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MacroAPE 1083:GCCGCAAAC,motif342: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;105;166.5;1120.5;108!2;43.5;1321.5;51;84!3;66;1206;145.5;82.5!4;67.5;249;945;238.5!5;40.5;1225.5;78;156!6;1291.5;51;75;82.5!7;1216.5;60;175....")
 
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0.193164!10828-111C9;0.564033!10788-110H5;0.652229!10792-110H9;0.836811!10765-110E9;0.512293!10829-111D1;0.441163!10830-111D2;0.249075!10831-111D3;0.193733!10832-111D4;0.443932!10833-111D5;0.168219!10764-110E8;0.301831!10770-110F5;0.390136!10399-106A3;0.405198!10400-106A4;0.309918!10405-106A9;0.293352!10834-111D6;0.310341!10835-111D7;0.172028!10836-111D8;0.199234!10837-111D9;0.0520799!10699-109G6;0.129641!10802-111A1;0.131892!10796-110I4;0.253061!10010-101C1;0.500315!10810-111A9;0.455844!10421-106C7;0.139646!10708-109H6;0.287937!12235-129G3;0.541157!12236-129G4;0.224593!12237-129G5;0.761591!10167-103B5;0.367639!10151-102I7;0.959534!10428-106D5;0.889187!10795-110I3;0.929677!10805-111A4;0.291039!10052-101G7;0.0508402!10189-103D9;0.334322!10589-108D4;0.396647!10425-106D2;0.196349!10427-106D4;0.19503!10702-109G9;0.731104!10432-106D9;0.94866!10496-107C1;0.934228!10718-109I7;0.230521!10011-101C2;0.468438!10053-101G8;0.511555!10686-109F2;0.840156!10084-102B3;0.895763!10012-101C3;0.951933!10085-102B4;0.887729!10482-107A5;0.765676!10419-106C5;0.218351!10080-102A8;0.31106!10760-110E4;0.464119!10709-109H7;0.622472!10710-109H8;0.936712!10703-109H1;0.854164!10719-109I8;0.00135404!10642-109A3;0.0579284!10177-103C6;0.0192124!10164-103B2;0.870627!10173-103C2;0.940222!10166-103B4;0.318208!10083-102B2;0.402809!10188-103D8;0.371154!10552-107I3;0.856745!10553-107I4;0.293007!10013-101C4;0.408431!10536-107G5;0.719414!10618-108G6;0.711864!10423-106C9;0.298165!10785-110H2;0.386147!12238-129G6;0.813197!12239-129G7;0.0902945!12240-129G8;0.676059!10416-106C2;0.11498!10801-110I9;0.336166!10766-110F1;0.687829!10824-111C5;0.214363!10825-111C6;0.539914!10826-111C7;0.450973!10454-106G4;0.504437!10409-106B4;0.238317!10638-108I8;0.298849!10636-108I6;0.469125!10513-107D9;0.819556!10420-106C6;0.934882!10082-102B1;0.0511787!10014-101C5;0.491475!10070-101I7;0.316816!10452-106G2;0.250178!10453-106G3;0.245128!10449-106F8;0.0898429!10042-101F6;0.131182!10069-101I6;0.818497!10193-103E4;0.46738!10631-108I1;0.898556!10438-106E6;0.125396!10488-107B2;0.658432!10196-103E7;0.587137!10071-101I8;0.602239!10071-101I8;0.347637!10041-101F5;0.949199!10451-106G1;0.303123!10450-106F9;0.28978!10604-108F1;0.0958707!10605-108F2;0.107549!10606-108F3;0.47043!10603-108E9;0.250219!10497-107C2;0.180195!10448-106F7;0.217864!10643-109A4;0.236589!10426-106D3;0.451405!10431-106D8;0.778645!10197-103E8;0.917497!10443-106F2;0.149415!10815-111B5;0.663312!10816