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MacroAPE 1083:CGGCAGCGGA,motif385: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;246.33;1492.974;186.354;216.342!2;233.478;186.354;1469.412;252.756!3;177.786;194.922;1578.654;190.638!4;218.484;1505.826;205.632;212.058!5;1...")
 
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759!12177-128I8;0.141541!12182-129A4;0.272203!12183-129A5;0.261424!12184-129A6;0.469283!10809-111A8;0.126791!10597-108E3;0.800981!10717-109I6;0.0305262!10455-106G5;0.358075!10534-107G3;0.810781!10429-106D6;0.514972!10464-106H5;0.089302!10827-111C8;0.424896!10789-110H6;0.931367!10828-111C9;0.292883!10788-110H5;0.444027!10792-110H9;0.946465!10765-110E9;0.507736!10829-111D1;0.456633!10830-111D2;0.747377!10831-111D3;0.138143!10832-111D4;0.580838!10833-111D5;0.896876!10764-110E8;0.623104!10770-110F5;0.372559!10399-106A3;0.668367!10400-106A4;0.553474!10405-106A9;0.486643!10834-111D6;0.535898!10835-111D7;0.840663!10836-111D8;0.267269!10837-111D9;0.0815323!10699-109G6;0.750618!10802-111A1;0.0637885!10796-110I4;0.0262412!10010-101C1;0.844582!10810-111A9;0.223402!10421-106C7;0.187213!10708-109H6;0.866605!12235-129G3;0.869863!12236-129G4;0.521611!12237-129G5;0.00275276!10167-103B5;0.601369!10151-102I7;0.0147118!10428-106D5;0.00725494!10795-110I3;0.340342!10805-111A4;0.690543!10052-101G7;0.372585!10189-103D9;0.115667!10589-108D4;0.10319!10425-106D2;0.82182!10427-106D4;0.428945!10702-109G9;0.213639!10432-106D9;0.275687!10496-107C1;0.940691!10718-109I7;0.381232!10011-101C2;0.904287!10053-101G8;0.137495!10686-109F2;0.483339!10084-102B3;0.309928!10012-101C3;0.0169659!10085-102B4;0.0209239!10482-107A5;0.0315017!10419-106C5;0.178958!10080-102A8;0.167077!10760-110E4;0.253605!10709-109H7;0.289905!10710-109H8;0.815288!10703-109H1;0.493074!10719-109I8;0.978541!10642-109A3;0.348319!10177-103C6;0.248793!10164-103B2;0.0425209!10173-103C2;0.00313414!10166-103B4;0.0156843!10083-102B2;0.0101972!10188-103D8;0.0144476!10552-107I3;0.0355904!10553-107I4;0.970341!10013-101C4;0.761008!10536-107G5;0.117598!10618-108G6;0.0425743!10423-106C9;0.541991!10785-110H2;0.568001!12238-129G6;0.822834!12239-129G7;0.0390813!12240-129G8;0.0633534!10416-106C2;0.0177105!10801-110I9;0.868706!10766-110F1;0.730189!10824-111C5;0.898722!10825-111C6;0.733031!10826-111C7;0.668834!10454-106G4;0.41231!10409-106B4;0.346713!10638-108I8;0.568016!10636-108I6;0.765387!10513-107D9;0.470336!10420-106C6;0.878349!10082-102B1;0.113517!10014-101C5;0.0700605!10070-101I7;0.0411096!10452-106G2;0.0245498!10453-106G3;0.147771!10449-106F8;0.34218!10042-101F6;0.341139!10069-101I6;0.101384!10193-103E4;0.143786!10631-108I1;0.0112886!10438-106E6;0.417927!10488-107B2;0.469942!10196-103E7;0.820988!10071-101I8;0.532171!10071-101I8;0.048532!10041-101F5;0.0595677!10451-106G1;0.162413!10450-106F9;0.260311!10604-108F1;0.448063!10605-108F2;0.187001!10606-108F3;0.385968!10603-108E9;0.18365!10497-107C2;0.271028!10448-106F7;0.308779!10643-109A4;0.247787!10426-106D3;0.638255!10431-106D8;0.504999!10197-103E8;0.960442!10443-106F2;0.0654191!10815-111B5;0.26357!10816-111B6;0.914839!10817-111B7;0.769562!10015