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MacroAPE 1083:CCGTCTYT,motif741: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;1.492;936.976;552.04;1.492!2;1.492;950.404;340.176;199.928!3;1.492;1.492;1201.06;287.956!4;1.492;1.492;214.848;1274.168!5;37.3;1110.048;135....")
 
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7336!10788-110H5;0.218228!10792-110H9;0.842558!10765-110E9;0.543915!10829-111D1;0.803971!10830-111D2;0.236672!10831-111D3;0.335493!10832-111D4;0.162578!10833-111D5;0.498921!10764-110E8;0.587076!10770-110F5;0.507476!10399-106A3;0.303472!10400-106A4;0.472782!10405-106A9;0.486017!10834-111D6;0.512446!10835-111D7;0.328269!10836-111D8;0.586723!10837-111D9;0.360803!10699-109G6;0.657416!10802-111A1;0.830545!10796-110I4;0.991255!10010-101C1;0.821186!10810-111A9;0.341517!10421-106C7;0.909145!10708-109H6;0.650099!12235-129G3;0.772028!12236-129G4;0.0924204!12237-129G5;0.358714!10167-103B5;0.0664246!10151-102I7;0.269442!10428-106D5;0.322123!10795-110I3;0.759213!10805-111A4;0.210337!10052-101G7;0.556252!10189-103D9;0.578812!10589-108D4;0.794488!10425-106D2;0.944519!10427-106D4;0.55089!10702-109G9;0.678053!10432-106D9;0.773397!10496-107C1;0.608757!10718-109I7;0.89234!10011-101C2;0.608029!10053-101G8;0.659672!10686-109F2;0.556153!10084-102B3;0.56236!10012-101C3;0.381111!10085-102B4;0.350965!10482-107A5;0.315695!10419-106C5;0.715909!10080-102A8;0.398333!10760-110E4;0.0804914!10709-109H7;0.632418!10710-109H8;0.901763!10703-109H1;0.79547!10719-109I8;0.399085!10642-109A3;0.536514!10177-103C6;0.48729!10164-103B2;0.350754!10173-103C2;0.28707!10166-103B4;0.355765!10083-102B2;0.382585!10188-103D8;0.345119!10552-107I3;0.343241!10553-107I4;0.426928!10013-101C4;0.865677!10536-107G5;0.507979!10618-108G6;0.00765341!10423-106C9;0.262022!10785-110H2;0.42551!12238-129G6;0.379122!12239-129G7;0.816978!12240-129G8;0.929712!10416-106C2;0.795645!10801-110I9;0.160738!10766-110F1;0.688426!10824-111C5;0.692812!10825-111C6;0.747574!10826-111C7;0.826281!10454-106G4;0.722305!10409-106B4;0.588465!10638-108I8;0.722705!10636-108I6;0.446966!10513-107D9;0.308596!10420-106C6;0.670514!10082-102B1;0.716001!10014-101C5;0.644548!10070-101I7;0.683486!10452-106G2;0.540738!10453-106G3;0.946089!10449-106F8;0.821392!10042-101F6;0.873689!10069-101I6;0.369551!10193-103E4;0.246236!10631-108I1;0.335807!10438-106E6;0.235111!10488-107B2;0.660667!10196-103E7;0.722082!10071-101I8;0.385226!10071-101I8;0.684524!10041-101F5;0.364424!10451-106G1;0.878049!10450-106F9;0.898536!10604-108F1;0.827326!10605-108F2;0.593121!10606-108F3;0.562928!10603-108E9;0.741366!10497-107C2;0.746697!10448-106F7;0.352456!10643-109A4;0.616241!10426-106D3;0.348758!10431-106D8;0.989885!10197-103E8;0.462661!10443-106F2;0.579088!10815-111B5;0.690592!10816-111B6;0.741161!10817-111B7;0.799609!10015-101C6;0.739867!10410-106B5;0.800048!10054-101G9;0.517903!10758-110E2;0.443433!10711-109H9;0.217637!10040-101F4;0.530161!10470-106I2;0.325025!10415-106C1;0.924288!10198-103E9;0.259579!10614-108G2;0.811272!10612-108F9;0.856703!10549-107H9;0.908568!10615-108G3;0.48721!10487-107B1;0.822218!10433-106E1;0.558129!10688-109F4;0.993991!10444-106F3;0.856857!10444-106F3;0.928993!10485-107A8;0.918147!10413-106B8;0.520908!10175-103C4;0.956076!10161-103A8;0.379526!12131-128D7;0.353355!10624-108H3;0.988802!10712-109I1;0.733551!10205-103F7;0.858251!10206-103F8;0.31254!10207-103F9;0.261425!10