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MacroAPE 1083:4-CTCTCTCTC: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;1.446;1140.894;214.008;89.652!2;240.036;375.96;135.924;695.526!3;8.676;1434.432;1.446;1.446!4;1.446;351.378;43.38;1049.796!5;1.446;1441.662;...")
 
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5;0.518657!10534-107G3;0.652365!10429-106D6;0.827092!10464-106H5;0.819595!10827-111C8;0.821153!10789-110H6;0.784929!10828-111C9;0.103319!10788-110H5;0.134168!10792-110H9;0.521925!10765-110E9;0.440121!10829-111D1;0.466272!10830-111D2;0.848337!10831-111D3;0.692191!10832-111D4;0.297297!10833-111D5;0.943695!10764-110E8;0.754531!10770-110F5;0.213352!10399-106A3;0.292337!10400-106A4;0.55176!10405-106A9;0.527284!10834-111D6;0.46054!10835-111D7;0.469214!10836-111D8;0.715149!10837-111D9;0.537782!10699-109G6;0.274944!10802-111A1;0.864871!10796-110I4;0.684179!10010-101C1;0.895621!10810-111A9;0.865071!10421-106C7;0.924933!10708-109H6;0.141406!12235-129G3;0.739681!12236-129G4;0.0816324!12237-129G5;0.818269!10167-103B5;0.190187!10151-102I7;0.00069237!10428-106D5;0.00274721!10795-110I3;0.693316!10805-111A4;0.554218!10052-101G7;0.39636!10189-103D9;0.489876!10589-108D4;0.919651!10425-106D2;0.216818!10427-106D4;0.00877389!10702-109G9;0.562237!10432-106D9;0.68781!10496-107C1;0.184177!10718-109I7;0.96032!10011-101C2;0.487026!10053-101G8;0.350322!10686-109F2;0.0262878!10084-102B3;0.277793!10012-101C3;0.00404416!10085-102B4;0.00304285!10482-107A5;0.00310133!10419-106C5;0.872005!10080-102A8;0.489205!10760-110E4;0.945736!10709-109H7;0.750386!10710-109H8;0.871153!10703-109H1;0.613095!10719-109I8;0.0324352!10642-109A3;0.0275183!10177-103C6;0.0119064!10164-103B2;0.000755651!10173-103C2;0.00153638!10166-103B4;0.000574931!10083-102B2;0.000321405!10188-103D8;0.000702663!10552-107I3;0.00187033!10553-107I4;0.273744!10013-101C4;0.674213!10536-107G5;0.441004!10618-108G6;0.0396209!10423-106C9;0.138626!10785-110H2;0.106797!12238-129G6;0.0906688!12239-129G7;0.0729448!12240-129G8;0.0912244!10416-106C2;0.173637!10801-110I9;0.87654!10766-110F1;0.745403!10824-111C5;0.387942!10825-111C6;0.969383!10826-111C7;0.972605!10454-106G4;0.881692!10409-106B4;0.680978!10638-108I8;0.487329!10636-108I6;0.985293!10513-107D9;0.358577!10420-106C6;0.638681!10082-102B1;0.276995!10014-101C5;0.922516!10070-101I7;0.832432!10452-106G2;0.720239!10453-106G3;0.948382!10449-106F8;0.859179!10042-101F6;0.811137!10069-101I6;0.0443091!10193-103E4;0.367211!10631-108I1;0.0062805!10438-106E6;0.903602!10488-107B2;0.744085!10196-103E7;0.496372!10071-101I8;0.257205!10071-101I8;0.4094!10041-101F5;0.00111185!10451-106G1;0.305374!10450-106F9;0.96184!10604-108F1;0.42964!10605-108F2;