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MacroAPE 1083:8-ATCCRAGC: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;1363.713;1.437;1.437;70.413!2;149.448;1.437;514.446;771.669!3;1.437;990.093;340.569;104.901!4;1.437;885.192;160.944;389.427!5;536.001;67.539...")
 
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1734!10717-109I6;0.280121!10455-106G5;0.810939!10534-107G3;0.0667814!10429-106D6;0.338047!10464-106H5;0.282028!10827-111C8;0.356414!10789-110H6;0.0239382!10828-111C9;0.0538524!10788-110H5;0.115964!10792-110H9;0.069145!10765-110E9;0.0415308!10829-111D1;0.161016!10830-111D2;0.0362493!10831-111D3;0.664628!10832-111D4;0.0733671!10833-111D5;0.0332142!10764-110E8;0.0231954!10770-110F5;0.306919!10399-106A3;0.0354532!10400-106A4;0.160037!10405-106A9;0.0839557!10834-111D6;0.146142!10835-111D7;0.114504!10836-111D8;0.0455453!10837-111D9;0.134756!10699-109G6;0.0452251!10802-111A1;0.111318!10796-110I4;0.0796863!10010-101C1;0.717818!10810-111A9;0.46518!10421-106C7;0.648489!10708-109H6;0.0475871!12235-129G3;0.424528!12236-129G4;0.250703!12237-129G5;0.695959!10167-103B5;0.205571!10151-102I7;0.087763!10428-106D5;0.0492166!10795-110I3;0.150945!10805-111A4;0.0423462!10052-101G7;0.0764378!10189-103D9;0.170704!10589-108D4;0.656528!10425-106D2;0.349965!10427-106D4;0.0484501!10702-109G9;0.155945!10432-106D9;0.133245!10496-107C1;0.823246!10718-109I7;0.797131!10011-101C2;0.0491623!10053-101G8;0.248817!10686-109F2;0.107397!10084-102B3;0.815649!10012-101C3;0.0557583!10085-102B4;0.0766165!10482-107A5;0.0258526!10419-106C5;0.226923!10080-102A8;0.242314!10760-110E4;0.0426493!10709-109H7;0.817593!10710-109H8;0.408998!10703-109H1;0.714844!10719-109I8;0.373221!10642-109A3;0.895316!10177-103C6;0.168994!10164-103B2;0.0493576!10173-103C2;0.0574385!10166-103B4;0.0988338!10083-102B2;0.0798781!10188-103D8;0.0925935!10552-107I3;0.0778987!10553-107I4;0.145751!10013-101C4;0.254378!10536-107G5;0.0838501!10618-108G6;0.688705!10423-106C9;0.331834!10785-110H2;0.335256!12238-129G6;0.927543!12239-129G7;0.837122!12240-129G8;0.713411!10416-106C2;0.988396!10801-110I9;0.0268926!10766-110F1;0.0743956!10824-111C5;0.00382768!10825-111C6;0.0314131!10826-111C7;0.0302931!10454-106G4;0.0375211!10409-106B4;0.0376935!10638-108I8;0.0431111!10636-108I6;0.387345!10513-107D9;0.370537!10420-106C6;0.886015!10082-102B1;0.364811!10014-101C5;0.157037!10070-101I7;0.323531!10452-106G2;0.217946!10453-106G3;0.853553!10449-106F8;0.674064!10042-101F6;0.719921!10069-101I6;0.0284603!10193-103E4;0.180639!10631-108I1;0.113538!10438-106E6;0.127353!10488-107B2;0.853775!10196-103E7;0.318719!10071-101I8;0.141618!10071-101I8;0.0910745!10041-101F5;0.0623434!10451-106G1;0.436595!10450-106F9;0.813841!10604-108F1;0.666181!10605-108F2;0.46188!10606-108F3;0.960229!10603-108E9;0.816822!10497-107C2;0.852672!10448-106F7;0.529303!10643-109A4;0.967934!10426-106D3;0.382182!10431-106D8;0.967496!10197-103E8;0.997427!10443-106F2;0.431977!10815-111B5;0.0507825!10816-111B6;0.0958368!10817-111B7;0.167264!10015-101C6;0.0983705!10410-106B5;0.315009!10054-101G9;0.379756!10758-110E2;0.0499337!10711-109H9;0.541377!10040-101F4;0.647899!10470-106I2;0.0651983!10415-106C1;0.526091!10198-103E9;0.553125!10614-108G2;0.234393!10612-108F9;0.334982!10549-107H9;0.432444!10615-108G3;0.695471!10487-107B1;0.982374!10433-106E1;0.222948!10688-109F4;0.862619!10444-106F3;0.786353!10444-106F3;0.453612!10485-107A8;0.434415!10413-106B8;0.784982!10175-103C4;0.296263!10161-103A8;0.0506859!12131-128