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MacroAPE 1083:CDX2 f1: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;17.293413173652674;1.023952095808384;2.502994011976047;15.13173652694609!2;2.161676646706584;0.0;0.0;33.79041916167662!3;0.0;0.0;1.023952095...")
 
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D6;0.0892849!10464-106H5;0.134564!10827-111C8;0.135038!10789-110H6;0.376909!10828-111C9;0.935042!10788-110H5;0.611517!10792-110H9;0.19388!10765-110E9;0.548561!10829-111D1;0.453993!10830-111D2;0.389493!10831-111D3;0.443594!10832-111D4;0.77054!10833-111D5;0.754219!10764-110E8;0.606172!10770-110F5;0.819924!10399-106A3;0.422284!10400-106A4;0.70263!10405-106A9;0.58966!10834-111D6;0.651484!10835-111D7;0.863092!10836-111D8;0.181574!10837-111D9;0.000963223!10699-109G6;0.00646475!10802-111A1;0.00804744!10796-110I4;3.08046e-05!10010-101C1;0.913701!10810-111A9;0.055736!10421-106C7;0.331756!10708-109H6;0.0284365!12235-129G3;0.307868!12236-129G4;0.290298!12237-129G5;0.747907!10167-103B5;0.807211!10151-102I7;0.597009!10428-106D5;0.176232!10795-110I3;0.746315!10805-111A4;0.472003!10052-101G7;0.339594!10189-103D9;0.0997041!10589-108D4;0.000310411!10425-106D2;0.341646!10427-106D4;0.440533!10702-109G9;0.559519!10432-106D9;0.405872!10496-107C1;0.944735!10718-109I7;0.373848!10011-101C2;0.571734!10053-101G8;0.000489188!10686-109F2;0.363135!10084-102B3;0.644836!10012-101C3;0.297143!10085-102B4;0.232436!10482-107A5;0.557699!10419-106C5;0.455473!10080-102A8;0.48628!10760-110E4;0.0558641!10709-109H7;0.132251!10710-109H8;0.481895!10703-109H1;0.731497!10719-109I8;0.439515!10642-109A3;0.797067!10177-103C6;0.814088!10164-103B2;0.255892!10173-103C2;0.0873695!10166-103B4;0.0581264!10083-102B2;0.0120798!10188-103D8;0.104315!10552-107I3;0.524378!10553-107I4;0.534847!10013-101C4;0.00153811!10536-107G5;0.00895975!10618-108G6;0.665534!10423-106C9;0.768747!10785-110H2;0.780311!12238-129G6;0.590496!12239-129G7;0.0269667!12240-129G8;0.169951!10416-106C2;0.0999453!10801-110I9;0.204517!10766-110F1;0.0598124!10824-111C5;0.0430718!10825-111C6;0.928069!10826-111C7;0.896459!10454-106G4;0.923154!10409-106B4;0.301044!10638-108I8;0.0759144!10636-108I6;0.418633!10513-107D9;9.29195e-06!10420-106C6;0.595458!10082-102B1;0.55534!10014-101C5;0.000516495!10070-101I7;0.00618633!10452-106G2;0.00114281!10453-106G3;0.276105!10449-106F8;0.103289!10042-101F6;0.107516!10069-101I6;0.265034!10193-103E4;0.0574293!10631-108I1;0.287532!10438-106E6;0.246025!10488-107B2;0.903121!10196-103E7;0.707253!10071-101I8;0.000650444!10071-101I8;0.136982!10041-101F5;0.373017!10451-106G1;0.963855!10450-106F9;0.0022384!10604-108F1;0.0393812!10605-108F2;0.455501!10606-108F3;0.210916!10603-108E9;0.312501!10497-107C2;0.924385!10448-106F7;0.00111651!10643-109A4;0.868141!10426-106D3;0.0140182!10431-106D8;0.0688752!10197-103E8;0.0218928!10443-106F2;0.00040765!10815-111B5;0.516746!10816-111B6;0.92859!10817