0.974458!10606-108F3;0.935509!10603-108E9;0.85286!10497-107C2;0.989651!10448-106F7;0.0476656!10643-109A4;0.719846!10426-106D3;0.424977!10431-106D8;0.366434!10197-103E8;0.794741!10443-106F2;0.472907!10815-111B5;0.271264!10816-111B6;0.489135!10817-111B7;0.665742!10015-101C6;0.635446!10410-106B5;0.768265!10054-101G9;0.337582!10758-110E2;0.0183652!10711-109H9;0.238526!10040-101F4;0.777429!10470-106I2;0.00129426!10415-106C1;0.510109!10198-103E9;0.54318!10614-108G2;0.813996!10612-108F9;0.664464!10549-107H9;0.339573!10615-108G3;0.742145!10487-107B1;0.177738!10433-106E1;0.384052!10688-109F4;0.229926!10444-106F3;0.53637!10444-106F3;0.616642!10485-107A8;0.654767!10413-106B8;0.241697!10175-103C4;0.316998!10161-103A8;0.00505241!12131-128D7;0.0203111!10624-108H3;0.0539467!10712-109I1;0.176324!10205-103F7;0.397934!10206-103F8;0.29381!10207-103F9;0.312328!10050-101G5;0.361779!10051-101G6;0.683252!10016-101C7;0.705118!10046-101G1;0.651896!10778-110G4;0.350542!10633-108I3;0.963288!10818-111B8;0.715895!10819-111B9;0.65405!10820-111C1;0.607765!10484-107A7;0.660222!10808-111A7;0.263473!10169-103B7;0.953259!10153-102I9;0.00166922!13425-144D5;0.00535956!13433-144E4;0.980985!13437-144E8;0.629984!11904-125F5;0.484194!11905-125F6;0.115738!10039-101F3;0.0651943!10791-110H8;0.00136757!10017-101C8;0.943286!10045-101F9;0.823961!10509-107D5;0.502979!10839-111E2;0.928277!10692-109F8;0.047979!10079-102A7;0.828893!10078-102A6;0.675961!10721-110A1;0.84351!10569-108B2;0.764952!10570-108B3;0.933985!10571-108B4;0.851403!10647-109A8;0.794107!10752-110D5;0.148931!10782-110G8;0.373236!10726-110A6;0.277428!10018-101C9;0.592108!10086-102B5;0.386293!10182-103D2;0.382523!10165-103B3;0.00992595!10499-107C4;0.00643797!10408-106B3;0.323143!10019-101D1;0.165689!10068-101I5;0.59366!10075-102A3;0.455231!10077-102A5;0.904901!10727-110A7;0.102806!10775-110G1;0.314859!10412-106B7;0.470715!12231-129F8;0.244172!12232-129F9;0.51929!12233-129G1;0.516555!12234-129G2;0.501983!10414-106B9;0.451054!10170-103B8;0.737138!10183-103D3;0.000542301!10150-102I6;0.000722581!10174-103C3;0.00154242!10155-103A2;0.00778018!10038-101F2;0.0166492!10838-111E1;0.0160076!10759-110E3;0.0843302!10514-107E1;0.221504!10465-106H6;0.62516!10691-109F7;0.487448!10843-111E6;0.459783!10844-111E7;0.102736!11747-123G1;0.0329923!11748-123G2;0.985214!11749-123G3;0.860391!11750-123G4;0.532512!11751-123G5;0.237883!11840-124H4;0.191374!11752-123G6;0.781508!11753-123G7;0.63182!11754-123G8;0.389798!11755-123G9;0.812876!11756-123H1;0.490067!11833-124G6;0.644503!11760-123H5;0.17572!11836-124G9;0.710846!11758-123H3;0.754887!11835-124G8;0.774115!11762-123H7;0.422465!11838-124H2;0.843767!11757-123H2;0.746398!11759-123H4;0.223906!