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MacroAPE 1083:14-TSTCRGCTR: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;243.892;42.504;179.124;546.48!2;122.452;339.02;411.884;139.656!3;181.148;46.552;1.012;783.288!4;24.288;531.3;359.26;97.152!5;474.628;1.012;5...")
 
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8-123H3;0.917812!11835-124G8;0.855166!11762-123H7;0.667997!11838-124H2;0.378782!11757-123H2;0.999158!11759-123H4;0.676363!11761-123H6;0.423928!11842-124H6;0.97147!11837-124H1;0.151873!10568-108B1;0.694845!13230-141I8;0.229553!13231-141I9;0.917625!10696-109G3;0.942011!10493-107B7;0.320525!10494-107B8;0.0217347!10850-111F4;0.00187811!10851-111F5;0.0449088!10852-111F6;0.00868956!10853-111F7;0.0288251!10854-111F8;0.0708934!10855-111F9;0.0756832!10856-111G1;0.00554753!10847-111F1;0.0724683!10846-111E9;0.041789!10848-111F2;0.0470726!10845-111E8;0.181537!10857-111G2;0.414891!10858-111G3;0.0925392!10156-103A3;0.241968!11901-125F2;0.0319072!11902-125F3;0.34512!11903-125F4;0.222988!10689-109F5;0.212068!10648-109A9;0.124103!10784-110H1;0.251049!10744-110C6;0.0400129!10772-110F7;0.292451!10474-106I6;0.0331121!10600-108E6;0.0275973!10684-109E9;0.0415916!12226-129F3;0.274476!12227-129F4;0.186579!10508-107D4;0.355106!10539-107G8;0.322431!10607-108F4;0.327034!10555-107I6;0.0559704!10774-110F9;0.422668!10637-108I7;0.106162!10663-109C6;0.261297!10728-110A8;0.895846!10729-110A9;0.11242!10430-106D7;0.557079!10730-110B1;0.259799!10813-111B3;0.0907588!10812-111B2;0.491806!10037-101F1;0.27209!10172-103C1;0.045681!10163-103B1;0.0967454!10076-102A4;0.0177114!10073-102A1;0.0794413!10036-101E9;0.288337!10195-103E6;0.0798985!10277-104E7;0.0417115!10434-106E2;0.000476205!10550-107I1;0.0272528!10545-107H5;0.00174001!10544-107H4;0.0690767!10704-109H2;0.154202!10510-107D6;0.679432!10558-107I9;0.0411605!10020-101D2;0.2439!10732-110B3;0.0118921!10049-101G4;0.0263561!10698-109G5;0.878494!10437-106E5;0.321!10417-106C3;0.0830513!10035-101E8;0.000500533!10171-103B9;0.0647707!10157-103A4;0.0751639!10034-101E7;0.0349744!10072-101I9;0.051918!10199-103F1;0.416332!10200-103F2;0.0223606!10697-109G4;4.26072e-05!10723-110A3;0.199128!10179-103C8;0.0154978!10160-103A7;0.168694!10180-103C9;0.0921158!10162-103A9;0.179536!10021-101D3;0.116308!10840-111E3;0.00131787!10706-109H4;0.304615!10033-101E6;0.291668!10032-101E5;0.0677346!10490-107B4;0.0775833!10439-106E7;0.00592254!10022-101D4;0.00786873!10176-103C5;0.00629161!10469-106I1;0.161956!10067-101I4;0.0234907!10411-106B6;0.152061!10471-106I3;0.36982!10030-101E3;0.141438!10475-106I7;0.0202046!10787-110H4;0.0274268!10477-106I9;0.0182466!10695-109G2;0.587227!11771-123I7;0.124186!11772-123I8;0.995641!11773-123I9;0.944701!10093-102C3;0.172921!10442-106F1;0.0368277!10442-106F1;0.256438!10201-103F3;0.422746!10