-101C6;0.982182!10410-106B5;0.0183985!10054-101G9;0.0574419!10758-110E2;0.135645!10711-109H9;0.113477!10040-101F4;0.53578!10470-106I2;0.00708451!10415-106C1;0.165164!10198-103E9;0.491556!10614-108G2;0.109856!10612-108F9;0.534084!10549-107H9;0.813724!10615-108G3;0.222396!10487-107B1;0.253307!10433-106E1;0.411235!10688-109F4;0.471893!10444-106F3;0.739832!10444-106F3;0.355381!10485-107A8;0.410453!10413-106B8;0.711698!10175-103C4;0.195549!10161-103A8;0.0673557!12131-128D7;0.0185048!10624-108H3;0.00827322!10712-109I1;0.214472!10205-103F7;0.506779!10206-103F8;0.496221!10207-103F9;0.612518!10050-101G5;0.677066!10051-101G6;0.01676!10016-101C7;0.286138!10046-101G1;0.733881!10778-110G4;0.519143!10633-108I3;0.512248!10818-111B8;0.0555921!10819-111B9;0.416815!10820-111C1;0.474291!10484-107A7;0.43492!10808-111A7;0.29562!10169-103B7;0.284366!10153-102I9;0.0203555!13425-144D5;0.0135908!13433-144E4;0.698292!13437-144E8;0.548851!11904-125F5;0.939971!11905-125F6;0.0262477!10039-101F3;0.0882717!10791-110H8;0.00684095!10017-101C8;0.649615!10045-101F9;0.0276205!10509-107D5;0.0546834!10839-111E2;0.146023!10692-109F8;0.864225!10079-102A7;0.877356!10078-102A6;0.16326!10721-110A1;0.159706!10569-108B2;0.161726!10570-108B3;0.229878!10571-108B4;0.200621!10647-109A8;0.152338!10752-110D5;0.0964333!10782-110G8;0.138295!10726-110A6;0.865588!10018-101C9;0.443499!10086-102B5;0.738363!10182-103D2;0.0589327!10165-103B3;0.0358281!10499-107C4;0.0284069!10408-106B3;0.392292!10019-101D1;0.915572!10068-101I5;0.0377593!10075-102A3;0.0961633!10077-102A5;0.0648929!10727-110A7;0.215378!10775-110G1;0.00662016!10412-106B7;0.284694!12231-129F8;0.450241!12232-129F9;0.063087!12233-129G1;0.357715!12234-129G2;0.252008!10414-106B9;0.0736328!10170-103B8;0.09751!10183-103D3;0.0182005!10150-102I6;0.0137703!10174-103C3;0.00592456!10155-103A2;0.996944!10038-101F2;0.208996!10838-111E1;0.301851!10759-110E3;0.133804!10514-107E1;0.366802!10465-106H6;0.289332!10691-109F7;0.623627!10843-111E6;0.5676!10844-111E7;0.404815!11747-123G1;0.575027!11748-123G2;0.0789479!11749-123G3;0.112932!11750-123G4;0.0243738!11751-123G5;0.0737851!11840-124H4;0.0749046!11752-123G6;0.0704329!11753-123G7;0.192407!11754-123G8;0.132072!11755-123G9;0.0675593!11756-123H1;0.0698852!11833-124G6;0.210681!11760-123H5;0.357479!11836-124G9;0.0839165!11758-123H3;0.300773!11835-124G8;0.197664!11762-123H7;0.0980906!11838-124H2;0.0398952!11757-123H2;0.109955!11759-123H4;0.01154!11761-123H6;0.181145!11842-124H6;0.0664852!11837-124H1;0.32172!10568-108B1;0.128493!13230-141I8;0.0495666!13231-141I9;0.0857914!10696-109G3;0.0522174!10493-107B7;0.0832022!10494-107B8;0.679411!10850-111F4;0.593403!10851-111F5;0.438923!10852-111F6;0.732909!10853-111F7;0.0661058!10854-111F8;0.27311!10855-111F9;0.408653!10856-111G1;0.0745771!10847-111F1;0.0609845!10846-111E9;0.517041!10848-111F2;0.512484!10845-111E8;0.265956!10857-111G2;0.559356!10858-111G3;0.439861!10156-103A3;0.0980592!11901-125F2;0.00496331!11902-125F3;0.14732!11903-125F4;0.0611356!10689-109F5;0.101049!10648-109A9;0.469689!10784-110H1;0.422905!10744-110C6;0.250362!10772-110F7;0.433552!10474-106I6;0.490181