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MacroAPE 1083:TCTTCTTCTTC,motif479: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;148.532;211.292;182.004;1550.172!2;29.288;1939.284;64.852;58.576!3;267.776;165.268;320.076;1338.88!4;200.832;79.496;326.352;1485.32!5;106.69...")
 
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0.0975362!12182-129A4;0.100099!12183-129A5;0.124162!12184-129A6;0.081757!10809-111A8;0.101714!10597-108E3;0.42372!10717-109I6;0.391419!10455-106G5;0.252889!10534-107G3;0.0523902!10429-106D6;0.112673!10464-106H5;0.0281945!10827-111C8;0.0243523!10789-110H6;0.0108696!10828-111C9;0.0582554!10788-110H5;0.0411683!10792-110H9;0.00711376!10765-110E9;0.0458794!10829-111D1;0.0196701!10830-111D2;0.000966869!10831-111D3;0.0172864!10832-111D4;0.0304895!10833-111D5;0.0337224!10764-110E8;0.0194538!10770-110F5;0.0209373!10399-106A3;0.0557448!10400-106A4;0.0108697!10405-106A9;0.0138306!10834-111D6;0.0211554!10835-111D7;0.0208378!10836-111D8;0.0241544!10837-111D9;0.00441922!10699-109G6;0.00287685!10802-111A1;0.0212699!10796-110I4;0.000783428!10010-101C1;0.966275!10810-111A9;0.000269714!10421-106C7;0.451098!10708-109H6;0.0144533!12235-129G3;0.635403!12236-129G4;0.993153!12237-129G5;0.236826!10167-103B5;0.583905!10151-102I7;0.339311!10428-106D5;0.421843!10795-110I3;0.0179797!10805-111A4;0.000425909!10052-101G7;0.8581!10189-103D9;0.0593166!10589-108D4;0.182741!10425-106D2;0.0741744!10427-106D4;0.0882131!10702-109G9;0.0555475!10432-106D9;0.855696!10496-107C1;0.447307!10718-109I7;0.866207!10011-101C2;0.00164473!10053-101G8;0.0459235!10686-109F2;0.149347!10084-102B3;0.681723!10012-101C3;0.31404!10085-102B4;0.3469!10482-107A5;0.089269!10419-106C5;0.0282852!10080-102A8;0.478198!10760-110E4;2.56685e-06!10709-109H7;0.277957!10710-109H8;0.594177!10703-109H1;0.091254!10719-109I8;0.554306!10642-109A3;0.417319!10177-103C6;0.581783!10164-103B2;0.218484!10173-103C2;0.47501!10166-103B4;0.317147!10083-102B2;0.276573!10188-103D8;0.316044!10552-107I3;0.297268!10553-107I4;0.687041!10013-101C4;0.761925!10536-107G5;0.0242033!10618-108G6;0.00634366!10423-106C9;0.239367!10785-110H2;0.718853!12238-129G6;0.502623!12239-129G7;0.602442!12240-129G8;0.194717!10416-106C2;0.809248!10801-110I9;0.0418723!10766-110F1;0.0130437!10824-111C5;0.00221027!10825-111C6;0.0148257!10826-111C7;0.0127327!10454-106G4;0.0105646!10409-106B4;0.0756375!10638-108I8;0.0120914!10636-108I6;0.468144!10513-107D9;0.813662!10420-106C6;0.653474!10082-102B1;0.723173!10014-101C5;0.0557971!10070-101I7;0.040535!10452-106G2;0.020978!10453-106G3;0.00366108!10449-106F8;0.00011267!10042-101F6;0.000975504!10069-101I6;0.255608!10193-103E4;0.0939297!10631-108I1;0.429997!10438-106E6;0.00850083!10488-107B2;0.625174!10196-103E7;0.166913!10071-101I8;0.55338!10071-101I8;0.0247578!