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MacroAPE 1083:10-WGACAAC: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;1063.525;385.108;2.239;790.367!2;609.008;306.743;1287.425;35.824!3;1865.087;2.239;2.239;369.435!4;53.736;2180.786;2.239;2.239!5;1549.388;2.2...")
 
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.0147652!10789-110H6;0.00301795!10828-111C9;0.0035198!10788-110H5;0.0290709!10792-110H9;0.000885782!10765-110E9;0.0127757!10829-111D1;0.0057761!10830-111D2;0.00578392!10831-111D3;0.0700288!10832-111D4;0.000637968!10833-111D5;0.023698!10764-110E8;0.00528997!10770-110F5;0.0941601!10399-106A3;0.0873749!10400-106A4;0.00264555!10405-106A9;0.00630344!10834-111D6;0.00620712!10835-111D7;0.00131488!10836-111D8;0.0449165!10837-111D9;0.000607739!10699-109G6;8.53018e-05!10802-111A1;0.0238519!10796-110I4;0.00258619!10010-101C1;0.878426!10810-111A9;0.252589!10421-106C7;0.157202!10708-109H6;0.563043!12235-129G3;0.364605!12236-129G4;0.860367!12237-129G5;0.0699156!10167-103B5;0.562489!10151-102I7;0.889933!10428-106D5;0.866236!10795-110I3;0.881063!10805-111A4;0.010558!10052-101G7;0.620391!10189-103D9;0.0464049!10589-108D4;0.123553!10425-106D2;0.500395!10427-106D4;0.868996!10702-109G9;0.19811!10432-106D9;0.380292!10496-107C1;0.794576!10718-109I7;0.289363!10011-101C2;0.0206492!10053-101G8;0.0339921!10686-109F2;0.508859!10084-102B3;0.380062!10012-101C3;0.698498!10085-102B4;0.706761!10482-107A5;0.965993!10419-106C5;0.651756!10080-102A8;0.727831!10760-110E4;0.0422016!10709-109H7;0.688888!10710-109H8;0.830577!10703-109H1;0.41155!10719-109I8;0.562656!10642-109A3;0.14504!10177-103C6;0.514465!10164-103B2;0.927119!10173-103C2;0.967206!10166-103B4;0.914205!10083-102B2;0.680768!10188-103D8;0.924724!10552-107I3;0.903701!10553-107I4;0.929017!10013-101C4;0.141254!10536-107G5;0.0896121!10618-108G6;0.866108!10423-106C9;0.715789!10785-110H2;0.145156!12238-129G6;0.714317!12239-129G7;0.188379!12240-129G8;0.190353!10416-106C2;0.513589!10801-110I9;0.0170382!10766-110F1;0.0210661!10824-111C5;0.000713996!10825-111C6;0.0639728!10826-111C7;0.0492522!10454-106G4;0.0410107!10409-106B4;0.0161946!10638-108I8;0.000403469!10636-108I6;0.312605!10513-107D9;0.857055!10420-106C6;0.719104!10082-102B1;0.623292!10014-101C5;0.0166374!10070-101I7;0.00178929!10452-106G2;0.036317!10453-106G3;0.704438!10449-106F8;0.462004!10042-101F6;0.35983!10069-101I6;0.717046!10193-103E4;0.0859314!10631-108I1;0.871313!10438-106E6;0.00789585!10488-107B2;0.35184!10196-103E7;0.401772!10071-101I8;0.0112483!10071-101I8;0.293855!10041-101F5;0.991384!10451-106G1;0.370091!10450-106F9;0.567724!10604-108F1;0.800359!10605-108F2;0.443064!10606-108F3;0.571341!10603-108E9;0.307459!10497-107C2;0.531474!10448-106F7;0.667687!10643-109A4;0.168804!10426-106D3;0.521099!10431-106D8;0.775417!10197-103E8;0.571547!10443-106F2;0.0359586!10815-111B5;0.903571!10816-111B6;0.397161!10817-111B7;0.894532!10015-101C6;0.539991!10410-106B5;0.109752!10054-101G9;0.236999!10758-110E2;0.50594!10711-109H9;0.313879!10040-101F4;0.289291!10470-106I2;0.942157!10415-106C1;0.964287!10198-103E9;0.998189!10614-108G2;0.000453934!10612-108F9;0.33566!10549-107H9;0.713325!10615-108G3;0.739847!10487-107B1;0.846561!10433-106E1;0.891469!10688-109F4;0.887332!10444-106F3;0.630316!10444-106F3;0.569729!10485-107A8;0.633134!10413-106B8;0.184502!10175-103C4;0.725419!10161-103A8;0.991429!12131-128D7;0.95542!10624-108H3;0.910249!10712-109I1;0.537486!10205-103F7;0.00206396!10206-103F8;0.00766112!10207-103F9;0.00187981!10050-101G5;0.000464886!10051-101G6;8.92534e-05!10016-101C7;0.000393542!10046-101