-111B7;0.779791!10015-101C6;0.978373!10410-106B5;0.0228566!10054-101G9;0.792499!10758-110E2;0.579397!10711-109H9;0.936799!10040-101F4;0.84222!10470-106I2;0.158255!10415-106C1;0.00144015!10198-103E9;0.928917!10614-108G2;0.107444!10612-108F9;0.00814715!10549-107H9;0.376591!10615-108G3;0.16697!10487-107B1;0.102011!10433-106E1;0.0699163!10688-109F4;0.187163!10444-106F3;0.0218251!10444-106F3;0.293079!10485-107A8;0.26665!10413-106B8;0.611691!10175-103C4;0.520312!10161-103A8;0.26864!12131-128D7;0.119081!10624-108H3;0.242547!10712-109I1;0.349191!10205-103F7;0.127252!10206-103F8;0.0684347!10207-103F9;0.242385!10050-101G5;0.0274556!10051-101G6;0.0105243!10016-101C7;0.102046!10046-101G1;0.0323081!10778-110G4;0.0557188!10633-108I3;0.773401!10818-111B8;0.062639!10819-111B9;0.192312!10820-111C1;0.192657!10484-107A7;0.137424!10808-111A7;0.0919488!10169-103B7;0.663004!10153-102I9;0.266565!13425-144D5;0.107507!13433-144E4;0.787924!13437-144E8;0.575367!11904-125F5;0.596406!11905-125F6;0.0703341!10039-101F3;0.015294!10791-110H8;0.253521!10017-101C8;0.904446!10045-101F9;0.254703!10509-107D5;0.00327272!10839-111E2;0.601581!10692-109F8;0.60527!10079-102A7;0.0314574!10078-102A6;0.0444431!10721-110A1;0.039396!10569-108B2;0.472036!10570-108B3;0.957132!10571-108B4;0.628577!10647-109A8;0.792751!10752-110D5;0.546913!10782-110G8;0.195716!10726-110A6;0.183458!10018-101C9;0.21307!10086-102B5;0.630575!10182-103D2;0.0545749!10165-103B3;0.378309!10499-107C4;0.144361!10408-106B3;0.957343!10019-101D1;0.26637!10068-101I5;0.705253!10075-102A3;0.653741!10077-102A5;0.818345!10727-110A7;0.532349!10775-110G1;0.275606!10412-106B7;0.415015!12231-129F8;0.488476!12232-129F9;0.0229405!12233-129G1;0.0656073!12234-129G2;0.0774298!10414-106B9;0.0678955!10170-103B8;0.000241091!10183-103D3;0.37411!10150-102I6;0.255136!10174-103C3;0.11635!10155-103A2;0.331019!10038-101F2;0.152058!10838-111E1;0.569992!10759-110E3;0.0514822!10514-107E1;0.806351!10465-106H6;0.524759!10691-109F7;0.202957!10843-111E6;0.875946!10844-111E7;0.502134!11747-123G1;0.830411!11748-123G2;0.48379!11749-123G3;0.4812!11750-123G4;0.284465!11751-123G5;0.12101!11840-124H4;0.475814!11752-123G6;0.0681768!11753-123G7;0.864052!11754-123G8;0.985105!11755-123G9;0.417005!11756-123H1;0.948578!11833-124G6;0.801603!11760-123H5;0.977623!11836-124G9;0.242487!11758-123H3;0.795193!11835-124G8;0.978642!11762-123H7;0.136281!11838-124H2;0.338264!11757-123H2;0.321316!11759-123H4;0.878075!11761-123H6;0.527728!11842-124H6;0.363694!11837-124H1;0.662503!10568-108B1;0.0323722!13230-141I8;0.508601!13231-141I9;0.277944!10696-109G3;0.141204!10493-107B7;0.536365!10494-107B8;0.569896!10850-111F4;0.792655!10851-111F5;0.788444!10852-111F6;0.734012!10853-111F7;0.922444!10854-111F8;0.772998!10855-111F9;0.612347!10856-111G1;0.736679!10847-111F1;0.954091!10846-111E9;0.264374!10848-111F2;0.495358!10845-111E8;0.0543707!10857-111G2;0.329717!10858-111G3;0.686134!10