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MacroAPE 1083:Motif GNACAT: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!01;0;0;512;0!02;128;128;128;128!03;512;0;0;0!04;0;512;0;0!05;512;0;0;0!06;0;0;0;512 |macroape_1083_sample_pvalues=11376-118A8;0.580545!11327-...")
 
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1!10789-110H6;0.899989!10828-111C9;0.557588!10788-110H5;0.455307!10792-110H9;0.982606!10765-110E9;0.921136!10829-111D1;0.51542!10830-111D2;0.869467!10831-111D3;0.452641!10832-111D4;0.626065!10833-111D5;0.476395!10764-110E8;0.927783!10770-110F5;0.516391!10399-106A3;0.967341!10400-106A4;0.694872!10405-106A9;0.545163!10834-111D6;0.64444!10835-111D7;0.980996!10836-111D8;0.783832!10837-111D9;0.412865!10699-109G6;0.308827!10802-111A1;0.538728!10796-110I4;0.172216!10010-101C1;0.704037!10810-111A9;0.883397!10421-106C7;0.880719!10708-109H6;0.489319!12235-129G3;0.566648!12236-129G4;0.339072!12237-129G5;0.735395!10167-103B5;0.559441!10151-102I7;0.162266!10428-106D5;0.266022!10795-110I3;0.944011!10805-111A4;0.780573!10052-101G7;0.522198!10189-103D9;0.625982!10589-108D4;0.509206!10425-106D2;0.812354!10427-106D4;0.408452!10702-109G9;0.718588!10432-106D9;0.0843254!10496-107C1;0.664845!10718-109I7;0.75079!10011-101C2;0.500436!10053-101G8;0.700689!10686-109F2;0.802925!10084-102B3;0.825532!10012-101C3;0.36062!10085-102B4;0.330032!10482-107A5;0.409073!10419-106C5;0.756695!10080-102A8;0.861713!10760-110E4;0.621611!10709-109H7;0.877291!10710-109H8;0.637975!10703-109H1;0.872302!10719-109I8;0.455932!10642-109A3;0.24115!10177-103C6;0.507577!10164-103B2;0.249603!10173-103C2;0.23176!10166-103B4;0.297831!10083-102B2;0.295538!10188-103D8;0.441855!10552-107I3;0.442449!10553-107I4;0.325551!10013-101C4;0.720437!10536-107G5;0.82513!10618-108G6;0.786543!10423-106C9;0.711647!10785-110H2;0.96672!12238-129G6;0.808757!12239-129G7;0.472866!12240-129G8;0.200808!10416-106C2;0.511659!10801-110I9;0.370494!10766-110F1;0.845919!10824-111C5;0.568216!10825-111C6;0.362582!10826-111C7;0.398174!10454-106G4;0.426186!10409-106B4;0.491132!10638-108I8;0.17359!10636-108I6;0.533864!10513-107D9;0.882169!10420-106C6;0.914924!10082-102B1;0.687348!10014-101C5;0.544885!10070-101I7;0.773355!10452-106G2;0.871637!10453-106G3;0.319544!10449-106F8;0.946807!10042-101F6;0.831824!10069-101I6;0.467248!10193-103E4;0.365748!10631-108I1;0.45044!10438-106E6;0.679085!10488-107B2;0.741044!10196-103E7;0.733564!10071-101I8;0.301285!10071-101I8;0.91542!10041-101F5;0.372567!10451-106G1;0.351027!10450-106F9;0.812572!10604-108F1;0.839285!10605-108F2;0.916905!10606-108F3;0.626343!10603-108E9;0.835423!10497-107C2;0.924012!10448-106F7;0.721564!10643-109A4;0.953634!10426-106D3;0.162316!10431-106D8;0.352434!10197-103E8;0.931995!10443-106F2;0.397903!10815-111B5;0.164336!10816-111B6;0.617613!10817-111B7;0.901412!10015-101C6;0.668846!10410-106B5;0.984402!10054-101G9;0.838035!10758-110E2;0.928967!10711-109H9;0.242856!10040-101F4;0.944157!10470-106I2;0.307427!10415-106C1;0.728213!10198-103E9;0.893349!10614-108G2;0.566981!10612-108F9;0.520146!10549-107H9;0.495298!10615-108G3;0.861588!10487-107B1;0.260609!10433-106E1;0.719517!10688-109F4;0.775117!10444-106F3;0.705526!10444-106F3;0.590541!10485-107A8;0.638458!10413-106B8;0.978476!10175-103C4;0.645462!10161-103A8;0.258698!12131-128D7;0.248214!10624-108H3;0.807027!10712-109I1;0.0115506!10205-103F7;0.780648!10206-103F8;0.637413!10207-103