-111B6;0.358302!10817-111B7;0.256575!10015-101C6;0.419166!10410-106B5;0.157605!10054-101G9;0.159409!10758-110E2;0.598318!10711-109H9;0.20371!10040-101F4;0.235532!10470-106I2;0.870177!10415-106C1;0.517172!10198-103E9;0.384476!10614-108G2;0.273172!10612-108F9;0.503845!10549-107H9;0.353292!10615-108G3;0.0708822!10487-107B1;0.112086!10433-106E1;0.256701!10688-109F4;0.30946!10444-106F3;0.980318!10444-106F3;0.785016!10485-107A8;0.815152!10413-106B8;0.447858!10175-103C4;0.43344!10161-103A8;0.942133!12131-128D7;0.948775!10624-108H3;0.466057!10712-109I1;0.0802652!10205-103F7;0.432176!10206-103F8;0.458492!10207-103F9;0.521672!10050-101G5;0.568743!10051-101G6;0.249151!10016-101C7;0.509114!10046-101G1;0.576462!10778-110G4;0.636002!10633-108I3;0.638487!10818-111B8;0.0766097!10819-111B9;0.333108!10820-111C1;0.300985!10484-107A7;0.289655!10808-111A7;0.156159!10169-103B7;0.137009!10153-102I9;0.949553!13425-144D5;0.858852!13433-144E4;0.312928!13437-144E8;0.251884!11904-125F5;0.275385!11905-125F6;0.446363!10039-101F3;0.342245!10791-110H8;0.996769!10017-101C8;0.930191!10045-101F9;0.0758487!10509-107D5;0.360106!10839-111E2;0.360105!10692-109F8;0.564724!10079-102A7;0.709958!10078-102A6;0.340188!10721-110A1;0.301463!10569-108B2;0.289686!10570-108B3;0.495233!10571-108B4;0.309503!10647-109A8;0.791882!10752-110D5;0.455634!10782-110G8;0.640027!10726-110A6;0.487013!10018-101C9;0.19168!10086-102B5;0.117936!10182-103D2;0.400094!10165-103B3;0.936595!10499-107C4;0.97116!10408-106B3;0.398701!10019-101D1;0.156872!10068-101I5;0.186521!10075-102A3;0.293239!10077-102A5;0.181771!10727-110A7;0.0339273!10775-110G1;0.339684!10412-106B7;0.187911!12231-129F8;0.6285!12232-129F9;0.832103!12233-129G1;0.426596!12234-129G2;0.587501!10414-106B9;0.948824!10170-103B8;0.163158!10183-103D3;0.779981!10150-102I6;0.89909!10174-103C3;0.911505!10155-103A2;0.561023!10038-101F2;0.840854!10838-111E1;0.833194!10759-110E3;0.0088915!10514-107E1;0.635982!10465-106H6;0.222253!10691-109F7;0.303052!10843-111E6;0.450203!10844-111E7;0.00158468!11747-123G1;0.00772028!11748-123G2;0.526843!11749-123G3;0.981346!11750-123G4;0.781156!11751-123G5;0.958137!11840-124H4;0.602988!11752-123G6;0.324047!11753-123G7;0.300252!11754-123G8;0.999822!11755-123G9;0.733613!11756-123H1;0.882203!11833-124G6;0.35282!11760-123H5;0.361216!11836-124G9;0.285459!11758-123H3;0.981137!11835-124G8;0.439355!11762-123H7;0.164517!11838-124H2;0.445948!11757-123H2;0.109825!11759-123H4;0.653134!11761-123H6;0.460929!11842-124H6;0.221936!11837-124H1;0.955411!10568-108B1;0.147261!13230-141I8;0.574836!13231-141I9;0.858647!10696-109G3;0.8622!10493-107B7;0.941811!10494-107B8;0.782757!10850-111F4;0.486786!10851-111F5;0.801644!10852-111F6;0.872438!10853-111F7;0.571334!10854-111F8;0.809295!10855-111F9;0.496699!10856-111G1;0.324596!10847