UBERON:0004637: Difference between revisions
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|subset= | |subset= | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from=UBERON:0010351 | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
|part_of= | |part_of=UBERON:0001694;;UBERON:0001703;;UBERON:0001846 | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Skeletal elements surrounding the membranous labyrinth of the inner ear. Sensory capsules anterolateral to and confluent with occipital arch.[AAO]" xsd:string;;UBPROP:0000002 "relationship loss: part_of occipito-petrosal (AAO:0010831)[AAO]" xsd:string;;UBPROP:0000002 "relationship loss: part_of otic and occipital (AAO:0000993)[AAO]" xsd:string | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Skeletal elements surrounding the membranous labyrinth of the inner ear. Sensory capsules anterolateral to and confluent with occipital arch.[AAO]" xsd:string;;UBPROP:0000002 "relationship loss: part_of occipito-petrosal (AAO:0010831)[AAO]" xsd:string;;UBPROP:0000002 "relationship loss: part_of otic and occipital (AAO:0000993)[AAO]" xsd:string | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} | ||
Latest revision as of 13:36, 27 June 2012
| Name: | otic capsule | ||
|---|---|---|---|
| Definition: | "The capsule surrounding the inner ear mechanism; in elasmobranchs, it remains cartilaginous in the adult; in the embryos of higher vertebrates, it is cartilaginous at first but later becomes bony (at approximately 23 weeks in humans)[Biology-Online]. Bilaterally paired cartilage encasing the semicircular canals of the inner ear[ZFA]." http://www.biology-online.org/dictionary/Otic_capsule, ZFA:0001500 | ||
| Xrefs: |
| ||
| Synonyms: |
"auditory capsule" RELATED [VHOG:0000854] "otic capsule" EXACT [ZFA:0001500] "periotic" RELATED [] "periotic capsule" RELATED [VHOG:0000854] | ||
| Comments: | Taxon notes: developmental relationships need to be checked |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000020(sense organ),UBERON:0004120(mesoderm-derived structure),UBERON:0004121(ectoderm-derived structure),UBERON:0004765(skeletal element),UBERON:0010314(structure with developmental contribution from neural crest) |
|---|---|
| develops_from: | UBERON:0010351(otic capsule cartilage condensation) |
| part_of: | UBERON:0001694(petrous part of temporal bone),UBERON:0001703(neurocranium),UBERON:0001846(internal ear) |
Children
| part of: | UBERON:0010113 (future membranous labyrinth) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004637 (otic capsule), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.87e-86 | FFCP PHASE2:Mm9::chr6:113251606..113251613,+#_ef0848008da7a18a37873e78b0320066 | p@chr6:113251606..113251613, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr13:58283583..58283607,-#_ef0848008da7a18a37873e78b0320066 | p@chr13:58283583..58283607, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:170417150..170417155,-#_ef0848008da7a18a37873e78b0320066 | p@chr2:170417150..170417155, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:42206745..42206774,-#_ef0848008da7a18a37873e78b0320066 | p@chr9:42206745..42206774, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:67011921..67011934,+#_ef0848008da7a18a37873e78b0320066 | p2@Gm1322 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr14:63099970..63099980,-#_ef0848008da7a18a37873e78b0320066 | p@chr14:63099970..63099980, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr18:66033526..66033539,-#_ef0848008da7a18a37873e78b0320066 | p@chr18:66033526..66033539, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr14:31283085..31283097,-#_ef0848008da7a18a37873e78b0320066 | p@chr14:31283085..31283097, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr17:31335869..31335899,-#_ef0848008da7a18a37873e78b0320066 | p1@Tmprss3 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:29733825..29733837,-#_ef0848008da7a18a37873e78b0320066 | p@chr7:29733825..29733837, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr3:69811590..69811601,+#_ef0848008da7a18a37873e78b0320066 | p1@Otol1 