639-108I9;0.0193822!11843-124H7;0.639346!11841-124H5;0.147378!10693-109F9;0.00859988!10436-106E4;0.0929313!10483-107A6;0.0148395!10282-104F3;0.0559143!10023-101D5;0.0019407!10066-101I3;0.000107846!10065-101I2;0.000145703!10800-110I8;0.000194195!10610-108F7;0.0430244!10841-111E4;0.32335!10541-107H1;0.143402!10842-111E5;0.0893127!10562-108A4;0.154586!10024-101D6;0.264626!10064-101I1;0.10382!10609-108F6;0.399012!10048-101G3;0.448007!10781-110G7;0.00594417!10181-103D1;0.029083!10159-103A6;0.0167735!10056-101H2;0.00373586!10737-110B8;0.0147252!10025-101D7;0.901314!10044-101F8;0.0111846!10424-106D1;0.00461874!10463-106H4;0.122317!10616-108G4;0.00475056!10486-107A9;0.0898564!10062-101H8;0.00135069!10202-103F4;0.019884!10158-103A5;0.00791148!10441-106E9;0.000393855!10031-101E4;0.0898604!10063-101H9;0.0564532!10063-101H9;0.262851!11763-123H8;0.157196!11765-123I1;0.776178!11768-123I4;0.574459!10807-111A6;0.885057!10790-110H7;0.0711694!10798-110I6;0.106099!10786-110H3;0.45405!10591-108D6;0.0632233!10593-108D8;0.125042!10590-108D5;0.14074!10026-101D8;0.0422325!10096-102C6;0.0648169!10168-103B6;0.875965!10154-103A1;0.0258196!10209-103G2;0.00294015!10061-101H7;5.27024e-05!10027-101D9;7.51167e-07!10043-101F7;0.717165!10783-110G9;0.109939!10028-101E1;0.100929!10060-101H6;0.000174454!10203-103F5;1.43346e-07!10059-101H5;0.000156427!10047-101G2;3.60834e-05!10029-101E2;0.00243947!10058-101H4;0.0047389!10418-106C4;5.89495e-05!10492-107B6;0.125539!10694-109G1;0.0546375!10797-110I5;0.683417!10057-101H3;9.00783e-05!10100-102D1;0.00578409!10055-101H1;0.0060662!10204-103F6;0.0203102!10191-103E2;0.00149717!10563-108A5;0.000613644
|name=14-TSTCRGCTR,CNhs13489,BestGuess:MAFB_f1_HM09(0.674358944842871),T:1012.0(20.67%),B:6452.1(14.63%),P:1e-29
|name=14-TSTCRGCTR,CNhs13489,BestGuess:MAFB_f1_HM09(0.674358944842871),T:1012.0(20.67%),B:6452.1(14.63%),P:1e-29
|tomtom_result=Mafb#MA0117.1;1;0.00548845;2.6125;1;7;TGTCGGCTA;GCGTCAGC;-!HAP4#MA0315.1;0;0.00755393;3.59567;1;9;TGTCGGCTA;TCGCCTCTGATTGGT;-!Tcfcp2l1#MA0145.1;4;0.0156444;7.44675;1;9;TGTCGGCTA;CTGGTTTGAACTGG;-
}}
}}

Latest revision as of 11:59, 7 September 2012

Full Name: 14-TSTCRGCTR,CNhs13489,BestGuess:MAFB_f1_HM09(0.674358944842871),T:1012.0(20.67%),B:6452.1(14.63%),P:1e-29

Motif matrix
POACGT
1243.89242.504179.124546.48
2122.452339.02411.884139.656
3181.14846.5521.012783.288
424.288531.3359.2697.152
5474.6281.012535.3481.012
677.924139.656556.6237.82
71.012735.72474.888200.376
8196.32860.72153.824601.128
9518.1441.012491.8321.012

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
Mafb#MA0117.110.005488452.612517TGTCGGCTAGCGTCAGC-
HAP4#MA0315.100.007553933.5956719TGTCGGCTATCGCCTCTGATTGGT-
Tcfcp2l1#MA0145.140.01564447.4467519TGTCGGCTACTGGTTTGAACTGG-
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