!10600-108E6;0.168715!10684-109E9;0.134827!12226-129F3;0.590346!12227-129F4;0.686813!10508-107D4;0.885887!10539-107G8;0.0155043!10607-108F4;0.144019!10555-107I6;0.135608!10774-110F9;0.130792!10637-108I7;0.759713!10663-109C6;0.254259!10728-110A8;0.481938!10729-110A9;0.117174!10430-106D7;0.758093!10730-110B1;0.0640079!10813-111B3;0.144957!10812-111B2;0.0962899!10037-101F1;0.169444!10172-103C1;0.00985585!10163-103B1;0.0199487!10076-102A4;0.00515302!10073-102A1;0.0134349!10036-101E9;0.0421984!10195-103E6;0.00890336!10277-104E7;0.0122554!10434-106E2;0.0062839!10550-107I1;0.272054!10545-107H5;0.976641!10544-107H4;0.523982!10704-109H2;0.886783!10510-107D6;0.181286!10558-107I9;0.298265!10020-101D2;0.902691!10732-110B3;0.206901!10049-101G4;0.980729!10698-109G5;0.99947!10437-106E5;0.187988!10417-106C3;0.170066!10035-101E8;0.370545!10171-103B9;0.0067709!10157-103A4;0.0158939!10034-101E7;0.00671756!10072-101I9;0.0057984!10199-103F1;0.0455564!10200-103F2;0.52733!10697-109G4;0.0949699!10723-110A3;0.903812!10179-103C8;0.847606!10160-103A7;0.0583303!10180-103C9;0.0361706!10162-103A9;0.264597!10021-101D3;0.105003!10840-111E3;0.022881!10706-109H4;0.37064!10033-101E6;0.449795!10032-101E5;0.0209711!10490-107B4;0.00657585!10439-106E7;0.696496!10022-101D4;0.861196!10176-103C5;0.0906357!10469-106I1;0.00147267!10067-101I4;0.783719!10411-106B6;0.12767!10471-106I3;0.254091!10030-101E3;0.0277812!10475-106I7;0.22576!10787-110H4;0.313713!10477-106I9;0.19223!10695-109G2;0.254375!11771-123I7;0.303225!11772-123I8;0.871219!11773-123I9;0.56999!10093-102C3;0.0736697!10442-106F1;0.118972!10442-106F1;0.881867!10201-103F3;0.960094!10639-108I9;0.41991!11843-124H7;0.688696!11841-124H5;0.718676!10693-109F9;0.952078!10436-106E4;0.420669!10483-107A6;0.591496!10282-104F3;0.607075!10023-101D5;0.74266!10066-101I3;0.382396!10065-101I2;0.0678556!10800-110I8;0.0107528!10610-108F7;0.40763!10841-111E4;0.450444!10541-107H1;0.280246!10842-111E5;0.155629!10562-108A4;0.105839!10024-101D6;0.961594!10064-101I1;0.0734578!10609-108F6;0.0103407!10048-101G3;0.379896!10781-110G7;0.87885!10181-103D1;0.0292361!10159-103A6;0.448691!10056-101H2;0.157662!10737-110B8;0.56237!10025-101D7;0.892591!10044-101F8;0.185373!10424-106D1;0.0874037!10463-106H4;0.244492!10616-108G4;0.456919!10486-107A9;0.224616!10062-101H8;0.359707!10202-103F4;0.302421!10158-103A5;0.143153!10441-106E9;0.0718222!10031-101E4;0.667669!10063-101H9;0.0101841!10063-101H9;0.0560287!11763-123H8;0.0364637!11765-123I1;0.114812!11768-123I4;0.0427521!10807-111A6;0.0507945!10790-110H7;0.0954221!10798-110I6;0.0455574!10786-110H3;0.441357!10591-108D6;0.298311!10593-108D8;0.28358!10590-108D5;0.297916!10026-101D8;0.52666!10096-102C6;0.0434778!10168-103B6;0.898257!10154-103A1;0.0695961!10209-103G2;0.0129764!10061-101H7;0.0283297!10027-101D9;0.051349!10043-101F7;0.132888!10783-110G9;0.730613!10028-101E1;0.488157!10060-101H6;0.115992!10203-103F5;0.168765!10059-101H5;0.0321768!10047-101G2;0.0361977!10029-101E2;0.0323364!10058-101H4;0.0113759!10418-106C4;0.0634214!10492-107B6;0.8236!10694-109G1;0.652785!10797-110I5;0.480718!10057-101H3;0.957843!10100-102D1;0.0126122!10055-101H1;0.304223!10204-103F6;0.0734138!10191-103E2;0.89463!10563-108A5;0.119493