G1;6.00157e-06!10778-110G4;0.00810696!10633-108I3;0.673867!10818-111B8;0.650391!10819-111B9;0.216955!10820-111C1;0.250692!10484-107A7;0.26316!10808-111A7;0.106584!10169-103B7;0.0298642!10153-102I9;0.873691!13425-144D5;0.982204!13433-144E4;0.171253!13437-144E8;0.125771!11904-125F5;0.0766291!11905-125F6;0.910355!10039-101F3;0.687057!10791-110H8;0.960626!10017-101C8;0.56453!10045-101F9;0.000798216!10509-107D5;0.000821918!10839-111E2;0.623878!10692-109F8;0.381862!10079-102A7;0.391057!10078-102A6;0.0552744!10721-110A1;0.000404197!10569-108B2;0.0606281!10570-108B3;0.349204!10571-108B4;0.499599!10647-109A8;0.40589!10752-110D5;0.573111!10782-110G8;0.0074198!10726-110A6;0.861441!10018-101C9;0.15879!10086-102B5;0.144907!10182-103D2;0.775874!10165-103B3;0.979127!10499-107C4;0.856491!10408-106B3;0.487111!10019-101D1;0.228805!10068-101I5;0.00153344!10075-102A3;0.00472407!10077-102A5;0.000596655!10727-110A7;0.831808!10775-110G1;0.00457365!10412-106B7;0.0882392!12231-129F8;0.759488!12232-129F9;0.187486!12233-129G1;0.0242169!12234-129G2;0.195552!10414-106B9;0.153632!10170-103B8;0.271765!10183-103D3;0.697431!10150-102I6;0.574486!10174-103C3;0.818552!10155-103A2;0.738793!10038-101F2;0.923135!10838-111E1;0.76955!10759-110E3;0.257195!10514-107E1;0.860187!10465-106H6;0.400665!10691-109F7;0.655833!10843-111E6;0.498781!10844-111E7;0.439271!11747-123G1;0.97043!11748-123G2;0.292653!11749-123G3;0.989349!11750-123G4;0.483893!11751-123G5;0.797605!11840-124H4;0.980004!11752-123G6;0.622393!11753-123G7;0.187452!11754-123G8;0.817454!11755-123G9;0.779889!11756-123H1;0.916236!11833-124G6;0.896849!11760-123H5;0.278943!11836-124G9;0.605345!11758-123H3;0.856521!11835-124G8;0.521054!11762-123H7;0.374516!11838-124H2;0.336856!11757-123H2;0.868828!11759-123H4;0.29384!11761-123H6;0.608621!11842-124H6;0.829363!11837-124H1;0.545684!10568-108B1;0.70165!13230-141I8;0.218849!13231-141I9;0.872786!10696-109G3;0.782137!10493-107B7;0.407002!10494-107B8;0.919705!10850-111F4;0.479835!10851-111F5;0.0640894!10852-111F6;0.135528!10853-111F7;0.0373514!10854-111F8;0.152504!10855-111F9;0.000714532!10856-111G1;0.0151288!10847-111F1;0.00172116!10846-111E9;0.0411941!10848-111F2;0.00614817!10845-111E8;0.237589!10857-111G2;0.549841!10858-111G3;0.0903916!10156-103A3;0.716438!11901-125F2;0.820073!11902-125F3;0.799221!11903-125F4;0.896206!10689-109F5;0.940262!10648-109A9;0.783557!10784-110H1;0.261574!10744-110C6;0.663458!10772-110F7;0.00265812!10474-106I6;0.055948!10600-108E6;0.60752!10684-109E9;0.806951!12226-129F3;0.271036!12227-129F4;0.700575!10508-107D4;0.150353!10539-107G8;0.622368!10607-108F4;0.889169!10555-107I6;0.492533!10774-110F9;0.543169!10637-108I7;0.355445!10663-109C6;0.739832!10728-110A8;0.00126639!10729-110A9;0.548965!10430-106D7;0.691657!10730-110B1;0.131265!10813-111B3;0.282703!10812-111B2;0.219629!10037-101F1;0.526175!10172-103C1;0.866428!10163-103B1;0.635991!10076-102A4;0.84842!10073-102A1;0.77906!10036-101E9;0.727242!10195-103E6;0.909207!10277-104E7;0.908008!10434-106E2;0.792371!10550-107I1;0.592354!10545-107H5;0.642047!10544-107H4;0.92711!10704-109H2;0.967942!10510-107D6;0.192055!10558-107I9;0.188468!10020-101D2;0.688515!10732-110B3;0.0387185!10049-101G4;0.0250183!10698-109G5;0.0580119!10437-106E5;0.306025!10417-106C3;0.788183!10035-101E8;0.682316!10171-103B9;0.983122!10157-103A4;0.716374!10034-101E7;0.808112!10072-101I9;0.951033!10199-103F1;0.821043!10200-103F2;0.0610876!10697-109G4;0.0768781!10723-110A3;0.704432!10179-103C8;0.704952!10160-103A7;0.479443!10180-103C9;0.977985!10162-103A9;0.250894!10021-101D3;0.253915!10840-111E3;