F9;0.50232!10050-101G5;0.989552!10051-101G6;0.275521!10016-101C7;0.258721!10046-101G1;0.519068!10778-110G4;0.738952!10633-108I3;0.0281926!10818-111B8;0.20144!10819-111B9;0.519031!10820-111C1;0.451331!10484-107A7;0.537948!10808-111A7;0.695605!10169-103B7;0.573825!10153-102I9;0.23211!13425-144D5;0.306857!13433-144E4;0.916962!13437-144E8;0.853611!11904-125F5;0.842756!11905-125F6;0.600122!10039-101F3;0.591733!10791-110H8;0.360261!10017-101C8;0.799561!10045-101F9;0.905786!10509-107D5;0.858178!10839-111E2;0.338835!10692-109F8;0.456168!10079-102A7;0.978798!10078-102A6;0.443598!10721-110A1;0.385251!10569-108B2;0.670518!10570-108B3;0.042749!10571-108B4;0.0478054!10647-109A8;0.122545!10752-110D5;0.373992!10782-110G8;0.274613!10726-110A6;0.124131!10018-101C9;0.800229!10086-102B5;0.932658!10182-103D2;0.490839!10165-103B3;0.314302!10499-107C4;0.324629!10408-106B3;0.589978!10019-101D1;0.265575!10068-101I5;0.374815!10075-102A3;0.659559!10077-102A5;0.861882!10727-110A7;0.517197!10775-110G1;0.726255!10412-106B7;0.734729!12231-129F8;0.0752266!12232-129F9;0.693852!12233-129G1;0.662746!12234-129G2;0.828396!10414-106B9;0.781814!10170-103B8;0.894494!10183-103D3;0.26452!10150-102I6;0.314908!10174-103C3;0.276782!10155-103A2;0.549657!10038-101F2;0.461513!10838-111E1;0.500802!10759-110E3;0.861725!10514-107E1;0.939651!10465-106H6;0.401671!10691-109F7;0.0928644!10843-111E6;0.424928!10844-111E7;0.52226!11747-123G1;0.246083!11748-123G2;0.164942!11749-123G3;0.0863689!11750-123G4;0.338199!11751-123G5;0.135269!11840-124H4;0.267141!11752-123G6;0.191439!11753-123G7;0.236901!11754-123G8;0.324219!11755-123G9;0.523286!11756-123H1;0.324257!11833-124G6;0.417342!11760-123H5;0.291394!11836-124G9;0.117606!11758-123H3;0.649884!11835-124G8;0.0815165!11762-123H7;0.0862384!11838-124H2;0.0130553!11757-123H2;0.0595924!11759-123H4;0.245612!11761-123H6;0.0484713!11842-124H6;0.153939!11837-124H1;0.146739!10568-108B1;0.105823!13230-141I8;0.386992!13231-141I9;0.375574!10696-109G3;0.284618!10493-107B7;0.797071!10494-107B8;0.320293!10850-111F4;0.399365!10851-111F5;0.0360502!10852-111F6;0.405415!10853-111F7;0.246426!10854-111F8;0.4096!10855-111F9;0.246072!10856-111G1;0.608044!10847-111F1;0.272908!10846-111E9;0.704295!10848-111F2;0.331325!10845-111E8;0.785205!10857-111G2;0.326309!10858-111G3;0.65984!10156-103A3;0.404124!11901-125F2;0.290894!11902-125F3;0.866968!11903-125F4;0.718731!10689-109F5;0.865872!10648-109A9;0.451994!10784-110H1;0.031346!10744-110C6;0.87951!10772-110F7;0.699084!10474-106I6;0.732177!10600-108E6;0.283234!10684-109E9;0.869149!12226-129F3;0.711847!12227-129F4;0.827795!10508-107D4;0.568283!10539-107G8;0.665603!10607-108F4;0.951672!10555-107I6;0.309441!10774-110F9;0.778159!10637-108I7;0.503633!10663-109C6;0.25198!10728-110A8;0.193139!10729-110A9;0.302878!10430-106D7;0.277778!10730-110B1;0.775195!10813-111B3;0.616763!10812-111B2;0.419604!10037-101F1;0.0110911!10172-103C1;0.346281!10163-103B1;0.359554!10076-102A4;0.259272!10073-102A1;0.417846!10036-101E9;0.299231!10195-103E6;0.376888!10277-104E7;0.332617!10434-106E2;0.652852!10550-107I1;0.823317!10545-107H5;0.710894!10544-107H4;0.859543!10704-109H2;0.774534!10510-107D6;0.111872!10558-107I9;0.385189!10020-101D2;0.677101!10732-110B3;0.592955!10049-101G4;0.13996!10698-109G5;0.797631!10437-106E5;0.817842!10417-106C3;0.428421!10035-101E8;0.97845!10171-103B9;0.351115!10157-103A4;0.339236!10034-101E7;0.251511!10072-101