050-101G5;0.344625!10051-101G6;0.475615!10016-101C7;0.511379!10046-101G1;0.522104!10778-110G4;0.296501!10633-108I3;0.930897!10818-111B8;0.83457!10819-111B9;0.619087!10820-111C1;0.618737!10484-107A7;0.685217!10808-111A7;0.970296!10169-103B7;0.260059!10153-102I9;0.265076!13425-144D5;0.30948!13433-144E4;0.429887!13437-144E8;0.363775!11904-125F5;0.361961!11905-125F6;0.743415!10039-101F3;0.997668!10791-110H8;0.335568!10017-101C8;0.902446!10045-101F9;0.827513!10509-107D5;0.480471!10839-111E2;0.483779!10692-109F8;0.223026!10079-102A7;0.505001!10078-102A6;0.564142!10721-110A1;0.602274!10569-108B2;0.790106!10570-108B3;0.985554!10571-108B4;0.928691!10647-109A8;0.882114!10752-110D5;0.294936!10782-110G8;0.340713!10726-110A6;0.888041!10018-101C9;0.901453!10086-102B5;0.912862!10182-103D2;0.441799!10165-103B3;0.351661!10499-107C4;0.326654!10408-106B3;0.53095!10019-101D1;0.625608!10068-101I5;0.798901!10075-102A3;0.487302!10077-102A5;0.689749!10727-110A7;0.478677!10775-110G1;0.659876!10412-106B7;0.344637!12231-129F8;0.959002!12232-129F9;0.0121725!12233-129G1;0.0417414!12234-129G2;0.0383046!10414-106B9;0.0135184!10170-103B8;0.346046!10183-103D3;0.360859!10150-102I6;0.377862!10174-103C3;0.350957!10155-103A2;0.297951!10038-101F2;0.305984!10838-111E1;0.365283!10759-110E3;0.400415!10514-107E1;0.787492!10465-106H6;0.382849!10691-109F7;0.512746!10843-111E6;0.904037!10844-111E7;0.51052!11747-123G1;0.507849!11748-123G2;0.799815!11749-123G3;0.74414!11750-123G4;0.342592!11751-123G5;0.907719!11840-124H4;0.940011!11752-123G6;0.818002!11753-123G7;0.600366!11754-123G8;0.859265!11755-123G9;0.285463!11756-123H1;0.126251!11833-124G6;0.740145!11760-123H5;0.954163!11836-124G9;0.906531!11758-123H3;0.90678!11835-124G8;0.834427!11762-123H7;0.965515!11838-124H2;0.591361!11757-123H2;0.857426!11759-123H4;0.590844!11761-123H6;0.701916!11842-124H6;0.890043!11837-124H1;0.960444!10568-108B1;0.717577!13230-141I8;0.72102!13231-141I9;0.694157!10696-109G3;0.958662!10493-107B7;0.0127196!10494-107B8;0.420082!10850-111F4;0.988866!10851-111F5;0.39317!10852-111F6;0.85344!10853-111F7;0.41087!10854-111F8;0.172532!10855-111F9;0.455783!10856-111G1;0.707509!10847-111F1;0.379!10846-111E9;0.734652!10848-111F2;0.694579!10845-111E8;0.825906!10857-111G2;0.537696!10858-111G3;0.433556!10156-103A3;0.319873!11901-125F2;0.348991!11902-125F3;0.863751!11903-125F4;0.851167!10689-109F5;0.911244!10648-109A9;0.788662!10784-110H1;0.167951!10744-110C6;0.33372!10772-110F7;0.497085!10474-106I6;0.904661!10600-108E6;0.156957!10684-109E9;0.686014!12226-129F3;0.58971!12227-129F4;0.645098!10508-107D4;0.835163!10539-107G8;0.263188!10607-108F4;0.436693!10555-107I6;0.794478!10774-110F9;0.387262!10637-108I7;0.574713!10663-109C6;0.518727!10728-110A8;0.699343!10729-110A9;0.665068!10430-106D7;0.780467!10730-110B1;0.8437!10813-111B3;0.43647!10812-111B2;0.708725!10037-101F1;0.812601!10172-103C1;0.308623!10163-103B1;0.332829!10076-102A4;0.362392!10073-102A1;0.336782!10036-101E9;0.289393!10195-103E6;0.347574!10277-104E7;0.351853!10434-106E2;0.158078!10550-107I1;0.773759!10545-107H5;0.754702!10544-107H4;0.762126!10704-109H2;0.614397!10510-107D6;0.491376!10558-107I9;0.68203!10020-101D2;0.461148!10732-110B3;0.560047!10049-101G4;0.36168!10698-109G5;0.712273!10437-106E5;0.515666!10417-106C3;0.471166!10035-101E8;0.998608!10171-103B9;0.313474!10157-103A4;0.361814!10034-101E7;0.356784!10072-101I9;0.329778!10