-111F1;0.934435!10846-111E9;0.457069!10848-111F2;0.728309!10845-111E8;0.803168!10857-111G2;0.402875!10858-111G3;0.956491!10156-103A3;0.637955!11901-125F2;0.933631!11902-125F3;0.519567!11903-125F4;0.568955!10689-109F5;0.804326!10648-109A9;0.209403!10784-110H1;0.661252!10744-110C6;0.239143!10772-110F7;0.257933!10474-106I6;0.234155!10600-108E6;0.584726!10684-109E9;0.565859!12226-129F3;0.0192406!12227-129F4;0.232279!10508-107D4;0.982678!10539-107G8;0.0115157!10607-108F4;0.0038179!10555-107I6;0.00527639!10774-110F9;0.00123204!10637-108I7;0.572546!10663-109C6;0.171112!10728-110A8;0.12608!10729-110A9;0.0225548!10430-106D7;0.643076!10730-110B1;0.0906136!10813-111B3;0.00202834!10812-111B2;0.681151!10037-101F1;0.16475!10172-103C1;0.9724!10163-103B1;0.605914!10076-102A4;0.950865!10073-102A1;0.909916!10036-101E9;0.746517!10195-103E6;0.846055!10277-104E7;0.970462!10434-106E2;0.876722!10550-107I1;0.135834!10545-107H5;0.453358!10544-107H4;0.482553!10704-109H2;0.773602!10510-107D6;0.122276!10558-107I9;0.0575294!10020-101D2;0.000117115!10732-110B3;0.651082!10049-101G4;0.608255!10698-109G5;0.501851!10437-106E5;0.620456!10417-106C3;0.133846!10035-101E8;0.911256!10171-103B9;0.855118!10157-103A4;0.867966!10034-101E7;0.909971!10072-101I9;0.897695!10199-103F1;0.726503!10200-103F2;0.208965!10697-109G4;0.284217!10723-110A3;0.514866!10179-103C8;0.435344!10160-103A7;0.558712!10180-103C9;0.510337!10162-103A9;0.738272!10021-101D3;0.725659!10840-111E3;0.386975!10706-109H4;0.615409!10033-101E6;0.636821!10032-101E5;0.758066!10490-107B4;0.890916!10439-106E7;0.739423!10022-101D4;0.550048!10176-103C5;0.504476!10469-106I1;0.830269!10067-101I4;0.879796!10411-106B6;0.588041!10471-106I3;0.729952!10030-101E3;0.908207!10475-106I7;0.537688!10787-110H4;0.00316706!10477-106I9;0.226746!10695-109G2;0.0121637!11771-123I7;0.621772!11772-123I8;0.135249!11773-123I9;0.0349344!10093-102C3;0.14138!10442-106F1;0.0494677!10442-106F1;0.446691!10201-103F3;0.296532!10639-108I9;0.558452!11843-124H7;0.0424046!11841-124H5;0.785297!10693-109F9;0.382888!10436-106E4;0.999043!10483-107A6;0.115135!10282-104F3;0.507093!10023-101D5;0.635583!10066-101I3;0.48299!10065-101I2;0.293993!10800-110I8;0.317419!10610-108F7;0.0424769!10841-111E4;0.177505!10541-107H1;0.00501395!10842-111E5;0.0761175!10562-108A4;0.000602222!10024-101D6;0.0895774!10064-101I1;0.427105!10609-108F6;0.407873!10048-101G3;0.0797816!10781-110G7;0.755647!10181-103D1;0.0194089!10159-103A6;0.867808!10056-101H2;0.809616!10737-110B8;0.837549!10025-101D7;0.770937!10044-101F8;0.172921!10424-106D1;0.291674!10463-106H4;0.176548!10616-108G4;0.143944!10486-107A9;0.775334!10062-101H8;0.310157!10202-103F4;0.311798!10158-103A5;0.0398349!10441-106E9;0.801421!10031-101E4;0.0230494!10063-101H9;0.98369!10063-101H9;0.892596!11763-123H8;0.428724!