I9;0.370208!10199-103F1;0.391942!10200-103F2;0.789885!10697-109G4;0.574958!10723-110A3;0.298444!10179-103C8;0.913834!10160-103A7;0.4621!10180-103C9;0.268706!10162-103A9;0.974987!10021-101D3;0.582792!10840-111E3;0.76478!10706-109H4;0.690522!10033-101E6;0.646213!10032-101E5;0.408639!10490-107B4;0.365219!10439-106E7;0.325586!10022-101D4;0.40794!10176-103C5;0.92706!10469-106I1;0.247067!10067-101I4;0.728541!10411-106B6;0.905335!10471-106I3;0.316586!10030-101E3;0.41345!10475-106I7;0.892948!10787-110H4;0.689438!10477-106I9;0.11211!10695-109G2;0.530216!11771-123I7;0.596585!11772-123I8;0.844316!11773-123I9;0.739709!10093-102C3;0.621534!10442-106F1;0.808794!10442-106F1;0.666609!10201-103F3;0.670798!10639-108I9;0.155394!11843-124H7;0.399124!11841-124H5;0.342793!10693-109F9;0.517333!10436-106E4;0.483342!10483-107A6;0.147785!10282-104F3;0.665384!10023-101D5;0.233123!10066-101I3;0.327992!10065-101I2;0.678074!10800-110I8;0.724168!10610-108F7;0.415607!10841-111E4;0.952188!10541-107H1;0.63229!10842-111E5;0.68284!10562-108A4;0.832471!10024-101D6;0.388186!10064-101I1;0.711631!10609-108F6;0.478236!10048-101G3;0.941244!10781-110G7;0.291588!10181-103D1;0.547562!10159-103A6;0.372443!10056-101H2;0.314043!10737-110B8;0.677163!10025-101D7;0.388168!10044-101F8;0.202155!10424-106D1;0.212736!10463-106H4;0.717691!10616-108G4;0.899422!10486-107A9;0.760102!10062-101H8;0.971795!10202-103F4;0.909228!10158-103A5;0.746357!10441-106E9;0.446263!10031-101E4;0.0982619!10063-101H9;0.428877!10063-101H9;0.388544!11763-123H8;0.832821!11765-123I1;0.183674!11768-123I4;0.147333!10807-111A6;0.0484511!10790-110H7;0.62167!10798-110I6;0.836244!10786-110H3;0.662917!10591-108D6;0.750542!10593-108D8;0.973111!10590-108D5;0.955996!10026-101D8;0.88086!10096-102C6;0.992408!10168-103B6;0.935351!10154-103A1;0.338065!10209-103G2;0.281184!10061-101H7;0.843524!10027-101D9;0.787602!10043-101F7;0.0243483!10783-110G9;0.053983!10028-101E1;0.489768!10060-101H6;0.710563!10203-103F5;0.520488!10059-101H5;0.580339!10047-101G2;0.382737!10029-101E2;0.559164!10058-101H4;0.509148!10418-106C4;0.851763!10492-107B6;0.428811!10694-109G1;0.873728!10797-110I5;0.852524!10057-101H3;0.952941!10100-102D1;0.189105!10055-101H1;0.559293!10204-103F6;0.971013!10191-103E2;0.488144!10563-108A5;0.803119
|name=motif_GNACAT
|name=motif_GNACAT
|tomtom_result=TP53#MA0106.1;2;0.00406548;1.93517;1;6;GAACAT;CCGGACATGCCCGGGCATGT;+!TEA1#MA0405.1;2;0.00564087;2.68506;1;6;GAACAT;GCGGACAT;+!NR3C1#MA0113.1;3;0.00592185;2.8188;1;6;GAACAT;TCAGGACATAATGTTCCC;-!lin-14#MA0261.1;0;0.011824;5.6282;1;6;GAACAT;GAACAC;+!Ar#MA0007.1;4;0.0134795;6.41624;1;6;GAACAT;ATAAGAACACCCTGTACCCGCC;+!Cf2_II#MA0015.1;0;0.0149506;7.11648;1;6;GAACAT;GTATATATAC;-!CG11617#MA0173.1;1;0.0177364;8.44252;1;6;GAACAT;TTAACAT;+
}}
}}

Latest revision as of 13:24, 7 September 2012

Full Name: motif_GNACAT

Motif matrix
POACGT
01005120
02128128128128
03512000
04051200
05512000
06000512

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
TP53#MA0106.120.004065481.9351716GAACATCCGGACATGCCCGGGCATGT+
TEA1#MA0405.120.005640872.6850616GAACATGCGGACAT+
NR3C1#MA0113.130.005921852.818816GAACATTCAGGACATAATGTTCCC-
lin-14#MA0261.100.0118245.628216GAACATGAACAC+
Ar#MA0007.140.01347956.4162416GAACATATAAGAACACCCTGTACCCGCC+
Cf2_II#MA0015.100.01495067.1164816GAACATGTATATATAC-
CG11617#MA0173.110.01773648.4425216GAACATTTAACAT+
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