UBERON:0008895: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{UBERON
|id=UBERON:0008895
|name=splanchnocranium
|namespace=
|def="Subdivision of endoskeleton derived from pharyngeal arches" [ISBN10:0073040584, UBERON:cjm, Wikipedia:...") |
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|subset= | |subset= | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from=UBERON:0002539 | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
Latest revision as of 13:44, 27 June 2012
| Name: | splanchnocranium | ||
|---|---|---|---|
| Definition: | "Subdivision of endoskeleton derived from pharyngeal arches" [ISBN10:0073040584, UBERON:cjm, Wikipedia:Facial_skeleton] | ||
| Xrefs: |
| ||
| Synonyms: |
"branchial arch skeleton" RELATED [] "gill arch skeleton" RELATED [] "pharyngeal arch" RELATED INCONSISTENT [VSAO:0000149] "pharyngeal arch skeleton" RELATED [ZFA:0001216] "pharyngeal skeleton" RELATED [ZFA:0001216] "visceral skeleton" RELATED [] "viscerocranium" EXACT INCONSISTENT [VHOG:0000315, Wikipedia:Viscerocranium, ZFA:0001216] | ||
| Comments: | AO notes: VSAO labels this term 'pharyngeal arch' (2012-06-01) - however, it clearly means pharyngeal arch skeleton. Editor/AO notes: many sources define this as the part of the endoskeletal that is from pharyngeal arches - this would make it part-disjoint from dermatocranium. However, there are many bones in AOs that have part-paths to both (e.g. |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0010314(structure with developmental contribution from neural crest),UBERON:0011159(primary subdivision of cranial skeletal system) |
|---|---|
| develops_from: | UBERON:0002539(pharyngeal arch) |
Children
NA
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10813-111B3 (normal embryonic palatal mesenchymal cell line:HEPM)
- 11929-125I3 (Mallassez-derived cells, donor2)
- 11930-125I4 (Mallassez-derived cells, donor3)
- 12142-128E9 (Mallassez-derived cells, donor1 (MZH3))
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0008895 (splanchnocranium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 6.94e-147 | FFCP PHASE2:Hg19::chr22:23586671..23586679,+#_13b7b380f64eec785555e64d7148ef63 | p@chr22:23586671..23586679, + |
| 6.94e-147 | FFCP PHASE1:Hg19::chr22:23586671..23586679,+#_13b7b380f64eec785555e64d7148ef63 | p@chr22:23586671..23586679, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr8:7752197..7752201,+#_b9923d029042fe080dcd77d770785da1 | p1@DEFB4A |
| 1.55e-98 | FFCP PHASE2:Hg19::chr9:22256680..22256685,+#_b9923d029042fe080dcd77d770785da1 | p@chr9:22256680..22256685, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr10:106205565..106205599,+#_b9923d029042fe080dcd77d770785da1 | p@chr10:106205565..106205599, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr10:106205565..106205599,+#_b9923d029042fe080dcd77d770785da1 | p@chr10:106205565..106205599, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr8:7752197..7752201,+#_b9923d029042fe080dcd77d770785da1 | p1@DEFB4A |