D7;0.0458994!10624-108H3;0.736043!10712-109I1;0.741675!10205-103F7;0.167332!10206-103F8;0.431556!10207-103F9;0.328628!10050-101G5;0.721814!10051-101G6;0.240016!10016-101C7;0.59416!10046-101G1;0.495165!10778-110G4;0.106907!10633-108I3;0.585935!10818-111B8;0.247198!10819-111B9;0.926756!10820-111C1;0.864066!10484-107A7;0.927072!10808-111A7;0.474316!10169-103B7;0.162174!10153-102I9;0.0571116!13425-144D5;0.04368!13433-144E4;0.031899!13437-144E8;0.0442454!11904-125F5;0.066096!11905-125F6;0.246333!10039-101F3;0.808725!10791-110H8;0.0616769!10017-101C8;0.863134!10045-101F9;0.227958!10509-107D5;0.00244756!10839-111E2;0.431929!10692-109F8;0.0988511!10079-102A7;0.202018!10078-102A6;0.50408!10721-110A1;0.938872!10569-108B2;0.442782!10570-108B3;0.875975!10571-108B4;0.61248!10647-109A8;0.811288!10752-110D5;0.414248!10782-110G8;0.0369628!10726-110A6;0.699452!10018-101C9;0.578064!10086-102B5;0.199161!10182-103D2;0.583473!10165-103B3;0.0630552!10499-107C4;0.0579183!10408-106B3;0.709091!10019-101D1;0.20224!10068-101I5;0.268448!10075-102A3;0.0467838!10077-102A5;0.276842!10727-110A7;0.0696498!10775-110G1;0.0417361!10412-106B7;0.0120833!12231-129F8;0.684444!12232-129F9;0.337898!12233-129G1;0.33689!12234-129G2;0.581287!10414-106B9;0.966402!10170-103B8;0.0858166!10183-103D3;0.0444839!10150-102I6;0.0624801!10174-103C3;0.0448839!10155-103A2;0.0634728!10038-101F2;0.054382!10838-111E1;0.0599519!10759-110E3;0.0847633!10514-107E1;0.825295!10465-106H6;0.269396!10691-109F7;0.879821!10843-111E6;0.0474829!10844-111E7;0.169201!11747-123G1;0.06161!11748-123G2;0.00013943!11749-123G3;0.00213429!11750-123G4;0.00224727!11751-123G5;0.486631!11840-124H4;0.343745!11752-123G6;0.190366!11753-123G7;0.154271!11754-123G8;0.19717!11755-123G9;0.155287!11756-123H1;0.033874!11833-124G6;0.277963!11760-123H5;0.257363!11836-124G9;0.401879!11758-123H3;0.0543656!11835-124G8;0.159396!11762-123H7;0.85938!11838-124H2;0.152459!11757-123H2;0.287483!11759-123H4;0.0793799!11761-123H6;0.288158!11842-124H6;0.936301!11837-124H1;0.615156!10568-108B1;0.55256!13230-141I8;0.473131!13231-141I9;0.234235!10696-109G3;0.319055!10493-107B7;0.32783!10494-107B8;0.364836!10850-111F4;0.760147!10851-111F5;0.577696!10852-111F6;0.226494!10853-111F7;0.243504!10854-111F8;0.191405!10855-111F9;0.496704!10856-111G1;0.416113!10847-111F1;0.186709!10846-111E9;0.103705!10848-111F2;0.388232!10845-111E8;0.259753!10857-111G2;0.181451!10858-111G3;0.549832!10156-103A3;0.130616!11901-125F2;0.0394928!11902-125F3;0.063643!11903-125F4;0.0742977!10689-109F5;0.0968196!10648-109A9;0.63787!10784-110H1;0.619164!10744-110C6;0.778372!10772-110F7;0.0189887!10474-106I6;0.352068!10600-108E6;0.0220083!10684-109E9;0.614408!12226-129F3;0.00524751!12227-129F4;0.474876!10508-107D4;0.0984758!10539-107G8;0.191039!10607-108F4;0.0485589!10555-107I6;0.940775!10774-110F9;0.187899!10637-108I7;0.573093!10663-109C6;0.520759!10728-110A8;0.344902!10729-110A9;0.79989!10430-106D7;0.420583!10730-110B1;0.619975!10813-111B3;0.290557!10812-111B2;0.450437!10037-101F1;0.606948!10172-103C1;0.0598707!10163-103B1;0.0707901!10076-102A4;0.0368895!10073-102A1;0.0843296!10036-101E9;0.0637194!10195-103E6;0.041339!10277-104E7;0.0768243!10434-106E2;0.0774368!10550-107I1;0.88332!10545-107H5;0.794504!10544-107H4;0.281624!10704-109H2;0.80079!10510-107D6;0.000404695!10558-107I9;0.376651!10020-101D2;0.0250736!10732-110B3;0.230292!10049-101G4;0.851565!10698-109G5;0.301348!10437-106E5;0.639002!10417-106C3;0.708485!10035-101E8;0.533968!10171-103