10041-101F5;0.14926!10451-106G1;0.175924!10450-106F9;0.928528!10604-108F1;0.715!10605-108F2;0.251569!10606-108F3;0.0800425!10603-108E9;0.105825!10497-107C2;0.247588!10448-106F7;0.926601!10643-109A4;0.371648!10426-106D3;0.329858!10431-106D8;0.800919!10197-103E8;0.817007!10443-106F2;0.352649!10815-111B5;0.480008!10816-111B6;0.426597!10817-111B7;0.573737!10015-101C6;0.392373!10410-106B5;0.270355!10054-101G9;0.129669!10758-110E2;0.0546978!10711-109H9;0.579156!10040-101F4;0.57347!10470-106I2;0.362378!10415-106C1;0.601504!10198-103E9;0.174912!10614-108G2;0.0880073!10612-108F9;0.471492!10549-107H9;0.293387!10615-108G3;0.605518!10487-107B1;0.462558!10433-106E1;0.676228!10688-109F4;0.423148!10444-106F3;0.477759!10444-106F3;0.111226!10485-107A8;0.125064!10413-106B8;0.0954731!10175-103C4;0.201956!10161-103A8;0.202423!12131-128D7;0.254843!10624-108H3;0.0156822!10712-109I1;0.0240344!10205-103F7;0.00787068!10206-103F8;0.33221!10207-103F9;0.891049!10050-101G5;0.424524!10051-101G6;0.795908!10016-101C7;0.734914!10046-101G1;0.391399!10778-110G4;0.114703!10633-108I3;0.619097!10818-111B8;0.264566!10819-111B9;0.837651!10820-111C1;0.993725!10484-107A7;0.973337!10808-111A7;0.127645!10169-103B7;0.0242249!10153-102I9;0.378291!13425-144D5;0.348668!13433-144E4;0.788088!13437-144E8;0.849286!11904-125F5;0.813383!11905-125F6;0.00246215!10039-101F3;0.0183497!10791-110H8;0.330658!10017-101C8;0.14684!10045-101F9;0.00626263!10509-107D5;6.86619e-05!10839-111E2;0.304022!10692-109F8;0.862887!10079-102A7;0.165548!10078-102A6;0.383242!10721-110A1;0.907901!10569-108B2;0.167275!10570-108B3;0.83685!10571-108B4;0.552314!10647-109A8;0.624767!10752-110D5;0.0373189!10782-110G8;0.0390416!10726-110A6;0.58666!10018-101C9;0.00299055!10086-102B5;0.910889!10182-103D2;0.763844!10165-103B3;0.181311!10499-107C4;0.244773!10408-106B3;0.706572!10019-101D1;0.327442!10068-101I5;0.00108868!10075-102A3;0.000276185!10077-102A5;0.00452884!10727-110A7;0.729057!10775-110G1;0.0426498!10412-106B7;0.0109484!12231-129F8;0.679044!12232-129F9;0.0183414!12233-129G1;0.00156493!12234-129G2;0.00994646!10414-106B9;0.00858949!10170-103B8;0.219364!10183-103D3;0.260569!10150-102I6;0.38383!10174-103C3;0.454036!10155-103A2;0.102064!10038-101F2;0.154571!10838-111E1;0.0946261!10759-110E3;0.400606!10514-107E1;0.0105937!10465-106H6;0.56293!10691-109F7;0.959855!10843-111E6;0.742265!10844-111E7;0.524712!11747-123G1;0.464298!11748-123G2;0.515918!11749-123G3;0.319372!11750-123G4;0.051987!11751-123G5;0.150414!11840-124H4;0.190161!11752-123G6;0.336212!11753-123G7;0.288462!11754-123G8;0.0826975!11755-123G9;0.317876!11756-123H1;0.27472!11833-124G6;0.0896394!11760-123H5;0.173303!11836-124G9;0.0832541!11758-123H3;0.044534!11835-124G8;0.0709157!11762-123H7;0.013301!11838-124H2;0.312121!11757-123H2;0.233563!11759-123H4