| 1.55e-98 | FFCP PHASE1:Hg19::chr9:22256680..22256685,+#_b9923d029042fe080dcd77d770785da1 | p@chr9:22256680..22256685, + |
| 4.23e-89 | FFCP PHASE2:Hg19::chr10:106205503..106205518,+#_8d5d7d7215af23b867507d6f4e4a9809 | p@chr10:106205503..106205518, + |
| 4.23e-89 | FFCP PHASE1:Hg19::chr10:106205503..106205518,+#_8d5d7d7215af23b867507d6f4e4a9809 | p@chr10:106205503..106205518, + |
| 5.72e-89 | FFCP PHASE1:Hg19::chr17:18343257..18343267,+#_a51e068cb93cc7be5eaf965908ec0186 | p2@KRT16P1 |
| 5.72e-89 | FFCP PHASE2:Hg19::chr17:18343257..18343267,+#_a51e068cb93cc7be5eaf965908ec0186 | p2@KRT16P1 |
| 7.73e-89 | FFCP PHASE2:Hg19::chr16:80068152..80068165,-#_920072e5796d43ac1f9c7b46e77f27de | p@chr16:80068152..80068165, - |
| 7.73e-89 | FFCP PHASE1:Hg19::chr16:80068152..80068165,-#_920072e5796d43ac1f9c7b46e77f27de | p@chr16:80068152..80068165, - |
| 2.01e-74 | FFCP PHASE1:Hg19::chr11:102140952..102140956,+#_a309804942a12086a5cc18a2fadf3da4 | p@chr11:102140952..102140956, + |
| 2.01e-74 | FFCP PHASE2:Hg19::chr11:102140952..102140956,+#_a309804942a12086a5cc18a2fadf3da4 | p@chr11:102140952..102140956, + |
| 1.16e-73 | FFCP PHASE2:Hg19::chr4:143470541..143470551,+#_aca810eb3619affea68a1d058e19ab6b | p@chr4:143470541..143470551, + |
| 1.16e-73 | FFCP PHASE1:Hg19::chr4:143470541..143470551,+#_aca810eb3619affea68a1d058e19ab6b | p@chr4:143470541..143470551, + |
| 3.35e-66 | FFCP PHASE1:Hg19::chr16:57954541..57954548,-#_5099e136c305cf9d2f37994553ecfc6d | p@chr16:57954541..57954548, - |
| 3.35e-66 | FFCP PHASE2:Hg19::chr16:57954541..57954548,-#_5099e136c305cf9d2f37994553ecfc6d | p@chr16:57954541..57954548, - |
| 2.61e-64 | FFCP PHASE1:Hg19::chr7:137570496..137570504,-#_f82b8b40f01643d44af6b7dca3108da0 | p@chr7:137570496..137570504, - |
| 2.61e-64 | FFCP PHASE2:Hg19::chr7:137570496..137570504,-#_f82b8b40f01643d44af6b7dca3108da0 | p@chr7:137570496..137570504, - |
| 3.24e-64 | FFCP PHASE1:Hg19::chr1:7447129..7447134,+#_1a6d0c423f2a1f8bb8945302e97a246f | p@chr1:7447129..7447134, + |
| 3.24e-64 | FFCP PHASE2:Hg19::chr1:7447129..7447134,+#_1a6d0c423f2a1f8bb8945302e97a246f | p@chr1:7447129..7447134, + |
| 6.18e-64 | FFCP PHASE2:Hg19::chr21:44168074..44168079,+#_ab1274abd77d6f2f33973a678343d46f | p@chr21:44168074..44168079, + |
| 6.18e-64 | FFCP PHASE1:Hg19::chr3:47155553..47155568,-#_ab1274abd77d6f2f33973a678343d46f | p@chr3:47155553..47155568, - |
| 6.18e-64 | FFCP PHASE2:Hg19::chr3:47155553..47155568,-#_ab1274abd77d6f2f33973a678343d46f | p@chr3:47155553..47155568, - |
| 6.18e-64 | FFCP PHASE1:Hg19::chr21:44168074..44168079,+#_ab1274abd77d6f2f33973a678343d46f | p@chr21:44168074..44168079, + |
| 2.15e-56 | FFCP PHASE1:Hg19::chr10:106205489..106205498,+#_be8a9624a7c6055e3833245253dfaaec | p@chr10:106205489..106205498, + |
| 2.15e-56 | FFCP PHASE2:Hg19::chr10:106205489..106205498,+#_be8a9624a7c6055e3833245253dfaaec | p@chr10:106205489..106205498, + |
