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MacroAPE 1083:NR6A1 do: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;38.69444444444445;3.472222222222225;5.3611111111111;2.472222222222225!2;47.0;1.0;1.0;1.0!3;2.0;0.0;46.8888888888889;1.1111111111111098!4;0.0...")
 
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0429-106D6;0.245949!10464-106H5;0.646537!10827-111C8;0.261269!10789-110H6;0.525815!10828-111C9;0.527664!10788-110H5;0.198674!10792-110H9;0.87561!10765-110E9;0.811042!10829-111D1;0.917666!10830-111D2;0.67926!10831-111D3;0.774504!10832-111D4;0.350677!10833-111D5;0.753348!10764-110E8;0.574059!10770-110F5;0.77743!10399-106A3;0.838701!10400-106A4;0.195201!10405-106A9;0.271122!10834-111D6;0.412795!10835-111D7;0.837005!10836-111D8;0.635984!10837-111D9;0.878726!10699-109G6;0.97897!10802-111A1;0.933734!10796-110I4;0.611935!10010-101C1;0.783186!10810-111A9;0.382992!10421-106C7;0.484047!10708-109H6;0.0123409!12235-129G3;0.669063!12236-129G4;0.843513!12237-129G5;0.115042!10167-103B5;0.675553!10151-102I7;0.241849!10428-106D5;0.0713108!10795-110I3;0.936969!10805-111A4;0.332169!10052-101G7;0.544987!10189-103D9;0.871981!10589-108D4;0.868532!10425-106D2;0.414068!10427-106D4;0.075086!10702-109G9;0.608502!10432-106D9;0.310768!10496-107C1;0.83477!10718-109I7;0.0788626!10011-101C2;0.766447!10053-101G8;0.623406!10686-109F2;0.734941!10084-102B3;0.175577!10012-101C3;0.333277!10085-102B4;0.103599!10482-107A5;0.153896!10419-106C5;0.353447!10080-102A8;0.42529!10760-110E4;0.226959!10709-109H7;0.289568!10710-109H8;0.996539!10703-109H1;0.0600743!10719-109I8;0.448825!10642-109A3;0.528386!10177-103C6;0.596131!10164-103B2;0.0585221!10173-103C2;0.0235624!10166-103B4;0.348214!10083-102B2;0.159056!10188-103D8;0.294435!10552-107I3;0.139863!10553-107I4;0.435255!10013-101C4;0.724266!10536-107G5;0.886643!10618-108G6;0.0442473!10423-106C9;0.0887294!10785-110H2;0.0514236!12238-129G6;0.295619!12239-129G7;0.918635!12240-129G8;0.73012!10416-106C2;0.690159!10801-110I9;0.871507!10766-110F1;0.921461!10824-111C5;0.891881!10825-111C6;0.733879!10826-111C7;0.629842!10454-106G4;0.754028!10409-106B4;0.571947!10638-108I8;0.807459!10636-108I6;0.914724!10513-107D9;0.695874!10420-106C6;0.966603!10082-102B1;0.662324!10014-101C5;0.309581!10070-101I7;0.217364!10452-106G2;0.249258!10453-106G3;0.408114!10449-106F8;0.40935!10042-101F6;0.591042!10069-101I6;0.0714079!10193-103E4;0.225509!10631-108I1;0.135182!10438-106E6;0.932618!10488-107B2;0.873317!10196-103E7;0.616279!10071-101I8;0.744142!10071-101I8;0.350427!10041-101F5;0.310149!10451-106G1;0.399209!10450-106F9;0.963785!10604-108F1;0.413218!10605-108F2;0.700712!10606-108F3;0.493458!10603-108E9;0.499832!10497-107C2;0.171991!10448-106F7;0.806808!10643-109A4;0.838962!10426-106D3;0.847658!10431-106D8;0.659801!10197-103E8;0.539197!10443-106F2;0.688899!10815-111B5;0.65802!10816-111B6;0.176014!10817-111B7;0.192941!10015-101C6;0.207632!10410-106B5;0.516751!10054-101G9;0.508915!10758-110E2;0.960675!10711-109H9;0.671454!10040-101F4;0.980551!10470-106I2;0.0997548!10415-106C1;0.713389!10198-103