;0.113779!11761-123H6;0.0568468!11842-124H6;0.0641252!11837-124H1;0.0104677!10568-108B1;0.0267316!13230-141I8;0.791872!13231-141I9;0.152502!10696-109G3;0.0856888!10493-107B7;0.00326368!10494-107B8;0.779728!10850-111F4;0.266003!10851-111F5;0.574719!10852-111F6;0.674508!10853-111F7;0.490589!10854-111F8;0.629567!10855-111F9;0.932961!10856-111G1;0.189175!10847-111F1;0.0448777!10846-111E9;0.238465!10848-111F2;0.677236!10845-111E8;0.490158!10857-111G2;0.533559!10858-111G3;0.518825!10156-103A3;0.826119!11901-125F2;0.411589!11902-125F3;0.0117972!11903-125F4;0.00782036!10689-109F5;0.0101965!10648-109A9;0.127631!10784-110H1;0.326761!10744-110C6;0.906304!10772-110F7;0.0202095!10474-106I6;0.011082!10600-108E6;0.0518487!10684-109E9;0.639481!12226-129F3;0.333606!12227-129F4;0.550199!10508-107D4;0.195947!10539-107G8;0.767624!10607-108F4;0.1803!10555-107I6;0.534115!10774-110F9;0.915845!10637-108I7;0.723165!10663-109C6;0.22763!10728-110A8;0.535972!10729-110A9;0.49859!10430-106D7;0.0858928!10730-110B1;0.0821984!10813-111B3;0.961026!10812-111B2;0.118306!10037-101F1;0.371856!10172-103C1;0.274351!10163-103B1;0.412215!10076-102A4;0.414203!10073-102A1;0.437943!10036-101E9;0.0858665!10195-103E6;0.277441!10277-104E7;0.469463!10434-106E2;0.312596!10550-107I1;0.530135!10545-107H5;0.514398!10544-107H4;0.402953!10704-109H2;0.350234!10510-107D6;0.553259!10558-107I9;0.56582!10020-101D2;0.353913!10732-110B3;0.00499014!10049-101G4;0.39049!10698-109G5;0.720515!10437-106E5;0.122399!10417-106C3;0.259413!10035-101E8;0.205829!10171-103B9;0.35201!10157-103A4;0.392794!10034-101E7;0.402028!10072-101I9;0.300097!10199-103F1;0.0969358!10200-103F2;0.742536!10697-109G4;0.498136!10723-110A3;0.719666!10179-103C8;0.230854!10160-103A7;0.223408!10180-103C9;0.325405!10162-103A9;0.566405!10021-101D3;0.223149!10840-111E3;0.00913358!10706-109H4;0.0828947!10033-101E6;0.0850591!10032-101E5;0.299633!10490-107B4;0.305382!10439-106E7;0.792235!10022-101D4;0.662545!10176-103C5;0.00546965!10469-106I1;0.596305!10067-101I4;0.918864!10411-106B6;0.018262!10471-106I3;0.0377014!10030-101E3;0.502777!10475-106I7;0.0174527!10787-110H4;0.943407!10477-106I9;0.693397!10695-109G2;0.198501!11771-123I7;0.039709!11772-123I8;0.750746!11773-123I9;0.632223!10093-102C3;0.4182!10442-106F1;0.898987!10442-106F1;0.0884197!10201-103F3;0.0613264!10639-108I9;0.574549!11843-124H7;0.828299!11841-124H5;0.60791!10693-109F9;0.683277!10436-106E4;0.986109!10483-107A6;0.873902!10282-104F3;0.188252!10023-101D5;0.102373!10066-101I3;0.95906!10065-101I2;0.0409152!10800-110I8;0.0954902!10610-108F7;0.825475!10841-111E4;0.785394!10541-107H1;0.775618!10842-111E5;0.375443!10562-108A4;0.898568!10024-101D6;0.473273!10064-101I1;0.364534!10609-108F6;0.199853!10048-101G3;0.0270631!10781-110G7;0.369954!10181-103D1;0.209305!10159-103