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MacroAPE 1083:Motif GNACTT: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!01;0;0;1936;0!02;484;484;484;484!03;1936;0;0;0!04;0;1936;0;0!05;0;0;0;1936!06;0;0;0;1936 |macroape_1083_sample_pvalues=11376-118A8;0.116613!1...")
 
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;0.499249!11759-123H4;0.398981!11761-123H6;0.230487!11842-124H6;0.513209!11837-124H1;0.426923!10568-108B1;0.568574!13230-141I8;0.0860415!13231-141I9;0.304548!10696-109G3;0.399885!10493-107B7;0.986669!10494-107B8;0.438465!10850-111F4;0.767633!10851-111F5;0.560511!10852-111F6;0.648322!10853-111F7;0.686632!10854-111F8;0.872647!10855-111F9;0.547246!10856-111G1;0.506018!10847-111F1;0.99906!10846-111E9;0.67836!10848-111F2;0.620358!10845-111E8;0.592012!10857-111G2;0.334007!10858-111G3;0.494431!10156-103A3;0.367487!11901-125F2;0.265299!11902-125F3;0.0366297!11903-125F4;0.054547!10689-109F5;0.0926204!10648-109A9;0.489499!10784-110H1;0.695007!10744-110C6;0.714444!10772-110F7;0.0502805!10474-106I6;0.251788!10600-108E6;0.315009!10684-109E9;0.582787!12226-129F3;0.0820056!12227-129F4;0.404204!10508-107D4;0.187803!10539-107G8;0.0614236!10607-108F4;0.0992767!10555-107I6;0.096579!10774-110F9;0.0522796!10637-108I7;0.782767!10663-109C6;0.723055!10728-110A8;0.243742!10729-110A9;0.286548!10430-106D7;0.463636!10730-110B1;0.328644!10813-111B3;0.0025364!10812-111B2;0.15855!10037-101F1;0.317769!10172-103C1;0.260838!10163-103B1;0.207184!10076-102A4;0.293783!10073-102A1;0.221835!10036-101E9;0.112588!10195-103E6;0.222499!10277-104E7;0.23786!10434-106E2;0.465765!10550-107I1;0.285331!10545-107H5;0.479294!10544-107H4;0.79809!10704-109H2;0.754306!10510-107D6;0.116765!10558-107I9;0.600323!10020-101D2;0.472398!10732-110B3;0.505888!10049-101G4;0.0879924!10698-109G5;0.572579!10437-106E5;0.352221!10417-106C3;0.692487!10035-101E8;0.917901!10171-103B9;0.252385!10157-103A4;0.187014!10034-101E7;0.254683!10072-101I9;0.252484!10199-103F1;0.136594!10200-103F2;0.681285!10697-109G4;0.751745!10723-110A3;0.518666!10179-103C8;0.913157!10160-103A7;0.431571!10180-103C9;0.369453!10162-103A9;0.661775!10021-101D3;0.684912!10840-111E3;0.390587!10706-109H4;0.162479!10033-101E6;0.48843!10032-101E5;0.274755!10490-107B4;0.223!10439-106E7;0.241617!10022-101D4;0.208016!10176-103C5;0.560178!10469-106I1;0.170193!10067-101I4;0.856651!10411-106B6;0.343925!10471-106I3;0.320271!10030-101E3;0.745179!10475-106I7;0.452516!10787-110H4;0.108717!10477-106I9;0.456156!10695-109G2;0.357938!11771-123I7;0.307482!11772-123I8;0.0648549!11773-123I9;0.0214044!10093-102C3;0.158157!10442-106F1;0.774895!10442-106F1;0.404536!10201-103F3;0.403756!10639-108I9;0.560599!11843-124H7;0.881011!11841-124H5;0.388909!10693-109F9;0.519539!10436-106E4;0.858603!10483-107A6;0.928525!10282-104F3;0.174724!10023-101D5;0.819516!10066-101I3;0.922329!10065-101I2;0.9059!10800-110I8;0.916102!10610-108F7;0.0474246!10841-111E4;0.0522334!10541-107H1;0.188697!10842-111E5;0.417107!10562-108A4;0.0785469!10024-101D6;0.0639245!10064-101I1;0.0502958!10609-108F6;0.246656!10048-101G3;0.308656!10781-110G7;0.611447!10181-103D1;0.251591!10159-103A6;0.393743!10056-101H2;0.472052!10737-110B8;0.229131!10025-101D7;0.566992!10044-101F8;0.00912102!10424-106D1;0.1275!10463-106H4;0.0816784!10616-108G4;0.519971!10486-107A9;0.561339!10062-101H8;0.859315!10202-103F4;0.826149!10158-103A5;0.52355!10441-106E9;0.59327!10031-101E4;0.228729!10063-101H9;0.217081!10063-101H9;0.132308!11763-123H8;0.693414!11765-123I1;0.46431!11768-123I4;0.228857!10807-111A6;0.330694!10790-110H7;0.438948!10798-110I6;0.404875!10786-110H3;0.201702!10591-108D6;0.215955!10593-108D8;0.127859!10590-108D5;0.400391!10026-101D8;0.470553!10096-102C6;0.132035!10168-103B6;0.0238153!10154-103A1;0.361274!10209-103G2;0.468423!10061-101H7;0.830678!10027-101D9;0.588313!10043-101F7;0.0596354!10783-110G9;0.242307!10028-101E1;0.539886!10060-101H6;0.482567!10203-103F5;0.941065!10059-101H5;0.940078!10047-101G2;0.80797!10029-101E2;0.446495!10058-101H4;0.78764!10418-106C4;0.632148!10492-107B6;0.559384!10694-109G1;0.369374!10797-110I5;0.441381!10057-101H3;0.310735!10100-102D1;0.40772!10055-101H1;0.786434!10204-103F6;0.533454!10191-103E2;0.686514!10563-108A5;0.278295
|name=motif_GNACTT
|name=motif_GNACTT
|tomtom_result=HNF4A#MA0114.1;1;0.00576219;2.7428;1;6;GAACTT;TGACCTTTGGCCT;-!GABPA#MA0062.2;1;0.0121638;5.78998;1;6;GAACTT;GCCACTTCCGG;-!Nkx3-2#MA0122.1;1;0.0180784;8.60532;1;6;GAACTT;TCCACTTAA;-!bap#MA0211.1;-1;0.0184513;8.7828;1;5;GAACTT;CACTTAA;-!NKX3-1#MA0124.1;0;0.0191879;9.13343;1;6;GAACTT;ATACTTA;+!NR2F1#MA0017.1;1;0.0196388;9.34807;1;6;GAACTT;TGACCTTTGAACCT;+
}}
}}

Latest revision as of 12:48, 7 September 2012

Full Name: motif_GNACTT

Motif matrix
POACGT
010019360
02484484484484
031936000
040193600
050001936
060001936

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
HNF4A#MA0114.110.005762192.742816GAACTTTGACCTTTGGCCT-
GABPA#MA0062.210.01216385.7899816GAACTTGCCACTTCCGG-
Nkx3-2#MA0122.110.01807848.6053216GAACTTTCCACTTAA-
bap#MA0211.1-10.01845138.782815GAACTTCACTTAA-
NKX3-1#MA0124.100.01918799.1334316GAACTTATACTTA+
NR2F1#MA0017.110.01963889.3480716GAACTTTGACCTTTGAACCT+
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