11761-123H6;0.706969!11842-124H6;0.917262!11837-124H1;0.643529!10568-108B1;0.820151!13230-141I8;0.457019!13231-141I9;0.708263!10696-109G3;0.511367!10493-107B7;0.242324!10494-107B8;0.630213!10850-111F4;0.783644!10851-111F5;0.264582!10852-111F6;0.136536!10853-111F7;0.0347535!10854-111F8;0.309053!10855-111F9;0.15153!10856-111G1;0.551023!10847-111F1;0.0594246!10846-111E9;0.815193!10848-111F2;0.763518!10845-111E8;0.253146!10857-111G2;0.618475!10858-111G3;0.137002!10156-103A3;0.791724!11901-125F2;0.0016442!11902-125F3;0.105789!11903-125F4;0.0408595!10689-109F5;0.0930369!10648-109A9;0.212477!10784-110H1;0.286539!10744-110C6;0.252355!10772-110F7;0.322701!10474-106I6;0.509952!10600-108E6;0.531515!10684-109E9;0.133677!12226-129F3;0.728986!12227-129F4;0.473046!10508-107D4;0.584161!10539-107G8;0.00382887!10607-108F4;0.00123561!10555-107I6;0.123634!10774-110F9;0.00208224!10637-108I7;0.353393!10663-109C6;0.0189461!10728-110A8;0.131112!10729-110A9;0.174331!10430-106D7;0.448867!10730-110B1;0.541412!10813-111B3;0.0343926!10812-111B2;0.0506226!10037-101F1;0.698138!10172-103C1;0.00234099!10163-103B1;0.000458282!10076-102A4;0.00338129!10073-102A1;0.00241024!10036-101E9;0.00156782!10195-103E6;0.0034322!10277-104E7;0.00114181!10434-106E2;0.102217!10550-107I1;0.699202!10545-107H5;0.88336!10544-107H4;0.967473!10704-109H2;0.525655!10510-107D6;0.226009!10558-107I9;0.799312!10020-101D2;0.176967!10732-110B3;0.0660843!10049-101G4;0.517225!10698-109G5;0.547702!10437-106E5;0.14237!10417-106C3;0.151788!10035-101E8;0.00274491!10171-103B9;0.00200665!10157-103A4;0.000860978!10034-101E7;0.00119301!10072-101I9;0.00197425!10199-103F1;0.00180205!10200-103F2;0.720368!10697-109G4;0.419094!10723-110A3;0.200617!10179-103C8;0.233303!10160-103A7;1.62025e-05!10180-103C9;4.13842e-06!10162-103A9;1.12038e-05!10021-101D3;5.13578e-05!10840-111E3;0.25693!10706-109H4;0.866632!10033-101E6;0.786189!10032-101E5;0.00680611!10490-107B4;0.00205053!10439-106E7;0.810778!10022-101D4;0.301723!10176-103C5;0.217436!10469-106I1;0.00226433!10067-101I4;0.390519!10411-106B6;0.0572623!10471-106I3;0.95029!10030-101E3;0.744899!10475-106I7;0.0292494!10787-110H4;0.116192!10477-106I9;0.239684!10695-109G2;0.258837!11771-123I7;0.474624!11772-123I8;0.980831!11773-123I9;0.73386!10093-102C3;0.681318!10442-106F1;0.95615!10442-106F1;0.867127!10201-103F3;0.912349!10639-108I9;0.114996!11843-124H7;0.997794!11841-124H5;0.0896009!10693-109F9;0.0106311!10436-106E4;0.454332!10483-107A6;0.774963!10282-104F3;0.0436164!10023-101D5;0.23811!10066-101I3;0.702018!10065-101I2;0.320165!10800-110I8;0.508006!10610-108F7;0.840015!10841-111E4;0.114203!10541-107H1;0.180285!10842-111E5;0.587583!10562-108A4;0.0777305!10024-101D6;0.27