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MacroAPE 1083:NEUROD1 Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;1482;462;2358;314!2;591;3790;157;78!3;69;4511;18;18!4;4510;18;42;46!5;46;194;1020;3356!6;162;4394;37;23!7;14;14;18;4570!8;32;9;4570;5!9;23;1...")
 
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G8;0.569803!11755-123G9;0.330334!11756-123H1;0.918722!11833-124G6;0.805179!11760-123H5;0.856242!11836-124G9;0.315868!11758-123H3;0.596971!11835-124G8;0.418135!11762-123H7;0.152141!11838-124H2;0.41756!11757-123H2;0.0819675!11759-123H4;0.593521!11761-123H6;0.806742!11842-124H6;0.606534!11837-124H1;0.309324!10568-108B1;0.240081!13230-141I8;0.681021!13231-141I9;0.903108!10696-109G3;0.836627!10493-107B7;0.895967!10494-107B8;0.00949104!10850-111F4;0.440557!10851-111F5;0.0244075!10852-111F6;0.0136372!10853-111F7;0.0209338!10854-111F8;8.48717e-05!10855-111F9;0.00519619!10856-111G1;0.741449!10847-111F1;0.0608541!10846-111E9;0.000884298!10848-111F2;0.0410295!10845-111E8;0.0181016!10857-111G2;0.0096359!10858-111G3;0.0007804!10156-103A3;0.0146096!11901-125F2;0.0184502!11902-125F3;0.167752!11903-125F4;0.0688554!10689-109F5;0.11113!10648-109A9;5.70803e-05!10784-110H1;0.0762949!10744-110C6;0.0030819!10772-110F7;0.346629!10474-106I6;0.139058!10600-108E6;0.844938!10684-109E9;1.57326e-05!12226-129F3;0.339696!12227-129F4;0.434266!10508-107D4;0.563343!10539-107G8;0.255631!10607-108F4;0.729088!10555-107I6;0.0449885!10774-110F9;0.573449!10637-108I7;0.0479731!10663-109C6;0.208757!10728-110A8;0.00762609!10729-110A9;0.0711612!10430-106D7;0.490984!10730-110B1;0.159896!10813-111B3;0.67865!10812-111B2;0.324193!10037-101F1;0.48593!10172-103C1;0.0061392!10163-103B1;0.0255431!10076-102A4;0.0187012!10073-102A1;0.0175643!10036-101E9;0.096894!10195-103E6;0.00873499!10277-104E7;0.00797776!10434-106E2;0.00033863!10550-107I1;0.000525605!10545-107H5;0.000126042!10544-107H4;0.0877785!10704-109H2;0.00132168!10510-107D6;0.0132646!10558-107I9;0.150966!10020-101D2;0.000889973!10732-110B3;0.0657776!10049-101G4;4.41003e-05!10698-109G5;2.01551e-06!10437-106E5;0.123819!10417-106C3;0.000251757!10035-101E8;0.068343!10171-103B9;0.0110936!10157-103A4;0.047349!10034-101E7;0.0284983!10072-101I9;0.0111931!10199-103F1;0.169375!10200-103F2;0.00724395!10697-109G4;7.95103e-09!10723-110A3;0.138652!10179-103C8;0.0346516!10160-103A7;0.00397802!10180-103C9;0.00145656!10162-103A9;0.00348154!10021-101D3;0.00651352!10840-111E3;0.0027268!10706-109H4;0.628263!10033-101E6;0.0137434!10032-101E5;0.000835328!10490-107B4;0.00616889!10439-106E7;5.37315e-05!10022-101D4;0.0258938!10176-103C5;0.000421684!10469-106I1;0.0296176!10067-101I4;0.046305!10411-106B6;0.010971!10471-106I3;0.395445!10030-101E3;0.0479189!10475-106I7;0.00131534!10787-110H4;0.981588!10477-106I9;0.00042631!10695-109G2;0.710993!11771-123I7;0.839695!11772-123I8;0.218085!11773-123I9;0.756981!10093-102C3;0.673098!10442-106F1;0.00654244!10442-106F1;0.0139362!10201-103F3;0.0177265!10639-108I9;0.148302!11843-124H7;0.0115757!11841-124H5;0.00698071!10693-109F9;0.000757168!10436-106E4;0.038357!10483-107A6;0.0526884!10282-104F3;0.0809293!10023-101D5;1.06785e-08!10066-101I3;3.46545e-15!10065-101I2;1.2077e-08!10800-110I8;1.58154e-05!10610-108F7;0.576405!10841-111E4;0.676758!10541-107H1;0.0093809!10842-111E5;0.18378!10562-108A4;0.345843!10024-101D6;0.830187!10064-101I1;0.002852!10609-108F6;0.000182834!10048-101G3;0.758798!10781-110G7;0.00292112!10181-103D1;0.275931!10159-103A6;0.0016114!10056-101H2;0.00110635!10737-110B8;0.000234916!10025-101D7;0.212699!10044-101F8;0.0116314!10424-106D1;0.000475624!10463-106H4;0.173672!10616-108G4;0.0589618!10486-107A9;0.00222334!10062-101H8;0.00516111!10202-103F4;0.0376035!10158-103A5;0.00298134!10441-106E9;0.000593382!10031-101E4;0.00872305!10063-101H9;0.00618663!10063-101H9;0.117689!11763-123H8;2.23889e-05!11765-123I1;0.619031!11768-123I4;0.262061!10807-111A6;0.653664!10790-110H7;0.00588045!10798-110I6;0.120284!10786-110H3;0.0223181!10591-108D6;0.153342!10593-108D8;0.091233!10590-108D5;0.0986304!10026-101D8;0.104706!10096-102C6;0.00344957!10168-103B6;0.253726!10154-103A1;0.0294964!10209-103G2;0.00742597!10061-101H7;6.2508e-07!10027-101D9;8.83932e-06!10043-101F7;0.349895!10783-110G9;0.00815409!10028-101E1;0.0032039!10060-101H6;0.0120086!10203-103F5;0.0180742!10059-101H5;2.52211e-07!10047-101G2;3.87522e-08!10029-101E2;0.000267603!10058-101H4;0.00157758!10418-106C4;0.000366746!10492-107B6;0.000211178!10694-109G1;6.75732e-06!10797-110I5;0.0893377!10057-101H3;0.0050598!10100-102D1;1.62392e-05!10055-101H1;0.0112586!10204-103F6;0.0289048!10191-103E2;0.18965!10563-108A5;9.18882e-07
|name=NEUROD1_Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer
|name=NEUROD1_Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer
|tomtom_result=TAL1::TCF3#MA0091.1;2;6.24679e-06;0.00297347;0.00593288;10;GCCATCTGTT;CGACCATCTGTT;+!YY1#MA0095.1;0;0.00135859;0.646689;0.499955;6;GCCATCTGTT;GCCATC;+!CTCF#MA0139.1;4;0.00216787;1.03191;0.514733;10;GCCATCTGTT;TAGCGCCCCCTGGTGGCCA;-!sna#MA0086.1;-2;0.00353518;1.68275;0.635725;6;GCCATCTGTT;CACCTG;-!twi#MA0249.1;1;0.0046512;2.21397;0.635725;10;GCCATCTGTT;TCGCATATGTTG;+!Gata1#MA0035.1;-1;0.00468553;2.23031;0.635725;6;GCCATCTGTT;CCATCC;-!Myf#MA0055.1;1;0.00537821;2.56003;0.638494;10;GCCATCTGTT;CAGCAGCTGCTG;-!Myc#MA0147.1;0;0.00766435;3.64823;0.691178;10;GCCATCTGTT;GCCACGTGCG;-!Mycn#MA0104.2;0;0.00802365;3.81926;0.691178;10;GCCATCTGTT;GCCACGTGCG;-!MYC::MAX#MA0059.1;0;0.00873298;4.1569;0.691178;10;GCCATCTGTT;ACCACGTGGTC;-!HMG-I/Y#MA0045.1;5;0.0121308;5.77428;0.88625;10;GCCATCTGTT;GTTTTTCCATTTGTTG;-!ZEB1#MA0103.1;-2;0.0146494;6.97312;0.993804;6;GCCATCTGTT;CACCTG;+!Myb#MA0100.1;-2;0.0167201;7.95877;0.997635;8;GCCATCTGTT;CAACGGCC;-
}}
}}