A6;0.156553!10056-101H2;0.239182!10737-110B8;0.0779162!10025-101D7;0.495127!10044-101F8;0.612582!10424-106D1;0.11901!10463-106H4;0.00519961!10616-108G4;0.323081!10486-107A9;0.509233!10062-101H8;0.878515!10202-103F4;0.045145!10158-103A5;0.498313!10441-106E9;0.424344!10031-101E4;0.206658!10063-101H9;0.248223!10063-101H9;0.132396!11763-123H8;0.24124!11765-123I1;0.724329!11768-123I4;0.418269!10807-111A6;0.960095!10790-110H7;0.975314!10798-110I6;0.727344!10786-110H3;0.229454!10591-108D6;0.977728!10593-108D8;0.824656!10590-108D5;0.943711!10026-101D8;0.587485!10096-102C6;0.24863!10168-103B6;0.991248!10154-103A1;0.201962!10209-103G2;0.333067!10061-101H7;0.625831!10027-101D9;0.0315856!10043-101F7;0.623901!10783-110G9;0.203416!10028-101E1;0.0480768!10060-101H6;0.0154336!10203-103F5;0.0917008!10059-101H5;0.983539!10047-101G2;0.295748!10029-101E2;0.969017!10058-101H4;0.0123638!10418-106C4;0.105876!10492-107B6;0.0510205!10694-109G1;0.457636!10797-110I5;0.416682!10057-101H3;0.581958!10100-102D1;0.811725!10055-101H1;0.0197782!10204-103F6;0.0196184!10191-103E2;0.00117009!10563-108A5;0.242359
|name=TCTTCTTCTTC,motif479,CNhs11974,T:2092.0(38.51%),B:23074.0(30.87%),P:1e-32
|name=TCTTCTTCTTC,motif479,CNhs11974,T:2092.0(38.51%),B:23074.0(30.87%),P:1e-32
|tomtom_result=PEND#MA0127.1;0;0.00303415;1.44426;1;10;TCTTCTTCTTC;ACTTCTTATT;+!AZF1#MA0277.1;-1;0.00511142;2.43304;1;9;TCTTCTTCTTC;TTTCTTTTT;-!Klf4#MA0039.1;0;0.00878676;4.1825;1;10;TCTTCTTCTTC;CCTTCCTTTA;-!id1#MA0120.1;0;0.00934121;4.44642;1;11;TCTTCTTCTTC;TTTTCCTTTTCG;+!SFL1#MA0377.1;7;0.010235;4.87188;1;11;TCTTCTTCTTC;TTTTATTTCTTCTATTCTCTA;-!HMG-I/Y#MA0045.1;5;0.0123431;5.87532;1;11;TCTTCTTCTTC;GTTTTTCCATTTGTTG;-!Tal1::Gata1#MA0140.1;4;0.014186;6.75254;1;11;TCTTCTTCTTC;CTTATCTGTCCCCACCAG;-
}}
}}

Latest revision as of 13:05, 7 September 2012

Full Name: TCTTCTTCTTC,motif479,CNhs11974,T:2092.0(38.51%),B:23074.0(30.87%),P:1e-32

Motif matrix
POACGT
1148.532211.292182.0041550.172
229.2881939.28464.85258.576
3267.776165.268320.0761338.88
4200.83279.496326.3521485.32
5106.6921686.152156.9142.256
6135.98349.364100.4161506.24
7299.156271.9666.9441453.94
814.6441506.24292.88278.236
9288.696288.696182.0041332.604
10253.132129.70412.5521696.612
11202.9241244.74428.86215.476

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
PEND#MA0127.100.003034151.44426110TCTTCTTCTTCACTTCTTATT+
AZF1#MA0277.1-10.005111422.4330419TCTTCTTCTTCTTTCTTTTT-
Klf4#MA0039.100.008786764.1825110TCTTCTTCTTCCCTTCCTTTA-
id1#MA0120.100.009341214.44642111TCTTCTTCTTCTTTTCCTTTTCG+
SFL1#MA0377.170.0102354.87188111TCTTCTTCTTCTTTTATTTCTTCTATTCTCTA-
HMG-I/Y#MA0045.150.01234315.87532111TCTTCTTCTTCGTTTTTCCATTTGTTG-
Tal1::Gata1#MA0140.140.0141866.75254111TCTTCTTCTTCCTTATCTGTCCCCACCAG-
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