| 5.53e-56 | FFCP PHASE1:Hg19::chr18:20493912..20493923,+#_c27a3ca47179b2bb7100ddf2e7e25ca5 | p@chr18:20493912..20493923, + |
| 5.53e-56 | FFCP PHASE2:Hg19::chr18:20493912..20493923,+#_c27a3ca47179b2bb7100ddf2e7e25ca5 | p@chr18:20493912..20493923, + |
| 6.68e-56 | FFCP PHASE2:Hg19::chr18:9649081..9649088,+#_20178cd9257de6fe293784f7acd69324 | p@chr18:9649081..9649088, + |
| 6.68e-56 | FFCP PHASE1:Hg19::chr18:9649081..9649088,+#_20178cd9257de6fe293784f7acd69324 | p@chr18:9649081..9649088, + |
| 2.23e-50 | FFCP PHASE2:Hg19::chr1:116072140..116072172,+#_d4a9bf487c6bb514afe55c05f56da3c9 | p@chr1:116072140..116072172, + |
| 2.23e-50 | FFCP PHASE1:Hg19::chr1:116072140..116072172,+#_d4a9bf487c6bb514afe55c05f56da3c9 | p@chr1:116072140..116072172, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr21:27558561..27558565,-#_ba0554d0cc2afdfaef8fb9d7b2f91843 | p@chr21:27558561..27558565, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr17:54893192..54893195,-#_ba0554d0cc2afdfaef8fb9d7b2f91843 | p14@C17orf67 |
| 3.1e-50 | FFCP PHASE2:Hg19::chr17:54893192..54893195,-#_ba0554d0cc2afdfaef8fb9d7b2f91843 | p14@C17orf67 |
| 3.1e-50 | FFCP PHASE1:Hg19::chr4:155387574..155387588,-#_ba0554d0cc2afdfaef8fb9d7b2f91843 | p@chr4:155387574..155387588, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr21:27558561..27558565,-#_ba0554d0cc2afdfaef8fb9d7b2f91843 | p@chr21:27558561..27558565, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr4:155387574..155387588,-#_ba0554d0cc2afdfaef8fb9d7b2f91843 | p@chr4:155387574..155387588, - |
| 3.11e-50 | FFCP PHASE1:Hg19::chr9:16094653..16094654,+#_4e3252d137b0569d3cf9673ba12846c1 | p@chr9:16094653..16094654, + |
| 3.11e-50 | FFCP PHASE2:Hg19::chr9:16094653..16094654,+#_4e3252d137b0569d3cf9673ba12846c1 | p@chr9:16094653..16094654, + |
| 4.37e-50 | FFCP PHASE2:Hg19::chr14:81221483..81221489,+#_73ce13d060e5da8cb3f40a3944cd01d2 | p@chr14:81221483..81221489, + |
| 4.37e-50 | FFCP PHASE1:Hg19::chr14:81221483..81221489,+#_73ce13d060e5da8cb3f40a3944cd01d2 | p@chr14:81221483..81221489, + |
| 5.14e-50 | FFCP PHASE1:Hg19::chr9:27524670..27524673,+#_49f691d7897b24a2b129dd65a454ada4 | p5@IFNK |
| 5.14e-50 | FFCP PHASE2:Hg19::chr9:27524670..27524673,+#_49f691d7897b24a2b129dd65a454ada4 | p5@IFNK |
| 6.11e-50 | FFCP PHASE1:Hg19::chr8:141728760..141728771,-#_90e4611f2b07d95b4e14329b3ab07d10 | p36@PTK2 |
| 6.11e-50 | FFCP PHASE2:Hg19::chr8:141728760..141728771,-#_90e4611f2b07d95b4e14329b3ab07d10 | p36@PTK2 |
| 3.1e-45 | FFCP PHASE1:Hg19::chr18:20493879..20493891,+#_213a44315373dd12f2625c8962462c12 | p@chr18:20493879..20493891, + |
| 3.1e-45 | FFCP PHASE2:Hg19::chr18:20493879..20493891,+#_213a44315373dd12f2625c8962462c12 | p@chr18:20493879..20493891, + |
| 3.1e-45 | FFCP PHASE1:Hg19::chr12:98739159..98739191,-#_213a44315373dd12f2625c8962462c12 | p@chr12:98739159..98739191, - |
| 3.1e-45 | FFCP PHASE2:Hg19::chr12:98739159..98739191,-#_213a44315373dd12f2625c8962462c12 | p@chr12:98739159..98739191, - |
