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MacroAPE 1083:4-TTTAAAGCGG: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;162.725;134.425;138.67;979.18!2;130.18;120.275;120.275;1044.27!3;166.97;128.765;142.915;976.35!4;1008.895;118.86;137.255;149.99!5;991.915;13...")
 
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632!10464-106H5;0.704137!10827-111C8;0.877876!10789-110H6;0.443761!10828-111C9;0.216384!10788-110H5;0.168675!10792-110H9;0.194228!10765-110E9;0.408963!10829-111D1;0.852677!10830-111D2;0.111162!10831-111D3;0.0854916!10832-111D4;0.565689!10833-111D5;0.426827!10764-110E8;0.97098!10770-110F5;0.42205!10399-106A3;0.580952!10400-106A4;0.588866!10405-106A9;0.61917!10834-111D6;0.708406!10835-111D7;0.821714!10836-111D8;0.834741!10837-111D9;0.910436!10699-109G6;0.244861!10802-111A1;0.909175!10796-110I4;0.570635!10010-101C1;0.392082!10810-111A9;0.744583!10421-106C7;0.417443!10708-109H6;0.616955!12235-129G3;0.596121!12236-129G4;0.313631!12237-129G5;0.218245!10167-103B5;0.100197!10151-102I7;0.522303!10428-106D5;0.63415!10795-110I3;0.362974!10805-111A4;0.557174!10052-101G7;0.00788158!10189-103D9;0.625559!10589-108D4;0.459716!10425-106D2;0.522825!10427-106D4;0.800825!10702-109G9;0.652579!10432-106D9;0.262012!10496-107C1;0.296296!10718-109I7;0.60485!10011-101C2;0.833011!10053-101G8;0.958123!10686-109F2;0.802418!10084-102B3;0.599211!10012-101C3;0.836103!10085-102B4;0.450918!10482-107A5;0.479101!10419-106C5;0.59907!10080-102A8;0.237437!10760-110E4;0.0591116!10709-109H7;0.439106!10710-109H8;0.00491091!10703-109H1;0.542697!10719-109I8;0.879409!10642-109A3;0.0685012!10177-103C6;0.144142!10164-103B2;0.523424!10173-103C2;0.613845!10166-103B4;0.556196!10083-102B2;0.506272!10188-103D8;0.781069!10552-107I3;0.743584!10553-107I4;0.420908!10013-101C4;0.00493029!10536-107G5;0.562421!10618-108G6;0.614963!10423-106C9;0.0591304!10785-110H2;0.0503111!12238-129G6;0.0281753!12239-129G7;0.810575!12240-129G8;0.538338!10416-106C2;0.839176!10801-110I9;0.4762!10766-110F1;0.680968!10824-111C5;0.400281!10825-111C6;0.58292!10826-111C7;0.894926!10454-106G4;0.939673!10409-106B4;0.424959!10638-108I8;0.851109!10636-108I6;0.815564!10513-107D9;0.564103!10420-106C6;0.0733791!10082-102B1;0.502729!10014-101C5;0.241577!10070-101I7;0.844585!10452-106G2;0.463846!10453-106G3;0.0907722!10449-106F8;0.14221!10042-101F6;0.322604!10069-101I6;0.447344!10193-103E4;0.283442!10631-108I1;0.556767!10438-106E6;0.537396!10488-107B2;0.555021!10196-103E7;0.992698!10071-101I8;0.672491!10071-101I8;0.65571!10041-101F5;0.953478!10451-106G1;0.793502!10450-106F9;0.323014!10604-108F1;0.26024!10605-108F2;0.151448!10606-108F3;0.323096!10603-108E9;0.239055!10497-107C2;0.940762!10448-106F7;0.567023!10643-109A4;0.990998!