156-103A3;0.904575!11901-125F2;0.105005!11902-125F3;0.731971!11903-125F4;0.54513!10689-109F5;0.900524!10648-109A9;0.0060916!10784-110H1;0.0290403!10744-110C6;0.929683!10772-110F7;0.364847!10474-106I6;0.535747!10600-108E6;0.0795519!10684-109E9;0.800986!12226-129F3;0.16875!12227-129F4;0.793836!10508-107D4;0.501982!10539-107G8;0.319292!10607-108F4;0.821302!10555-107I6;0.10984!10774-110F9;0.706835!10637-108I7;0.627266!10663-109C6;0.727207!10728-110A8;0.753546!10729-110A9;0.255695!10430-106D7;0.504001!10730-110B1;0.235248!10813-111B3;0.487126!10812-111B2;0.374143!10037-101F1;0.754438!10172-103C1;0.230521!10163-103B1;0.158594!10076-102A4;0.105538!10073-102A1;0.274964!10036-101E9;0.275885!10195-103E6;0.199343!10277-104E7;0.137027!10434-106E2;0.286511!10550-107I1;0.573023!10545-107H5;0.333827!10544-107H4;0.366573!10704-109H2;0.196479!10510-107D6;0.954492!10558-107I9;0.451928!10020-101D2;0.632914!10732-110B3;0.021381!10049-101G4;0.640221!10698-109G5;0.521104!10437-106E5;0.235487!10417-106C3;0.22981!10035-101E8;0.430101!10171-103B9;0.186058!10157-103A4;0.295206!10034-101E7;0.13058!10072-101I9;0.248765!10199-103F1;0.228783!10200-103F2;0.724455!10697-109G4;0.00884973!10723-110A3;0.262599!10179-103C8;0.287457!10160-103A7;0.0302725!10180-103C9;0.0195816!10162-103A9;0.0123317!10021-101D3;0.0143664!10840-111E3;0.063857!10706-109H4;0.440106!10033-101E6;0.381938!10032-101E5;0.183961!10490-107B4;0.257998!10439-106E7;0.868191!10022-101D4;0.0238992!10176-103C5;0.00139585!10469-106I1;0.164387!10067-101I4;0.00652022!10411-106B6;0.0129578!10471-106I3;0.700142!10030-101E3;0.734264!10475-106I7;0.490893!10787-110H4;0.120221!10477-106I9;0.587448!10695-109G2;0.347906!11771-123I7;0.0927247!11772-123I8;0.266447!11773-123I9;0.587746!10093-102C3;0.680857!10442-106F1;0.7577!10442-106F1;0.721684!10201-103F3;0.605713!10639-108I9;6.798e-05!11843-124H7;0.26499!11841-124H5;0.0733927!10693-109F9;0.471393!10436-106E4;0.62256!10483-107A6;0.900571!10282-104F3;0.836683!10023-101D5;0.0338306!10066-101I3;0.0318174!10065-101I2;0.0305596!10800-110I8;0.00409643!10610-108F7;0.04673!10841-111E4;0.380205!10541-107H1;0.444685!10842-111E5;0.634349!10562-108A4;0.232416!10024-101D6;0.947235!10064-101I1;0.139249!10609-108F6;0.183898!10048-101G3;0.017594!10781-110G7;0.00165186!10181-103D1;0.81991!10159-103A6;0.74071!10056-101H2;0.405468!10737-110B8;0.309084!10025-101D7;0.620688!10044-101F8;0.657935!10424-106D1;0.268583!10463-106H4;0.131652!10616-108G4;0.460082!10486-107A9;0.478535!10062-101H8;0.26125!10202-103F4;0.00309152!10158-103A5;0.885145!10441-106E9;0.142449!10031-101E4;0.209988!10063-101H9;0.354672!10063-101H9;0.29414!11763-123H8;0.104638!11765-123I1;0.648338!11768-123I4;0.773318!10807-111A6;0.898233!10790-110H7;0.417442!10798-110I6;0.0376755!10786-110H3;0.169338!10591-108D6;0.478324!10593-108D8;0.066254!10590-108D5;0.232955!10026-101D8;0.753377!10096-102C6;0.0213578!10168-103B6;0.452854!10154