0.00559224!10706-109H4;0.0635234!10033-101E6;0.786398!10032-101E5;0.964115!10490-107B4;0.947039!10439-106E7;0.99368!10022-101D4;0.307745!10176-103C5;0.0497502!10469-106I1;0.810013!10067-101I4;0.130997!10411-106B6;0.539257!10471-106I3;0.373448!10030-101E3;0.801944!10475-106I7;0.0995832!10787-110H4;0.155463!10477-106I9;0.356689!10695-109G2;0.879462!11771-123I7;0.447085!11772-123I8;0.480591!11773-123I9;0.318426!10093-102C3;0.02142!10442-106F1;0.0474062!10442-106F1;0.379119!10201-103F3;0.284534!10639-108I9;0.0217589!11843-124H7;0.384284!11841-124H5;0.887317!10693-109F9;0.521269!10436-106E4;0.513569!10483-107A6;0.404116!10282-104F3;0.892695!10023-101D5;0.0120256!10066-101I3;0.00536813!10065-101I2;0.663894!10800-110I8;0.441887!10610-108F7;0.830624!10841-111E4;0.490988!10541-107H1;0.401685!10842-111E5;0.0718541!10562-108A4;0.099387!10024-101D6;0.98915!10064-101I1;0.0125715!10609-108F6;0.363962!10048-101G3;0.394227!10781-110G7;0.0621678!10181-103D1;0.38683!10159-103A6;0.948961!10056-101H2;0.955618!10737-110B8;0.894965!10025-101D7;0.703671!10044-101F8;0.015355!10424-106D1;0.0218056!10463-106H4;0.044946!10616-108G4;0.179729!10486-107A9;0.746121!10062-101H8;0.420901!10202-103F4;0.0354952!10158-103A5;0.0481573!10441-106E9;0.826039!10031-101E4;0.828459!10063-101H9;0.98746!10063-101H9;0.908883!11763-123H8;0.338347!11765-123I1;0.997752!11768-123I4;0.757312!10807-111A6;0.999347!10790-110H7;0.1549!10798-110I6;0.265108!10786-110H3;0.232544!10591-108D6;0.263312!10593-108D8;0.32224!10590-108D5;0.7623!10026-101D8;0.480533!10096-102C6;0.0205068!10168-103B6;0.110139!10154-103A1;0.897137!10209-103G2;0.983017!10061-101H7;0.0319873!10027-101D9;0.18723!10043-101F7;0.71611!10783-110G9;0.360541!10028-101E1;0.748497!10060-101H6;0.00300712!10203-103F5;0.000700472!10059-101H5;0.0699747!10047-101G2;0.0918653!10029-101E2;0.226391!10058-101H4;0.034967!10418-106C4;0.21956!10492-107B6;0.13696!10694-109G1;0.698534!10797-110I5;0.349602!10057-101H3;0.110914!10100-102D1;0.199077!10055-101H1;0.0187112!10204-103F6;0.196037!10191-103E2;0.0401933!10563-108A5;0.245404
|name=10-WGACAAC,CNhs13239,BestGuess:Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq/Homer(0.741488069271231),T:2239.0(73.77%),B:27365.4(62.56%),P:1e-38
|name=10-WGACAAC,CNhs13239,BestGuess:Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq/Homer(0.741488069271231),T:2239.0(73.77%),B:27365.4(62.56%),P:1e-38
|tomtom_result=HMG-1#MA0044.1;2;0.00666719;3.17358;1;7;AGACAAC;GAATACAAC;-!Gamyb#MA0034.1;-1;0.00728059;3.46556;1;6;AGACAAC;GACAACCGCC;+!br_Z1#MA0010.1;5;0.0115413;5.49367;1;7;AGACAAC;GTAATAAACAAATC;+!AFT2#MA0270.1;-1;0.0119311;5.67921;1;6;AGACAAC;CACACCCC;+!BRCA1#MA0133.1;-2;0.0135074;6.42952;1;5;AGACAAC;ACAACAC;+!mirr#MA0233.1;0;0.0170576;8.1194;1;5;AGACAAC;AAACA;+
}}
}}

Latest revision as of 13:15, 7 September 2012

Full Name: 10-WGACAAC,CNhs13239,BestGuess:Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq/Homer(0.741488069271231),T:2239.0(73.77%),B:27365.4(62.56%),P:1e-38

Motif matrix
POACGT
11063.525385.1082.239790.367
2609.008306.7431287.42535.824
31865.0872.2392.239369.435
453.7362180.7862.2392.239
51549.3882.239485.863201.51
61318.771915.7512.2392.239
7470.191605.3632.239161.208

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation

HMG-1#MA0044.120.006667193.1735817AGACAACGAATACAAC-
Gamyb#MA0034.1-10.007280593.4655616AGACAACGACAACCGCC+
br_Z1#MA0010.150.01154135.4936717AGACAACGTAATAAACAAATC+
AFT2#MA0270.1-10.01193115.6792116AGACAACCACACCCC+
BRCA1#MA0133.1-20.01350746.4295215AGACAACACAACAC+
mirr#MA0233.100.01705768.119415AGACAACAAACA+