10426-106D3;0.695152!10431-106D8;0.178546!10197-103E8;0.0288989!10443-106F2;0.970848!10815-111B5;0.307026!10816-111B6;0.420682!10817-111B7;0.370579!10015-101C6;0.452993!10410-106B5;0.856283!10054-101G9;0.002709!10758-110E2;0.641349!10711-109H9;0.451672!10040-101F4;0.848898!10470-106I2;0.382287!10415-106C1;0.0814752!10198-103E9;0.858533!10614-108G2;0.662434!10612-108F9;0.169976!10549-107H9;0.164922!10615-108G3;0.259396!10487-107B1;0.0301459!10433-106E1;0.918834!10688-109F4;0.213416!10444-106F3;0.382479!10444-106F3;0.183397!10485-107A8;0.174209!10413-106B8;0.291238!10175-103C4;0.437394!10161-103A8;0.658569!12131-128D7;0.537538!10624-108H3;0.587318!10712-109I1;0.0538154!10205-103F7;0.456937!10206-103F8;0.939513!10207-103F9;0.724978!10050-101G5;0.150732!10051-101G6;0.152528!10016-101C7;0.859283!10046-101G1;0.935914!10778-110G4;0.672456!10633-108I3;0.901704!10818-111B8;0.00799987!10819-111B9;0.0658156!10820-111C1;0.104395!10484-107A7;0.0826759!10808-111A7;0.485839!10169-103B7;0.508185!10153-102I9;0.661837!13425-144D5;0.634373!13433-144E4;0.038549!13437-144E8;0.114412!11904-125F5;0.274737!11905-125F6;0.987741!10039-101F3;0.156935!10791-110H8;0.504991!10017-101C8;0.498227!10045-101F9;0.391097!10509-107D5;0.603359!10839-111E2;0.488354!10692-109F8;0.00914499!10079-102A7;0.189226!10078-102A6;0.705877!10721-110A1;0.796354!10569-108B2;0.363128!10570-108B3;0.573096!10571-108B4;0.446631!10647-109A8;0.816387!10752-110D5;0.418158!10782-110G8;0.547073!10726-110A6;0.668056!10018-101C9;0.0789881!10086-102B5;0.924742!10182-103D2;0.00109795!10165-103B3;0.728497!10499-107C4;0.472817!10408-106B3;0.617643!10019-101D1;0.200849!10068-101I5;0.581019!10075-102A3;0.785274!10077-102A5;0.410157!10727-110A7;0.839137!10775-110G1;0.904378!10412-106B7;0.233909!12231-129F8;0.554643!12232-129F9;0.0704604!12233-129G1;0.171042!12234-129G2;0.23421!10414-106B9;0.648373!10170-103B8;0.533169!10183-103D3;0.585434!10150-102I6;0.452891!10174-103C3;0.548658!10155-103A2;0.555376!10038-101F2;0.550115!10838-111E1;0.545787!10759-110E3;0.143023!10514-107E1;0.119136!10465-106H6;0.865668!10691-109F7;0.765016!10843-111E6;0.262766!10844-111E7;0.455385!11747-123G1;0.106142!11748-123G2;0.284085!11749-123G3;0.386756!11750-123G4;0.301486!11751-123G5;0.824988!11840-124H4;0.586886!11752-123G6;0.349223!11753-123G7;0.480486!11754-123G8;0.914587!11755-123G9;0.308506!11756-123H1;0.509139!11833-124G6;0.750313!11760-123H5;0.265242!11836-124G9;0.815456!11758-123H3;0.0922107!11835-124G8;0.351878!11762-123H7;0.654681!11838-124H2;0.891131!11757-123H2;0.557631!11759-123H4;0.120806!11761-123H6;0.867796!11842-124H6;0.711716!11837-124H1;0.989535!10568-108B1;0.543289!13230-141I8;0.700451!13231-141I9;0.201454!10696-109G3;0.360101!10493-107B7;0