-103A1;0.388411!10209-103G2;0.0939663!10061-101H7;0.119057!10027-101D9;0.633864!10043-101F7;0.581553!10783-110G9;0.925076!10028-101E1;0.674937!10060-101H6;0.81705!10203-103F5;0.343353!10059-101H5;0.0686223!10047-101G2;0.0648985!10029-101E2;0.42955!10058-101H4;0.0465827!10418-106C4;0.240593!10492-107B6;0.00865382!10694-109G1;0.460569!10797-110I5;0.00375261!10057-101H3;0.663134!10100-102D1;0.000813345!10055-101H1;0.00349906!10204-103F6;0.00552525!10191-103E2;0.0447952!10563-108A5;0.064046
|name=CDX2_f1
|name=CDX2_f1
|tomtom_result=Abd-B#MA0165.1;-1;1.41012e-05;0.00671218;0.0133501;7;ATTTATGG;TTTATGA;+!cad#MA0216.1;-1;0.000275025;0.130912;0.130188;7;ATTTATGG;TTTATTG;+!TBP#MA0108.2;7;0.000737894;0.351238;0.174647;8;ATTTATGG;CCCCGCCTTTTATAC;-!TBP#MA0108.2;7;0.000737894;0.351238;0.174647;8;ATTTATGG;CCCCGCCTTTTATAC;-!H2.0#MA0448.1;-1;0.0016802;0.799776;0.274098;7;ATTTATGG;TTAATTA;+!MEF2A#MA0052.1;2;0.00200572;0.954721;0.274098;8;ATTTATGG;CTATTTATAG;+!squamosa#MA0082.1;6;0.00212339;1.01074;0.274098;8;ATTTATGG;ATTTCCATTTTTGG;-!CG42234#MA0174.1;-1;0.00231616;1.10249;0.274098;7;ATTTATGG;TTTATTA;+!hb#MA0049.1;2;0.00276451;1.31591;0.290806;8;ATTTATGG;TTTTTTATGC;-!AGL3#MA0001.1;2;0.00466069;2.21849;0.441244;8;ATTTATGG;CTATTTATGG;-!CG4328#MA0182.1;-1;0.00683151;3.2518;0.587965;7;ATTTATGG;TTTATTA;+!br_Z4#MA0013.1;3;0.0144332;6.87022;0.987563;8;ATTTATGG;TTTGTTTACTA;-!PBX1#MA0070.1;4;0.0157598;7.50165;0.987563;8;ATTTATGG;TTTGATTGATGG;-
}}
}}

Latest revision as of 12:59, 7 September 2012

Full Name: CDX2_f1

Motif matrix
POACGT
117.2934131736526741.0239520958083842.50299401197604715.13173652694609
22.1616766467065840.00.033.79041916167662
30.00.01.02395209580838434.92814371257481
43.0718562874251450.00.032.880239520958035
534.928143712574810.01.0239520958083840.0
60.010.922155688622732.275449101796404222.75449101796404
712.8562874251496970.910179640718560815.4730538922155536.712574850299407
810.7514970059879982.104790419161676415.3023952095808217.793413173652681

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
Abd-B#MA0165.1-11.41012e-050.006712180.01335017ATTTATGGTTTATGA+
cad#MA0216.1-10.0002750250.1309120.1301887ATTTATGGTTTATTG+
TBP#MA0108.270.0007378940.3512380.1746478ATTTATGGCCCCGCCTTTTATAC-
TBP#MA0108.270.0007378940.3512380.1746478ATTTATGGCCCCGCCTTTTATAC-
H2.0#MA0448.1-10.00168020.7997760.2740987ATTTATGGTTAATTA+
MEF2A#MA0052.120.002005720.9547210.2740988ATTTATGGCTATTTATAG+
squamosa#MA0082.160.002123391.010740.2740988ATTTATGGATTTCCATTTTTGG-
CG42234#MA0174.1-10.002316161.102490.2740987ATTTATGGTTTATTA+
hb#MA0049.120.002764511.315910.2908068ATTTATGGTTTTTTATGC-
AGL3#MA0001.120.004660692.218490.4412448ATTTATGGCTATTTATGG-
CG4328#MA0182.1-10.006831513.25180.5879657ATTTATGGTTTATTA+
br_Z4#MA0013.130.01443326.870220.9875638ATTTATGGTTTGTTTACTA-
PBX1#MA0070.140.01575987.501650.9875638ATTTATGGTTTGATTGATGG-
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