E9;0.858087!10614-108G2;0.933337!10612-108F9;0.833278!10549-107H9;0.363416!10615-108G3;0.401129!10487-107B1;0.978137!10433-106E1;0.254932!10688-109F4;0.57166!10444-106F3;0.513913!10444-106F3;0.978199!10485-107A8;0.984307!10413-106B8;0.65581!10175-103C4;0.684324!10161-103A8;0.0747704!12131-128D7;0.0840623!10624-108H3;0.152778!10712-109I1;0.079491!10205-103F7;0.824325!10206-103F8;0.896657!10207-103F9;0.992582!10050-101G5;0.562207!10051-101G6;0.950489!10016-101C7;0.29745!10046-101G1;0.675178!10778-110G4;0.491648!10633-108I3;0.625215!10818-111B8;0.856893!10819-111B9;0.0724251!10820-111C1;0.0788802!10484-107A7;0.0745046!10808-111A7;0.492112!10169-103B7;0.611586!10153-102I9;0.127861!13425-144D5;0.106595!13433-144E4;0.870839!13437-144E8;0.776869!11904-125F5;0.841044!11905-125F6;0.300176!10039-101F3;0.0786804!10791-110H8;0.0918677!10017-101C8;0.546001!10045-101F9;0.992595!10509-107D5;0.903477!10839-111E2;0.1789!10692-109F8;0.0841534!10079-102A7;0.151627!10078-102A6;0.483195!10721-110A1;0.547365!10569-108B2;0.801884!10570-108B3;0.0723761!10571-108B4;0.143908!10647-109A8;0.321294!10752-110D5;0.869044!10782-110G8;0.805257!10726-110A6;0.00537578!10018-101C9;0.749298!10086-102B5;0.0011077!10182-103D2;0.00483265!10165-103B3;0.108453!10499-107C4;0.101562!10408-106B3;0.296501!10019-101D1;0.732538!10068-101I5;0.512123!10075-102A3;0.55401!10077-102A5;0.97696!10727-110A7;0.467965!10775-110G1;0.0215816!10412-106B7;0.701425!12231-129F8;0.329691!12232-129F9;0.364734!12233-129G1;0.600088!12234-129G2;0.192301!10414-106B9;0.0560813!10170-103B8;0.30597!10183-103D3;0.130631!10150-102I6;0.233614!10174-103C3;0.0914546!10155-103A2;0.100641!10038-101F2;0.079297!10838-111E1;0.0905775!10759-110E3;0.540715!10514-107E1;0.522863!10465-106H6;0.843986!10691-109F7;0.869898!10843-111E6;0.595348!10844-111E7;0.833988!11747-123G1;0.244961!11748-123G2;0.00262675!11749-123G3;0.0884502!11750-123G4;0.0313151!11751-123G5;0.0161038!11840-124H4;0.0532788!11752-123G6;0.000245481!11753-123G7;0.0267375!11754-123G8;0.147631!11755-123G9;0.176549!11756-123H1;0.499528!11833-124G6;0.4204!11760-123H5;0.282006!11836-124G9;0.167545!11758-123H3;0.0966199!11835-124G8;0.236463!11762-123H7;0.0847542!11838-124H2;0.216802!11757-123H2;0.00141357!11759-123H4;0.261046!11761-123H6;0.601671!11842-124H6;0.109173!11837-124H1;0.850965!10568-108B1;0.0184224!13230-141I8;0.026117!13231-141I9;0.0140968!10696-109G3;0.0226447!10493-107B7;0.0973595!10494-107B8;0.839068!10850-111F4;0.520602!10851-111F5;0.939303!10852-111F6;0.269119!10853-111F7;0.750009!10854-111F8;0.40204!10855-111F9;0.543355!10856-111G1;0.319517!10847-111F1;0.473814!10846-111E9;0.682239!10848-111F2;0.129499!10845-111E8;0.642063!10857-111G2;0.36342!10858-111G3;0.507723!10156-103A3;0.291837!11901-125F2;0.0661784!11902-125F3;0.206519!11903-125F4;0.333183!10689-109F5;0.378809!10648-109A9;0.0776918!10784-110H1;0.323047!10744-110C6;0.971301!10772-110F7;0.117394!10474-106I6;0.859076!10600-108E6;0.69823!10684-109E9;0.464577!12226-129F3;0.133679!12227-129F4;0.20355!10508-107D4;0.0430411!10539-107G8;0.782251!10607-108