.800798!10494-107B8;0.688121!10850-111F4;0.764604!10851-111F5;0.145274!10852-111F6;0.659406!10853-111F7;0.647063!10854-111F8;0.108593!10855-111F9;0.34654!10856-111G1;0.835823!10847-111F1;0.303936!10846-111E9;0.364492!10848-111F2;0.856921!10845-111E8;0.288943!10857-111G2;0.834272!10858-111G3;0.851281!10156-103A3;0.266368!11901-125F2;0.654771!11902-125F3;0.402834!11903-125F4;0.382056!10689-109F5;0.0953666!10648-109A9;0.285043!10784-110H1;0.0819084!10744-110C6;0.124077!10772-110F7;0.283009!10474-106I6;0.78764!10600-108E6;0.0312053!10684-109E9;0.5465!12226-129F3;0.960097!12227-129F4;0.690973!10508-107D4;0.521696!10539-107G8;0.750668!10607-108F4;0.110449!10555-107I6;0.598606!10774-110F9;0.564882!10637-108I7;0.564695!10663-109C6;0.803578!10728-110A8;0.0742446!10729-110A9;0.110164!10430-106D7;0.68384!10730-110B1;0.769178!10813-111B3;0.94668!10812-111B2;0.662965!10037-101F1;0.587341!10172-103C1;0.511368!10163-103B1;0.562816!10076-102A4;0.672552!10073-102A1;0.764869!10036-101E9;0.836567!10195-103E6;0.831338!10277-104E7;0.475854!10434-106E2;0.731186!10550-107I1;0.419734!10545-107H5;0.224764!10544-107H4;0.613811!10704-109H2;0.279222!10510-107D6;0.345718!10558-107I9;0.0733701!10020-101D2;0.355163!10732-110B3;0.729671!10049-101G4;0.00739916!10698-109G5;0.552216!10437-106E5;0.0502314!10417-106C3;0.308265!10035-101E8;0.847277!10171-103B9;0.542418!10157-103A4;0.555067!10034-101E7;0.609063!10072-101I9;0.524023!10199-103F1;0.96591!10200-103F2;0.411195!10697-109G4;0.651103!10723-110A3;0.776524!10179-103C8;0.106551!10160-103A7;0.91467!10180-103C9;0.392427!10162-103A9;0.259449!10021-101D3;0.19886!10840-111E3;0.90873!10706-109H4;0.362231!10033-101E6;0.491234!10032-101E5;0.376909!10490-107B4;0.682453!10439-106E7;0.0354795!10022-101D4;0.0849879!10176-103C5;0.75562!10469-106I1;0.537693!10067-101I4;0.757174!10411-106B6;0.504698!10471-106I3;0.299796!10030-101E3;0.0775866!10475-106I7;0.432518!10787-110H4;0.187321!10477-106I9;0.715542!10695-109G2;0.36361!11771-123I7;0.743235!11772-123I8;0.969596!11773-123I9;0.545263!10093-102C3;0.306147!10442-106F1;0.0962215!10442-106F1;0.370017!10201-103F3;0.256595!10639-108I9;0.917302!11843-124H7;0.331565!11841-124H5;0.210663!10693-109F9;0.496289!10436-106E4;0.200109!10483-107A6;0.907847!10282-104F3;0.61964!10023-101D5;0.74879!10066-101I3;0.42682!10065-101I2;0.221057!10800-110I8;0.668878!10610-108F7;0.0199546!10841-111E4;0.0129635!10541-107H1;0.665531!10842-111E5;0.20638!10562-108A4;0.490083!10024-101D6;0.308688!10064-101I1;0.880276!10609-108F6;0.927783!10048-101G3;0.361159!10781-110G7;0.958459!10181-103D1;0.857994!10159-103A6;0.599229!10056-101H2;0.262167!10737-110B8;0.949663!10025-101D7;0.872602!10044-101F8;0.832326!10424-106D1;0.138655!10463-106H4;0.507751!