|name=CGGCAGCGGA,motif385,CNhs10642,T:2142.0(62.47%),B:33256.4(52.02%),P:1e-34
|name=CGGCAGCGGA,motif385,CNhs10642,T:2142.0(62.47%),B:33256.4(52.02%),P:1e-34
|tomtom_result=LEU3#MA0324.1;1;0.000693098;0.329915;0.658093;9;CGGCAGCGGA;CCGTTACCGG;+!GABPA#MA0062.2;1;0.00138912;0.661223;0.659483;10;CGGCAGCGGA;CCGGAAGTGGC;+!IXR1#MA0323.1;4;0.00236865;1.12748;0.738347;10;CGGCAGCGGA;AAGCCGGAAGCGGGG;+!abi4#MA0123.1;2;0.00495556;2.35885;0.738347;8;CGGCAGCGGA;GGGGGCACCG;-!Mafb#MA0117.1;1;0.00638627;3.03986;0.738347;7;CGGCAGCGGA;GCGTCAGC;-!Myf#MA0055.1;0;0.00652191;3.10443;0.738347;10;CGGCAGCGGA;CAGCAGCTGCTG;+!PDR1#MA0352.1;-2;0.00663457;3.15805;0.738347;8;CGGCAGCGGA;TCCGCGGA;+!Pax5#MA0014.1;6;0.0083503;3.97474;0.738347;10;CGGCAGCGGA;GGAGCACTGAAGCGTAACCG;+!RDS1#MA0361.1;0;0.00846449;4.0291;0.738347;7;CGGCAGCGGA;CGGCCGA;+!STP4#MA0397.1;-1;0.00921851;4.38801;0.738347;9;CGGCAGCGGA;GATAGCGCA;+!btd#MA0443.1;0;0.00933146;4.44177;0.738347;10;CGGCAGCGGA;AGGGGGCGGA;+!STP3#MA0396.1;-1;0.0117412;5.58879;0.826419;9;CGGCAGCGGA;GCTAGCGCA;+!id1#MA0120.1;0;0.0151538;7.21319;0.911687;10;CGGCAGCGGA;CGAAAAGGAAAA;-!STP1#MA0394.1;-1;0.0158252;7.53277;0.911687;8;CGGCAGCGGA;TGCGGCGC;+!YLL054C#MA0429.1;0;0.0166552;7.92787;0.911687;7;CGGCAGCGGA;CGGCCGA;+!SPIB#MA0081.1;-4;0.0172915;8.23074;0.911687;6;CGGCAGCGGA;AGAGGAA;+!Zfx#MA0146.1;1;0.0205976;9.80446;0.911687;10;CGGCAGCGGA;GGGGCCGAGGCCTG;+
}}
}}

Latest revision as of 13:31, 7 September 2012

Full Name: CGGCAGCGGA,motif385,CNhs10642,T:2142.0(62.47%),B:33256.4(52.02%),P:1e-34

Motif matrix
POACGT
1246.331492.974186.354216.342
2233.478186.3541469.412252.756
3177.786194.9221578.654190.638
4218.4841505.826205.632212.058
51362.312231.336317.016231.336
6182.07244.1881544.382171.36
7205.6321597.932162.792175.644
8203.49218.4841452.276267.75
9203.49233.4781518.678186.354
101467.27310.59201.348162.792

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
LEU3#MA0324.110.0006930980.3299150.6580939CGGCAGCGGACCGTTACCGG+
GABPA#MA0062.210.001389120.6612230.65948310CGGCAGCGGACCGGAAGTGGC+
IXR1#MA0323.140.002368651.127480.73834710CGGCAGCGGAAAGCCGGAAGCGGGG+
abi4#MA0123.120.004955562.358850.7383478CGGCAGCGGAGGGGGCACCG-
Mafb#MA0117.110.006386273.039860.7383477CGGCAGCGGAGCGTCAGC-
Myf#MA0055.100.006521913.104430.73834710CGGCAGCGGACAGCAGCTGCTG+
PDR1#MA0352.1-20.006634573.158050.7383478CGGCAGCGGATCCGCGGA+
Pax5#MA0014.160.00835033.974740.73834710CGGCAGCGGAGGAGCACTGAAGCGTAACCG+
RDS1#MA0361.100.008464494.02910.7383477CGGCAGCGGACGGCCGA+
STP4#MA0397.1-10.009218514.388010.7383479CGGCAGCGGAGATAGCGCA+
btd#MA0443.100.009331464.441770.73834710CGGCAGCGGAAGGGGGCGGA+
STP3#MA0396.1-10.01174125.588790.8264199CGGCAGCGGAGCTAGCGCA+
id1#MA0120.100.01515387.213190.91168710CGGCAGCGGACGAAAAGGAAAA-
STP1#MA0394.1-10.01582527.532770.9116878CGGCAGCGGATGCGGCGC+
YLL054C#MA0429.100.01665527.927870.9116877CGGCAGCGGACGGCCGA+
SPIB#MA0081.1-40.01729158.230740.9116876CGGCAGCGGAAGAGGAA+
Zfx#MA0146.110.02059769.804460.91168710CGGCAGCGGAGGGGCCGAGGCCTG+
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