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:66860888..66860899,+#_ef0848008da7a18a37873e78b0320066 | p@chr9:66860888..66860899, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr19:22767090..22767099,+#_ef0848008da7a18a37873e78b0320066 | p18@Trpm3 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr18:81314626..81314636,+#_ef0848008da7a18a37873e78b0320066 | p@chr18:81314626..81314636, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:75320183..75320189,+#_ef0848008da7a18a37873e78b0320066 | p@chr2:75320183..75320189, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr7:109052297..109052300,-#_ef0848008da7a18a37873e78b0320066 | p2@Tomt |
| 1.87e-86 | FFCP PHASE1:Mm9::chr5:30710403..30710406,-#_ef0848008da7a18a37873e78b0320066 | p10@Otof |
| 1.87e-86 | FFCP PHASE1:Mm9::chr14:47293487..47293493,-#_ef0848008da7a18a37873e78b0320066 | p@chr14:47293487..47293493, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr3:154459231..154459240,+#_ef0848008da7a18a37873e78b0320066 | p@chr3:154459231..154459240, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:67011956..67011967,+#_ef0848008da7a18a37873e78b0320066 | p1@Gm1322 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr11:120222470..120222516,+#_ef0848008da7a18a37873e78b0320066 | p2@Fscn2 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:42207998..42208009,-#_ef0848008da7a18a37873e78b0320066 | p6@Tecta |
| 1.87e-86 | FFCP PHASE1:Mm9::chr12:13508015..13508019,+#_ef0848008da7a18a37873e78b0320066 | p@chr12:13508015..13508019, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr16:96494788..96494801,+#_ef0848008da7a18a37873e78b0320066 | p12@B3galt5 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:128881546..128881553,-#_ef0848008da7a18a37873e78b0320066 | p@chr2:128881546..128881553, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr12:13508015..13508019,+#_ef0848008da7a18a37873e78b0320066 | p@chr12:13508015..13508019, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chrX:154140800..154140810,+#_ef0848008da7a18a37873e78b0320066 | p@chrX:154140800..154140810, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr3:81012915..81012923,+#_ef0848008da7a18a37873e78b0320066 | p@chr3:81012915..81012923, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr13:43699228..43699239,+#_ef0848008da7a18a37873e78b0320066 | p@chr13:43699228..43699239, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr15:58022966..58022995,-#_ef0848008da7a18a37873e78b0320066 | p@chr15:58022966..58022995, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:42207397..42207408,-#_ef0848008da7a18a37873e78b0320066 | p@chr9:42207397..42207408, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr10:107349430..107349440,-#_ef0848008da7a18a37873e78b0320066 | p3@Otogl |
| 1.87e-86 | FFCP PHASE1:Mm9::chr18:81314626..81314636,+#_ef0848008da7a18a37873e78b0320066 | p@chr18:81314626..81314636, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:42208142..42208157,-#_ef0848008da7a18a37873e78b0320066 | p10@Tecta |
| 1.87e-86 | FFCP PHASE2:Mm9::chrX:154140781..154140788,+#_ef0848008da7a18a37873e78b0320066 | p@chrX:154140781..154140788, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr13:76964459..76964469,+#_ef0848008da7a18a37873e78b0320066 | p15@Mctp1 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr10:67371994..67372010,+#_ef0848008da7a18a37873e78b0320066 | p@chr10:67371994..67372010, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr3:58626291..58626298,-#_ef0848008da7a18a37873e78b0320066 | p@chr3:58626291..58626298, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr7:133957514..133957529,+#_ef0848008da7a18a37873e78b0320066 | p@chr7:133957514..133957529, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr5:3909310..3909321,+#_ef0848008da7a18a37873e78b0320066 | p@chr5:3909310..3909321, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr4:115556972..115556979,+#_ef0848008da7a18a37873e78b0320066 | p3@Kncn |