B9;0.0561837!10157-103A4;0.0595416!10034-101E7;0.0467155!10072-101I9;0.0497522!10199-103F1;0.0502033!10200-103F2;0.13418!10697-109G4;0.273152!10723-110A3;0.0844961!10179-103C8;0.224659!10160-103A7;0.143313!10180-103C9;0.0595595!10162-103A9;0.0644054!10021-101D3;0.0209997!10840-111E3;0.265913!10706-109H4;0.11086!10033-101E6;0.351592!10032-101E5;0.0802041!10490-107B4;0.0508748!10439-106E7;0.934035!10022-101D4;0.389589!10176-103C5;0.0422476!10469-106I1;0.0570149!10067-101I4;0.448814!10411-106B6;0.0438519!10471-106I3;0.643313!10030-101E3;0.0811773!10475-106I7;0.0397488!10787-110H4;0.499953!10477-106I9;0.800736!10695-109G2;0.603522!11771-123I7;0.156969!11772-123I8;0.764415!11773-123I9;0.898467!10093-102C3;0.0675673!10442-106F1;0.0217277!10442-106F1;0.131644!10201-103F3;0.158944!10639-108I9;0.179619!11843-124H7;0.189307!11841-124H5;0.578219!10693-109F9;0.291179!10436-106E4;0.107906!10483-107A6;0.441758!10282-104F3;0.714815!10023-101D5;0.545858!10066-101I3;0.346806!10065-101I2;0.185927!10800-110I8;0.103441!10610-108F7;0.0742855!10841-111E4;0.00149702!10541-107H1;0.568072!10842-111E5;0.3721!10562-108A4;0.420972!10024-101D6;0.00735921!10064-101I1;0.751721!10609-108F6;0.382373!10048-101G3;0.00599132!10781-110G7;0.299227!10181-103D1;0.0112302!10159-103A6;0.0860498!10056-101H2;0.0728557!10737-110B8;0.102586!10025-101D7;0.0899273!10044-101F8;0.508134!10424-106D1;0.161918!10463-106H4;0.0556199!10616-108G4;0.443152!10486-107A9;0.686642!10062-101H8;0.86699!10202-103F4;0.0159596!10158-103A5;0.0798276!10441-106E9;0.047678!10031-101E4;0.0992845!10063-101H9;0.0431665!10063-101H9;0.0423604!11763-123H8;0.178608!11765-123I1;0.473571!11768-123I4;0.814694!10807-111A6;0.360669!10790-110H7;0.183634!10798-110I6;0.766483!10786-110H3;0.0673731!10591-108D6;0.654548!10593-108D8;0.562852!10590-108D5;0.370946!10026-101D8;0.937718!10096-102C6;0.408211!10168-103B6;0.237538!10154-103A1;0.0863021!10209-103G2;0.042435!10061-101H7;0.219366!10027-101D9;0.0328724!10043-101F7;0.312617!10783-110G9;0.0529797!10028-101E1;0.492529!10060-101H6;0.00525114!10203-103F5;0.0298301!10059-101H5;0.455516!10047-101G2;0.125965!10029-101E2;0.250584!10058-101H4;0.177341!10418-106C4;0.0793157!10492-107B6;0.144499!10694-109G1;0.486789!10797-110I5;0.0542931!10057-101H3;0.890925!10100-102D1;0.214931!10055-101H1;0.0644852!10204-103F6;0.0514152!10191-103E2;0.00865079!10563-108A5;0.491322
|name=8-ATCCRAGC,BestGuess:POL010.1_DCE_S_III(0.714232428083378),T:1437.0(25.73%),B:7965.5(18.58%),P:1e-34
|name=8-ATCCRAGC,BestGuess:POL010.1_DCE_S_III(0.714232428083378),T:1437.0(25.73%),B:7965.5(18.58%),P:1e-34
|tomtom_result=RTG3#MA0376.1;0;0.0079936;3.80495;1;8;ATCCGAGC;ATATTAGCACGTGCTTAGTC;+!CRZ1#MA0285.1;-2;0.0131682;6.26806;1;6;ATCCGAGC;CTAAGCCAC;+!Nr2e3#MA0164.1;-3;0.0161916;7.7072;1;5;ATCCGAGC;CAAGCTT;+
}}
}}

Latest revision as of 13:26, 7 September 2012

Full Name: 8-ATCCRAGC,BestGuess:POL010.1_DCE_S_III(0.714232428083378),T:1437.0(25.73%),B:7965.5(18.58%),P:1e-34

Motif matrix
POACGT
11363.7131.4371.43770.413
2149.4481.437514.446771.669
31.437990.093340.569104.901
41.437885.192160.944389.427
5536.00167.539569.052264.408
61257.375113.5231.43764.665
71.4371.4371189.836244.29
81.4371432.6891.4371.437

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
RTG3#MA0376.100.00799363.8049518ATCCGAGCATATTAGCACGTGCTTAGTC+
CRZ1#MA0285.1-20.01316826.2680616ATCCGAGCCTAAGCCAC+
Nr2e3#MA0164.1-30.01619167.707215ATCCGAGCCAAGCTT+
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