067!10064-101I1;0.734329!10609-108F6;0.61832!10048-101G3;0.764806!10781-110G7;0.16713!10181-103D1;0.220759!10159-103A6;0.00891087!10056-101H2;0.0148992!10737-110B8;0.014149!10025-101D7;0.927988!10044-101F8;0.140232!10424-106D1;0.193749!10463-106H4;0.619712!10616-108G4;0.931785!10486-107A9;0.939578!10062-101H8;0.714773!10202-103F4;0.700139!10158-103A5;0.869053!10441-106E9;0.0754089!10031-101E4;0.272558!10063-101H9;0.00384833!10063-101H9;0.00219324!11763-123H8;0.295715!11765-123I1;0.621127!11768-123I4;0.565768!10807-111A6;0.604745!10790-110H7;0.463225!10798-110I6;0.204275!10786-110H3;0.576517!10591-108D6;0.630178!10593-108D8;0.561793!10590-108D5;0.600292!10026-101D8;0.80351!10096-102C6;0.122614!10168-103B6;0.0271356!10154-103A1;0.00723396!10209-103G2;0.010562!10061-101H7;0.91979!10027-101D9;0.220286!10043-101F7;0.229244!10783-110G9;0.0791913!10028-101E1;0.233235!10060-101H6;0.74408!10203-103F5;0.362783!10059-101H5;0.80673!10047-101G2;0.645148!10029-101E2;0.441854!10058-101H4;0.860312!10418-106C4;0.270114!10492-107B6;0.790189!10694-109G1;0.574252!10797-110I5;0.157836!10057-101H3;0.272025!10100-102D1;0.350258!10055-101H1;0.247983!10204-103F6;0.206972!10191-103E2;0.784395!10563-108A5;0.977536
|name=4-CTCTCTCTC,CNhs12610,BestGuess:GTF2I.p2.SwissRegulon.nucfreq(0.695676810727001),T:1446.0(39.30%),B:12640.2(28.34%),P:1e-45
|name=4-CTCTCTCTC,CNhs12610,BestGuess:GTF2I.p2.SwissRegulon.nucfreq(0.695676810727001),T:1446.0(39.30%),B:12640.2(28.34%),P:1e-45
|tomtom_result=Trl#MA0205.1;1;3.05551e-05;0.0145442;0.0290885;9;CTCTCTCTC;TTGCTCTCTC;+!SP1#MA0079.2;1;0.00471183;2.24283;1;9;CTCTCTCTC;CCCCGCCCCC;+!Pax4#MA0068.1;20;0.014707;7.00055;1;9;CTCTCTCTC;GAAAAATTTCCCATACTCCACTCCCCCCCC;+!id1#MA0120.1;2;0.0167145;7.95608;1;9;CTCTCTCTC;TTTTCCTTTTCG;+!Klf4#MA0039.1;0;0.0172652;8.21823;1;9;CTCTCTCTC;CCTTCCTTTA;-
}}
}}

Latest revision as of 12:15, 7 September 2012

Full Name: 4-CTCTCTCTC,CNhs12610,BestGuess:GTF2I.p2.SwissRegulon.nucfreq(0.695676810727001),T:1446.0(39.30%),B:12640.2(28.34%),P:1e-45

Motif matrix
POACGT
11.4461140.894214.00889.652
2240.036375.96135.924695.526
38.6761434.4321.4461.446
41.446351.37843.381049.796
51.4461441.6621.4461.446
61.446310.891.4461132.218
71.4461263.80426.028154.722
81.446430.908280.524733.122
928.921273.9261.446141.708

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
Trl#MA0205.113.05551e-050.01454420.02908859CTCTCTCTCTTGCTCTCTC+
SP1#MA0079.210.004711832.2428319CTCTCTCTCCCCCGCCCCC+
Pax4#MA0068.1200.0147077.0005519CTCTCTCTCGAAAAATTTCCCATACTCCACTCCCCCCCC+
id1#MA0120.120.01671457.9560819CTCTCTCTCTTTTCCTTTTCG+
Klf4#MA0039.100.01726528.2182319CTCTCTCTCCCTTCCTTTA-
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