| 1.87e-86 | FFCP PHASE1:Mm9::chr16:45693840..45693856,-#_ef0848008da7a18a37873e78b0320066 | p1@Tmprss7 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr4:133802857..133802884,+#_ef0848008da7a18a37873e78b0320066 | p@chr4:133802857..133802884, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:42207777..42207789,-#_ef0848008da7a18a37873e78b0320066 | p7@Tecta |
| 1.87e-86 | FFCP PHASE2:Mm9::chr13:78322383..78322395,-#_ef0848008da7a18a37873e78b0320066 | p2@uc007rhb.1 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr1:182528388..182528403,+#_ef0848008da7a18a37873e78b0320066 | p@chr1:182528388..182528403, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr19:4140290..4140321,+#_ef0848008da7a18a37873e78b0320066 | p2@Gpr152 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:41495920..41495928,-#_ef0848008da7a18a37873e78b0320066 | p@chr9:41495920..41495928, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr10:67371994..67372010,+#_ef0848008da7a18a37873e78b0320066 | p@chr10:67371994..67372010, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:43454162..43454170,-#_ef0848008da7a18a37873e78b0320066 | p@chr1:43454162..43454170, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr15:65641779..65641790,+#_ef0848008da7a18a37873e78b0320066 | p@chr15:65641779..65641790, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:121206667..121206674,-#_ef0848008da7a18a37873e78b0320066 | p2@Strc |
| 1.87e-86 | FFCP PHASE1:Mm9::chr17:27252925..27252939,+#_ef0848008da7a18a37873e78b0320066 | p@chr17:27252925..27252939, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr8:13425469..13425503,+#_ef0848008da7a18a37873e78b0320066 | p@chr8:13425469..13425503, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr10:80806020..80806031,-#_ef0848008da7a18a37873e78b0320066 | p3@Gipc3 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:182528388..182528403,+#_ef0848008da7a18a37873e78b0320066 | p@chr1:182528388..182528403, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr19:10536767..10536777,-#_ef0848008da7a18a37873e78b0320066 | p@chr19:10536767..10536777, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:42207852..42207876,-#_ef0848008da7a18a37873e78b0320066 | p2@Tecta |
| 1.87e-86 | FFCP PHASE1:Mm9::chr4:133802857..133802884,+#_ef0848008da7a18a37873e78b0320066 | p@chr4:133802857..133802884, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr19:10536797..10536802,-#_ef0848008da7a18a37873e78b0320066 | p@chr19:10536797..10536802, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr17:13983160..13983167,+#_ef0848008da7a18a37873e78b0320066 | p@chr17:13983160..13983167, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr15:89215333..89215341,+#_ef0848008da7a18a37873e78b0320066 | p@chr15:89215333..89215341, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr10:107349430..107349440,-#_ef0848008da7a18a37873e78b0320066 | p3@Otogl |
| 1.87e-86 | FFCP PHASE1:Mm9::chr3:100724698..100724706,+#_ef0848008da7a18a37873e78b0320066 | p@chr3:100724698..100724706, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr3:31585340..31585360,+#_ef0848008da7a18a37873e78b0320066 | p@chr3:31585340..31585360, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr12:109905468..109905474,+#_ef0848008da7a18a37873e78b0320066 | p@chr12:109905468..109905474, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr1:172843796..172843799,-#_ef0848008da7a18a37873e78b0320066 | p@chr1:172843796..172843799, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr5:30710455..30710464,-#_ef0848008da7a18a37873e78b0320066 | p9@Otof |
| 1.87e-86 | FFCP PHASE1:Mm9::chr8:13435173..13435186,+#_ef0848008da7a18a37873e78b0320066 | p6@Fam70b |
| 1.87e-86 | FFCP PHASE1:Mm9::chr13:78322383..78322395,-#_ef0848008da7a18a37873e78b0320066 | p2@uc007rhb.1 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr15:97806034..97806061,+#_ef0848008da7a18a37873e78b0320066 | p@chr15:97806034..97806061, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr14:20649897..20649907,+#_ef0848008da7a18a37873e78b0320066 | p@chr14:20649897..20649907, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr14:63099970..63099980,-#_ef0848008da7a18a37873e78b0320066 | p@chr14:63099970..63099980, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:42206730..42206739,-#_ef0848008da7a18a37873e78b0320066 | p@chr9:42206730..42206739, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr10:107349309..107349318,-#_ef0848008da7a18a37873e78b0320066 | p4@Otogl |