10616-108G4;0.875248!10486-107A9;0.698695!10062-101H8;0.190574!10202-103F4;0.536421!10158-103A5;0.484235!10441-106E9;0.485375!10031-101E4;0.145815!10063-101H9;0.785669!10063-101H9;0.964072!11763-123H8;0.676654!11765-123I1;0.562565!11768-123I4;0.761313!10807-111A6;0.780445!10790-110H7;0.159526!10798-110I6;0.509256!10786-110H3;0.00544133!10591-108D6;0.0439149!10593-108D8;0.229637!10590-108D5;0.782909!10026-101D8;0.123744!10096-102C6;0.975258!10168-103B6;0.916659!10154-103A1;0.382495!10209-103G2;0.569465!10061-101H7;0.308021!10027-101D9;0.141117!10043-101F7;0.556689!10783-110G9;0.0636481!10028-101E1;0.0135616!10060-101H6;0.350567!10203-103F5;0.0476632!10059-101H5;0.350949!10047-101G2;0.24348!10029-101E2;0.311507!10058-101H4;0.468143!10418-106C4;0.22308!10492-107B6;0.0398285!10694-109G1;0.0313303!10797-110I5;0.489494!10057-101H3;0.397471!10100-102D1;0.339481!10055-101H1;0.37723!10204-103F6;0.92137!10191-103E2;0.231057!10563-108A5;0.0985173
|name=4-TTTAAAGCGG,CNhs10647,BestGuess:NANOG_f1_HM09(0.621152689555457),T:1415.0(35.52%),B:11215.6(25.42%),P:1e-44
|name=4-TTTAAAGCGG,CNhs10647,BestGuess:NANOG_f1_HM09(0.621152689555457),T:1415.0(35.52%),B:11215.6(25.42%),P:1e-44
|tomtom_result=MNB1A#MA0053.1;-3;0.00177031;0.842669;0.70533;5;TTTAAAGCGG;AAAGC;+!Dof3#MA0021.1;-3;0.00177848;0.846558;0.70533;6;TTTAAAGCGG;AAAGCG;+!PBF#MA0064.1;-3;0.00222324;1.05826;0.70533;5;TTTAAAGCGG;AAAGC;+!ceh-22#MA0264.1;0;0.00409687;1.95011;0.793583;10;TTTAAAGCGG;TTTCAAGTGGT;-!Dof2#MA0020.1;-3;0.00416904;1.98446;0.793583;6;TTTAAAGCGG;AAAGCA;+!Tcfcp2l1#MA0145.1;4;0.00828867;3.94541;0.999747;10;TTTAAAGCGG;CCAGTTCAAACCAG;+!YGR067C#MA0425.1;1;0.0129778;6.17742;0.999747;10;TTTAAAGCGG;TGAAAAAGTGGGGT;-
}}
}}

Latest revision as of 13:32, 7 September 2012

Full Name: 4-TTTAAAGCGG,CNhs10647,BestGuess:NANOG_f1_HM09(0.621152689555457),T:1415.0(35.52%),B:11215.6(25.42%),P:1e-44

Motif matrix
POACGT
1162.725134.425138.67979.18
2130.18120.275120.2751044.27
3166.97128.765142.915976.35
41008.895118.86137.255149.99
5991.915135.84140.085147.16
6976.35155.65142.915140.085
7128.765148.575998.99138.67
8114.6151049.93152.8297.635
9185.365179.705905.6144.33
10166.97149.99977.765120.275

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
MNB1A#MA0053.1-30.001770310.8426690.705335TTTAAAGCGGAAAGC+
Dof3#MA0021.1-30.001778480.8465580.705336TTTAAAGCGGAAAGCG+
PBF#MA0064.1-30.002223241.058260.705335TTTAAAGCGGAAAGC+
ceh-22#MA0264.100.004096871.950110.79358310TTTAAAGCGGTTTCAAGTGGT-
Dof2#MA0020.1-30.004169041.984460.7935836TTTAAAGCGGAAAGCA+
Tcfcp2l1#MA0145.140.008288673.945410.99974710TTTAAAGCGGCCAGTTCAAACCAG+
YGR067C#MA0425.110.01297786.177420.99974710TTTAAAGCGGTGAAAAAGTGGGGT-
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