199-103F1;0.304517!10200-103F2;0.390809!10697-109G4;0.663789!10723-110A3;0.990785!10179-103C8;0.634332!10160-103A7;0.338587!10180-103C9;0.306332!10162-103A9;0.280858!10021-101D3;0.230354!10840-111E3;0.298769!10706-109H4;0.74576!10033-101E6;0.898732!10032-101E5;0.316773!10490-107B4;0.333318!10439-106E7;0.904454!10022-101D4;0.93842!10176-103C5;0.595162!10469-106I1;0.292191!10067-101I4;0.72228!10411-106B6;0.422952!10471-106I3;0.920746!10030-101E3;0.785126!10475-106I7;0.303886!10787-110H4;0.424973!10477-106I9;0.385565!10695-109G2;0.841846!11771-123I7;0.789201!11772-123I8;0.962064!11773-123I9;0.758208!10093-102C3;0.528373!10442-106F1;0.440026!10442-106F1;0.195378!10201-103F3;0.209293!10639-108I9;0.658844!11843-124H7;0.315564!11841-124H5;0.258926!10693-109F9;0.549284!10436-106E4;0.582293!10483-107A6;0.426841!10282-104F3;0.701533!10023-101D5;0.708105!10066-101I3;0.589682!10065-101I2;0.611846!10800-110I8;0.420453!10610-108F7;0.7534!10841-111E4;0.523645!10541-107H1;0.363474!10842-111E5;0.865347!10562-108A4;0.50143!10024-101D6;0.805924!10064-101I1;0.618388!10609-108F6;0.575413!10048-101G3;0.44031!10781-110G7;0.580805!10181-103D1;0.815916!10159-103A6;0.408915!10056-101H2;0.379284!10737-110B8;0.353048!10025-101D7;0.908743!10044-101F8;0.277793!10424-106D1;0.580901!10463-106H4;0.616332!10616-108G4;0.624883!10486-107A9;0.568172!10062-101H8;0.69816!10202-103F4;0.483806!10158-103A5;0.524075!10441-106E9;0.349739!10031-101E4;0.696462!10063-101H9;0.364037!10063-101H9;0.313639!11763-123H8;0.679143!11765-123I1;0.489721!11768-123I4;0.916442!10807-111A6;0.784446!10790-110H7;0.704682!10798-110I6;0.640622!10786-110H3;0.828392!10591-108D6;0.981052!10593-108D8;0.567193!10590-108D5;0.590672!10026-101D8;0.629401!10096-102C6;0.618453!10168-103B6;0.585885!10154-103A1;0.32871!10209-103G2;0.348244!10061-101H7;0.707803!10027-101D9;0.169936!10043-101F7;0.437574!10783-110G9;0.82633!10028-101E1;0.408423!10060-101H6;0.0311186!10203-103F5;0.0278508!10059-101H5;0.83795!10047-101G2;0.540655!10029-101E2;0.925084!10058-101H4;0.927709!10418-106C4;0.282043!10492-107B6;0.936942!10694-109G1;0.539477!10797-110I5;0.716436!10057-101H3;0.520711!10100-102D1;0.447286!10055-101H1;0.639465!10204-103F6;0.403586!10191-103E2;0.252617!10563-108A5;0.865844
|name=CCGTCTYT,motif741,CNhs11764,T:1492.0(34.06%),B:18133.9(26.39%),P:1e-28
|name=CCGTCTYT,motif741,CNhs11764,T:1492.0(34.06%),B:18133.9(26.39%),P:1e-28
|tomtom_result=NDT80#MA0343.1;2;0.00544583;2.59221;1;8;CCGTCTTT;TTGCGTTTTTGTGGCCGGAAA;-!ARG80#MA0271.1;0;0.0107963;5.13902;1;6;CCGTCTTT;GCGTCT;-!Klf4#MA0039.1;0;0.0156467;7.44781;1;8;CCGTCTTT;CCTTCCTTTA;-!HMG-I/Y#MA0045.1;6;0.0196528;9.35472;1;8;CCGTCTTT;GTTTTTCCATTTGTTG;-
}}
}}

Latest revision as of 13:36, 7 September 2012

Full Name: CCGTCTYT,motif741,CNhs11764,T:1492.0(34.06%),B:18133.9(26.39%),P:1e-28

Motif matrix
POACGT
11.492936.976552.041.492
21.492950.404340.176199.928
31.4921.4921201.06287.956
41.4921.492214.8481274.168
537.31110.048135.772208.88
61.4921.4921.4921487.524
722.38540.104256.624672.892
81.4921.49274.61414.416

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
NDT80#MA0343.120.005445832.5922118CCGTCTTTTTGCGTTTTTGTGGCCGGAAA-
ARG80#MA0271.100.01079635.1390216CCGTCTTTGCGTCT-
Klf4#MA0039.100.01564677.4478118CCGTCTTTCCTTCCTTTA-
HMG-I/Y#MA0045.160.01965289.3547218CCGTCTTTGTTTTTCCATTTGTTG-
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