| 1.87e-86 | FFCP PHASE1:Mm9::chr5:68423014..68423037,+#_ef0848008da7a18a37873e78b0320066 | p1@Grxcr1 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr18:66033526..66033539,-#_ef0848008da7a18a37873e78b0320066 | p@chr18:66033526..66033539, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr16:93971357..93971363,-#_ef0848008da7a18a37873e78b0320066 | p@chr16:93971357..93971363, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:42207965..42207978,-#_ef0848008da7a18a37873e78b0320066 | p5@Tecta |
| 1.87e-86 | FFCP PHASE2:Mm9::chr8:125802236..125802251,-#_ef0848008da7a18a37873e78b0320066 | p3@Fanca |
| 1.87e-86 | FFCP PHASE1:Mm9::chr11:8405038..8405048,-#_ef0848008da7a18a37873e78b0320066 | p@chr11:8405038..8405048, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr3:35012425..35012439,+#_ef0848008da7a18a37873e78b0320066 | p@chr3:35012425..35012439, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr15:89215319..89215330,+#_ef0848008da7a18a37873e78b0320066 | p@chr15:89215319..89215330, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr3:35012397..35012405,+#_ef0848008da7a18a37873e78b0320066 | p@chr3:35012397..35012405, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr4:115556972..115556979,+#_ef0848008da7a18a37873e78b0320066 | p3@Kncn |
| 1.87e-86 | FFCP PHASE2:Mm9::chr17:13983102..13983126,+#_ef0848008da7a18a37873e78b0320066 | p@chr17:13983102..13983126, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:172843796..172843799,-#_ef0848008da7a18a37873e78b0320066 | p@chr1:172843796..172843799, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr15:85334335..85334353,+#_ef0848008da7a18a37873e78b0320066 | p@chr15:85334335..85334353, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr6:113251614..113251623,+#_ef0848008da7a18a37873e78b0320066 | p@chr6:113251614..113251623, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:42206784..42206793,-#_ef0848008da7a18a37873e78b0320066 | p@chr9:42206784..42206793, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:67011941..67011951,+#_ef0848008da7a18a37873e78b0320066 | p3@Gm1322 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr13:78257454..78257465,+#_ef0848008da7a18a37873e78b0320066 | p@chr13:78257454..78257465, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr13:48087761..48087775,-#_ef0848008da7a18a37873e78b0320066 | p@chr13:48087761..48087775, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr4:154208086..154208123,+#_ef0848008da7a18a37873e78b0320066 | p@chr4:154208086..154208123, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr17:31335903..31335921,-#_ef0848008da7a18a37873e78b0320066 | p2@Tmprss3 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr3:69811606..69811616,+#_ef0848008da7a18a37873e78b0320066 | p2@Otol1 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr3:154459184..154459195,+#_ef0848008da7a18a37873e78b0320066 | p@chr3:154459184..154459195, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr18:81327205..81327211,+#_ef0848008da7a18a37873e78b0320066 | p@chr18:81327205..81327211, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr11:11599532..11599539,-#_ef0848008da7a18a37873e78b0320066 | p@chr11:11599532..11599539, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr12:77084875..77084885,+#_ef0848008da7a18a37873e78b0320066 | p@chr12:77084875..77084885, + |
Property "Property value" (as page type) with input value "UBPROP:0000001 "Skeletal elements surrounding the membranous labyrinth of the inner ear. Sensory capsules anterolateral to and confluent with occipital arch.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000002 "relationship loss: part_of occipito-petrosal (AAO:0010831)[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000002 "relationship loss: part_of otic and occipital (AAO:0000993)[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