Latest revision as of 12:37, 7 September 2012

Full Name: NEUROD1_Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Motif matrix
POACGT
114824622358314
2591379015778
36945111818
44510184246
54619410203356
616243943723
71414184570
832945705
923122310252345
1023116432122530

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
TAL1::TCF3#MA0091.126.24679e-060.002973470.0059328810GCCATCTGTTCGACCATCTGTT+
YY1#MA0095.100.001358590.6466890.4999556GCCATCTGTTGCCATC+
CTCF#MA0139.140.002167871.031910.51473310GCCATCTGTTTAGCGCCCCCTGGTGGCCA-
sna#MA0086.1-20.003535181.682750.6357256GCCATCTGTTCACCTG-
twi#MA0249.110.00465122.213970.63572510GCCATCTGTTTCGCATATGTTG+
Gata1#MA0035.1-10.004685532.230310.6357256GCCATCTGTTCCATCC-
Myf#MA0055.110.005378212.560030.63849410GCCATCTGTTCAGCAGCTGCTG-
Myc#MA0147.100.007664353.648230.69117810GCCATCTGTTGCCACGTGCG-
Mycn#MA0104.200.008023653.819260.69117810GCCATCTGTTGCCACGTGCG-
MYC::MAX#MA0059.100.008732984.15690.69117810GCCATCTGTTACCACGTGGTC-
HMG-I/Y#MA0045.150.01213085.774280.8862510GCCATCTGTTGTTTTTCCATTTGTTG-
ZEB1#MA0103.1-20.01464946.973120.9938046GCCATCTGTTCACCTG+
Myb#MA0100.1-20.01672017.958770.9976358GCCATCTGTTCAACGGCC-
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