11765-123I1;0.74196!11768-123I4;0.959753!10807-111A6;0.925014!10790-110H7;0.0351407!10798-110I6;0.00689707!10786-110H3;0.304578!10591-108D6;0.286325!10593-108D8;0.00109754!10590-108D5;0.274632!10026-101D8;0.0250748!10096-102C6;0.382205!10168-103B6;0.758543!10154-103A1;0.947006!10209-103G2;0.877489!10061-101H7;0.110865!10027-101D9;0.264194!10043-101F7;0.277625!10783-110G9;0.874237!10028-101E1;0.826593!10060-101H6;0.0720322!10203-103F5;0.150926!10059-101H5;0.0723598!10047-101G2;0.170217!10029-101E2;0.0725845!10058-101H4;0.08298!10418-106C4;0.232286!10492-107B6;0.922302!10694-109G1;0.372469!10797-110I5;0.878112!10057-101H3;0.75544!10100-102D1;0.480457!10055-101H1;0.712178!10204-103F6;0.675536!10191-103E2;0.579507!10563-108A5;0.196493
|name=GCCGCAAAC,motif342,CNhs11958,T:1500.0(24.00%),B:13468.2(17.70%),P:1e-35
|name=GCCGCAAAC,motif342,CNhs11958,T:1500.0(24.00%),B:13468.2(17.70%),P:1e-35
|tomtom_result=FHL1#MA0295.1;0;0.00103536;0.49283;0.985661;8;GCCGCAAAC;GACGCAAA;+!E2F1#MA0024.1;0;0.00451472;2.14901;1;8;GCCGCAAAC;GCGCCAAA;-!TFAP2A#MA0003.1;0;0.00705045;3.35601;1;9;GCCGCAAAC;GCCCGGGGG;+!STP1#MA0394.1;2;0.00819426;3.90047;1;6;GCCGCAAAC;GCGCCGCA;-!ELK1#MA0028.1;2;0.0102135;4.8616;1;8;GCCGCAAAC;GAGCCGGAAG;+!RUNX1#MA0002.2;2;0.0104472;4.97286;1;9;GCCGCAAAC;AAACCACAGAC;-!run::Bgb#MA0242.1;2;0.0125072;5.95342;1;7;GCCGCAAAC;TAACCGCAA;+!STP2#MA0395.1;8;0.015808;7.52463;1;9;GCCGCAAAC;TGATCGGCGCCGCACGACGA;+!LEU3#MA0324.1;-1;0.0160535;7.64148;1;8;GCCGCAAAC;CCGGTAACGG;-!RREB1#MA0073.1;-1;0.0164224;7.81706;1;8;GCCGCAAAC;CCCCAAACCACCCCCCCCCC;+!Eip74EF#MA0026.1;-1;0.0190275;9.05711;1;7;GCCGCAAAC;CCGGAAG;+!RUNX1#MA0002.2;2;0.0208822;9.93995;1;9;GCCGCAAAC;TAACCACAATA;-
}}
}}

Latest revision as of 13:28, 7 September 2012

Full Name: GCCGCAAAC,motif342,CNhs11958,T:1500.0(24.00%),B:13468.2(17.70%),P:1e-35

Motif matrix
POACGT
1105166.51120.5108
243.51321.55184
3661206145.582.5
467.5249945238.5
540.51225.578156
61291.5517582.5
71216.560175.548
81126.5139.516866
91231056208.5112.5

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
FHL1#MA0295.100.001035360.492830.9856618GCCGCAAACGACGCAAA+
E2F1#MA0024.100.004514722.1490118GCCGCAAACGCGCCAAA-
TFAP2A#MA0003.100.007050453.3560119GCCGCAAACGCCCGGGGG+
STP1#MA0394.120.008194263.9004716GCCGCAAACGCGCCGCA-
ELK1#MA0028.120.01021354.861618GCCGCAAACGAGCCGGAAG+
RUNX1#MA0002.220.01044724.9728619GCCGCAAACAAACCACAGAC-
run::Bgb#MA0242.120.01250725.9534217GCCGCAAACTAACCGCAA+
STP2#MA0395.180.0158087.5246319GCCGCAAACTGATCGGCGCCGCACGACGA+
LEU3#MA0324.1-10.01605357.6414818GCCGCAAACCCGGTAACGG-
RREB1#MA0073.1-10.01642247.8170618GCCGCAAACCCCCAAACCACCCCCCCCCC+
Eip74EF#MA0026.1-10.01902759.0571117GCCGCAAACCCGGAAG+
RUNX1#MA0002.220.02088229.9399519GCCGCAAACTAACCACAATA-
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