792p@chr11:114603036..114603048, +
1.87e-86FFCP PHASE1:Mm9::chr5:150945209..150945220,+#_329b6ed7138a6c61a2ec9877f02c3792p@chr5:150945209..150945220, +
1.87e-86FFCP PHASE1:Mm9::chr9:41495920..41495928,-#_329b6ed7138a6c61a2ec9877f02c3792p@chr9:41495920..41495928, -
1.87e-86FFCP PHASE1:Mm9::chr2:53464178..53464186,+#_329b6ed7138a6c61a2ec9877f02c3792p@chr2:53464178..53464186, +
1.87e-86FFCP PHASE2:Mm9::chr10:80806047..80806059,-#_329b6ed7138a6c61a2ec9877f02c3792p4@Gipc3
1.87e-86FFCP PHASE1:Mm9::chr4:151505798..151505818,-#_329b6ed7138a6c61a2ec9877f02c3792p21@Espn
1.87e-86FFCP PHASE2:Mm9::chr9:92087926..92087938,+#_329b6ed7138a6c61a2ec9877f02c3792p2@Plscr5
1.87e-86FFCP PHASE2:Mm9::chr3:58626291..58626298,-#_329b6ed7138a6c61a2ec9877f02c3792p@chr3:58626291..58626298, -
1.87e-86FFCP PHASE1:Mm9::chr9:56208792..56208814,-#_329b6ed7138a6c61a2ec9877f02c3792p@chr9:56208792..56208814, -
1.87e-86FFCP PHASE1:Mm9::chr15:58480061..58480066,+#_329b6ed7138a6c61a2ec9877f02c3792p5@Fer1l6
1.87e-86FFCP PHASE1:Mm9::chr19:55256373..55256384,+#_329b6ed7138a6c61a2ec9877f02c3792p@chr19:55256373..55256384, +
1.87e-86FFCP PHASE1:Mm9::chr13:78322370..78322376,-#_329b6ed7138a6c61a2ec9877f02c3792p4@uc007rhb.1
1.87e-86FFCP PHASE2:Mm9::chr1:172843813..172843834,-#_329b6ed7138a6c61a2ec9877f02c3792p@chr1:172843813..172843834, -
1.87e-86FFCP PHASE1:Mm9::chr1:182528371..182528385,+#_329b6ed7138a6c61a2ec9877f02c3792p@chr1:182528371..182528385, +
1.87e-86FFCP PHASE1:Mm9::chr14:31283085..31283097,-#_329b6ed7138a6c61a2ec9877f02c3792p@chr14:31283085..31283097, -
1.87e-86FFCP PHASE1:Mm9::chr11:4689837..4689845,-#_329b6ed7138a6c61a2ec9877f02c3792p@chr11:4689837..4689845, -
1.87e-86FFCP PHASE2:Mm9::chr4:130461150..130461185,+#_329b6ed7138a6c61a2ec9877f02c3792p@chr4:130461150..130461185, +
1.87e-86FFCP PHASE1:Mm9::chr6:113251614..113251623,+#_329b6ed7138a6c61a2ec9877f02c3792p@chr6:113251614..113251623, +
1.87e-86FFCP PHASE1:Mm9::chr19:10536767..10536777,-#_329b6ed7138a6c61a2ec9877f02c3792p@chr19:10536767..10536777, -
1.87e-86FFCP PHASE1:Mm9::chr17:13983102..13983126,+#_329b6ed7138a6c61a2ec9877f02c3792p@chr17:13983102..13983126, +
1.87e-86FFCP PHASE2:Mm9::chr3:100724698..100724706,+#_329b6ed7138a6c61a2ec9877f02c3792p@chr3:100724698..100724706, +
1.87e-86FFCP PHASE2:Mm9::chr6:30619378..30619412,-#_329b6ed7138a6c61a2ec9877f02c3792p11@Tsga14
1.87e-86FFCP PHASE1:Mm9::chr15:103146966..103146971,-#_329b6ed7138a6c61a2ec9877f02c3792p@chr15:103146966..103146971, -
1.87e-86FFCP PHASE2:Mm9::chr19:10536797..10536802,-#_329b6ed7138a6c61a2ec9877f02c3792p@chr19:10536797..10536802, -
1.87e-86FFCP PHASE2:Mm9::chr9:56208792..56208814,-#_329b6ed7138a6c61a2ec9877f02c3792p@chr9:56208792..56208814, -
1.87e-86FFCP PHASE2:Mm9::chr9:42207887..42207960,-#_329b6ed7138a6c61a2ec9877f02c3792p1@Tecta
1.87e-86FFCP PHASE2:Mm9::chr3:106986057..106986062,+#_329b6ed7138a6c61a2ec9877f02c3792p1@Kcna10
1.87e-86FFCP PHASE1:Mm9::chr3:35012397..35012405,+#_329b6ed7138a6c61a2ec9877f02c3792p@chr3:35012397..35012405, +
1.87e-86FFCP PHASE1:Mm9::chr15:89215306..89215315,+#_329b6ed7138a6c61a2ec9877f02c3792p@chr15:89215306..89215315, +
1.87e-86FFCP PHASE2:Mm9::chr11:102123535..102123544,+#_329b6ed7138a6c61a2ec9877f02c3792p5@BC030867
1.87e-86FFCP PHASE1:Mm9::chr16:93971325..93971337,-#_329b6ed7138a6c61a2ec9877f02c3792p@chr16:93971325..93971337, -
1.87e-86FFCP PHASE2:Mm9::chr3:35012425..35012439,+#_329b6ed7138a6c61a2ec9877f02c3792p@chr3:35012425..35012439, +
1.87e-86FFCP PHASE2:Mm9::chr4:115556989..115556997,+#_329b6ed7138a6c61a2ec9877f02c3792p1@Kncn
1.87e-86FFCP PHASE2:Mm9::chr17:13983160..13983167,+#_329b6ed7138a6c61a2ec9877f02c3792p@chr17:13983160..13983167, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207887..42207960,-#_329b6ed7138a6c61a2ec9877f02c3792p1@Tecta
1.87e-86FFCP PHASE1:Mm9::chr1:93235253..93235264,+#_329b6ed7138a6c61a2ec9877f02c3792p@chr1:93235253..93235264, +
1.87e-86FFCP PHASE2:Mm9::chr9:42206745..42206774,-#_329b6ed7138a6c61a2ec9877f02c3792p@chr9:42206745..42206774, -
1.87e-86FFCP PHASE2:Mm9::chr19:55255206..55255223,+#_329b6ed7138a6c61a2ec9877f02c3792p1@Tectb
1.87e-86FFCP PHASE1:Mm9::chr12:13572961..13572974,+#_329b6ed7138a6c61a2ec9877f02c3792p@chr12:13572961..13572974, +

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0001678&oldid=1837437"