| 4.19e-45 | FFCP PHASE2:Hg19::chr8:124850358..124850380,+#_24b0cc9e306b716ffceb7559077053ed | p@chr8:124850358..124850380, + |
| 4.19e-45 | FFCP PHASE1:Hg19::chr8:124850358..124850380,+#_24b0cc9e306b716ffceb7559077053ed | p@chr8:124850358..124850380, + |
| 9.63e-42 | FFCP PHASE1:Hg19::chr5:167247865..167247872,+#_0885acbc4f32acff0b0fa6663c3c469f | p23@ODZ2 |
| 9.63e-42 | FFCP PHASE2:Hg19::chr5:167247865..167247872,+#_0885acbc4f32acff0b0fa6663c3c469f | p23@ODZ2 |
| 1.27e-41 | FFCP PHASE1:Hg19::chr13:30259768..30259777,+#_f3348a45694ccfb93b3f76e043837d87 | p@chr13:30259768..30259777, + |
| 1.27e-41 | FFCP PHASE2:Hg19::chr13:30259768..30259777,+#_f3348a45694ccfb93b3f76e043837d87 | p@chr13:30259768..30259777, + |
| 2.2e-41 | FFCP PHASE1:Hg19::chr16:57954525..57954533,-#_0fc6ab8949b47a521418c845f8fefc71 | p@chr16:57954525..57954533, - |
| 2.2e-41 | FFCP PHASE2:Hg19::chr16:57954525..57954533,-#_0fc6ab8949b47a521418c845f8fefc71 | p@chr16:57954525..57954533, - |
| 8.67e-41 | FFCP PHASE2:Hg19::chr1:153113940..153113972,-#_3afb47cc4245a82b75334aa681976ab8 | p1@SPRR2C, p2@SPRR2D, p3@SPRR2A |
| 8.67e-41 | FFCP PHASE1:Hg19::chr1:153113940..153113972,-#_3afb47cc4245a82b75334aa681976ab8 | p1@SPRR2C, p2@SPRR2D, p3@SPRR2A |
| 1.31e-40 | FFCP PHASE1:Hg19::chr5:167247103..167247112,+#_2cd00692171d4badc3ac678763c9d833 | p@chr5:167247103..167247112, + |
| 1.31e-40 | FFCP PHASE2:Hg19::chr5:167247103..167247112,+#_2cd00692171d4badc3ac678763c9d833 | p@chr5:167247103..167247112, + |
| 1.48e-40 | FFCP PHASE1:Hg19::chr12:28299014..28299023,+#_c42e0ecd11b7ba535f49e58b86372203 | p20@CCDC91 |
| 1.48e-40 | FFCP PHASE2:Hg19::chr12:28299014..28299023,+#_c42e0ecd11b7ba535f49e58b86372203 | p20@CCDC91 |
| 4.94e-40 | FFCP PHASE1:Hg19::chr8:144414013..144414023,-#_1fd8dd966b9247a2ec27986a420ff183 | p8@TOP1MT |
| 4.94e-40 | FFCP PHASE2:Hg19::chr8:144414013..144414023,-#_1fd8dd966b9247a2ec27986a420ff183 | p8@TOP1MT |
| 4.61e-38 | FFCP PHASE1:Hg19::chr12:28116496..28116507,-#_266f6853e085ccfdd4f27c2da40dbec0 | p@chr12:28116496..28116507, - |
| 4.61e-38 | FFCP PHASE2:Hg19::chr12:28116496..28116507,-#_266f6853e085ccfdd4f27c2da40dbec0 | p@chr12:28116496..28116507, - |
| 2.1e-35 | FFCP PHASE1:Hg19::chr7:137570475..137570486,-#_2813a0a85c9f9d391812b99226f040e7 | p@chr7:137570475..137570486, - |
| 2.1e-35 | FFCP PHASE2:Hg19::chr7:137570475..137570486,-#_2813a0a85c9f9d391812b99226f040e7 | p@chr7:137570475..137570486, - |
| 3.35e-35 | FFCP PHASE1:Hg19::chr10:47746929..47746964,+#_f0c7a89e8222cda61e9d1ce895bb1c70 | p1@ANXA8L2 |
| 3.35e-35 | FFCP PHASE2:Hg19::chr10:47746929..47746964,+#_f0c7a89e8222cda61e9d1ce895bb1c70 | p1@ANXA8L2 |
| 5.06e-34 | FFCP PHASE1:Hg19::chr9:27524417..27524425,+#_14425b7a75644c08f7d027c86a2f84e0 | p4@IFNK |
| 5.06e-34 | FFCP PHASE2:Hg19::chr9:27524417..27524425,+#_14425b7a75644c08f7d027c86a2f84e0 | p4@IFNK |
| 9.88e-34 | FFCP PHASE1:Hg19::chr4:71388662..71388695,+#_b769169de70e4223aad265b0f7fc11fa | p@chr4:71388662..71388695, + |
| 9.88e-34 | FFCP PHASE2:Hg19::chr4:71388662..71388695,+#_b769169de70e4223aad265b0f7fc11fa | p@chr4:71388662..71388695, + |
| 9.88e-34 | FFCP PHASE1:Hg19::chr17:18343216..18343225,+#_b769169de70e4223aad265b0f7fc11fa | p1@KRT16P1 |
| 9.88e-34 | FFCP PHASE2:Hg19::chr17:18343216..18343225,+#_b769169de70e4223aad265b0f7fc11fa | p1@KRT16P1 |
| 4.98e-33 | FFCP PHASE1:Hg19::chr18:9617195..9617198,-#_7b427bac71fd33077ba22bad0df70f89 | p@chr18:9617195..9617198, - |
| 4.98e-33 | FFCP PHASE2:Hg19::chr18:9617195..9617198,-#_7b427bac71fd33077ba22bad0df70f89 | p@chr18:9617195..9617198, - |
| 7.69e-33 | FFCP PHASE1:Hg19::chr11:13073062..13073067,+#_e6220fc3095ff031d97d214c7b5a93e3 | p@chr11:13073062..13073067, + |
| 7.69e-33 | FFCP PHASE2:Hg19::chr11:13073062..13073067,+#_e6220fc3095ff031d97d214c7b5a93e3 | p@chr11:13073062..13073067, + |
| 9.55e-33 | FFCP PHASE1:Hg19::chr12:47182487..47182490,-#_9e9e5aa1a42b038ac5eeb130f55f36a7 | p@chr12:47182487..47182490, - |
| 9.55e-33 | FFCP PHASE1:Hg19::chr11:93754316..93754353,+#_9e9e5aa1a42b038ac5eeb130f55f36a7 | p2@HEPHL1 |
| 9.55e-33 | FFCP PHASE2:Hg19::chr11:93754316..93754353,+#_9e9e5aa1a42b038ac5eeb130f55f36a7 | p2@HEPHL1 |
| 9.55e-33 | FFCP PHASE2:Hg19::chr12:47182487..47182490,-#_9e9e5aa1a42b038ac5eeb130f55f36a7 | p@chr12:47182487..47182490, - |
| 1.18e-32 | FFCP PHASE1:Hg19::chr1:242927602..242927613,-#_fd3e35835034be52d7d15855ecd1cde2 | p@chr1:242927602..242927613, - |
| 1.18e-32 | FFCP PHASE1:Hg19::chr6:29643393..29643442,-#_fd3e35835034be52d7d15855ecd1cde2 | p@chr6:29643393..29643442, - |
| 1.18e-32 | FFCP PHASE2:Hg19::chr1:242927602..242927613,-#_fd3e35835034be52d7d15855ecd1cde2 | p@chr1:242927602..242927613, - |
| 1.18e-32 | FFCP PHASE2:Hg19::chr6:29643393..29643442,-#_fd3e35835034be52d7d15855ecd1cde2 | p@chr6:29643393..29643442, - |
| 1.47e-32 | FFCP PHASE2:Hg19::chr15:42566543..42566553,+#_4642abaa412a5648c44837051fb537f7 | p11@GANC |
| 1.47e-32 | FFCP PHASE1:Hg19::chr15:42566543..42566553,+#_4642abaa412a5648c44837051fb537f7 | p11@GANC |
| 2.03e-32 | FFCP PHASE1:Hg19::chr8:105212349..105212367,+#_58d3c60beee2dad5f09addeddda1019b | p@chr8:105212349..105212367, + |
| 2.03e-32 | FFCP PHASE2:Hg19::chr8:105212349..105212367,+#_58d3c60beee2dad5f09addeddda1019b | p@chr8:105212349..105212367, + |
| 2.12e-30 | FFCP PHASE1:Hg19::chr3:149510368..149510386,-#_583c75f9e476c6548faa74eebf8abfca | p5@ANKUB1 |
| 2.12e-30 | FFCP PHASE2:Hg19::chr3:149510368..149510386,-#_583c75f9e476c6548faa74eebf8abfca | p5@ANKUB1 |
Property "Property value" (as page type) with input value "UBPROP:0000001 "Anatomical cluster that is part of the cranium and consists of the jaws, hyoid and branchial arches.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "Anatomical cluster that is part of the cranium and consists of the jaws, hyoid, and branchial arches.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