F4;0.403452!10555-107I6;0.642438!10774-110F9;0.492151!10637-108I7;0.821251!10663-109C6;0.378809!10728-110A8;0.225065!10729-110A9;0.291433!10430-106D7;0.686222!10730-110B1;0.412175!10813-111B3;0.479881!10812-111B2;0.531677!10037-101F1;0.511608!10172-103C1;0.0807984!10163-103B1;0.0814696!10076-102A4;0.0906199!10073-102A1;0.183746!10036-101E9;0.304549!10195-103E6;0.110175!10277-104E7;0.171727!10434-106E2;0.171802!10550-107I1;0.842723!10545-107H5;0.901256!10544-107H4;0.4169!10704-109H2;0.508276!10510-107D6;0.24885!10558-107I9;0.714523!10020-101D2;0.622021!10732-110B3;0.951618!10049-101G4;0.938564!10698-109G5;0.628592!10437-106E5;0.0971112!10417-106C3;0.740174!10035-101E8;0.752089!10171-103B9;0.11802!10157-103A4;0.133684!10034-101E7;0.124059!10072-101I9;0.107896!10199-103F1;0.262066!10200-103F2;0.136941!10697-109G4;0.801672!10723-110A3;0.0464968!10179-103C8;0.152147!10160-103A7;0.423708!10180-103C9;0.223579!10162-103A9;0.431601!10021-101D3;0.181079!10840-111E3;0.510049!10706-109H4;0.884362!10033-101E6;0.569007!10032-101E5;0.139289!10490-107B4;0.114575!10439-106E7;0.742615!10022-101D4;0.272032!10176-103C5;0.587497!10469-106I1;0.0980115!10067-101I4;0.687457!10411-106B6;0.783066!10471-106I3;0.950845!10030-101E3;0.799611!10475-106I7;0.615383!10787-110H4;0.251622!10477-106I9;0.258301!10695-109G2;0.328882!11771-123I7;0.64882!11772-123I8;0.569377!11773-123I9;0.770434!10093-102C3;0.511176!10442-106F1;0.616081!10442-106F1;0.456233!10201-103F3;0.536937!10639-108I9;0.660831!11843-124H7;0.598512!11841-124H5;0.509817!10693-109F9;0.0857602!10436-106E4;0.961827!10483-107A6;0.392963!10282-104F3;0.0952779!10023-101D5;0.136122!10066-101I3;0.367142!10065-101I2;0.111839!10800-110I8;0.556432!10610-108F7;0.125381!10841-111E4;0.0939343!10541-107H1;0.257666!10842-111E5;0.35332!10562-108A4;0.276548!10024-101D6;0.237351!10064-101I1;0.174968!10609-108F6;0.320987!10048-101G3;0.689411!10781-110G7;0.487621!10181-103D1;0.298743!10159-103A6;0.274368!10056-101H2;0.159764!10737-110B8;0.499355!10025-101D7;0.310354!10044-101F8;0.932047!10424-106D1;0.590997!10463-106H4;0.375!10616-108G4;0.784786!10486-107A9;0.939959!10062-101H8;0.714312!10202-103F4;0.61737!10158-103A5;0.468494!10441-106E9;0.150427!10031-101E4;0.900763!10063-101H9;0.115035!10063-101H9;0.201527!11763-123H8;0.329284!11765-123I1;0.00890136!11768-123I4;0.0361504!10807-111A6;0.00118921!10790-110H7;0.192388!10798-110I6;0.333165!10786-110H3;0.717477!10591-108D6;0.496167!10593-108D8;0.335072!10590-108D5;0.519348!10026-101D8;0.751523!10096-102C6;0.79852!10168-103B6;0.879992!10154-103A1;0.139989!10209-103G2;0.0699091!10061-101H7;0.943096!10027-101D9;0.638436!10043-101F7;0.229256!10783-110G9;0.170787!10028-101E1;0.910347!10060-101H6;0.274933!10203-103F5;0.987484!10059-101H5;0.66712!10047-101G2;0.741565!10029-101E2;0.134177!10058-101H4;0.989358!10418-106C4;0.936868!10492-107B6;0.886836!10694-109G1;0.366873!10797-110I5;0.738766!10057-101H3;0.0663624!10100-102D1;0.548336!10055-101H1;0.807121!10204-103F6;0.879456!10191-103E2;0.764375!10563-108A5;0.998178
|name=NR6A1_do
|name=NR6A1_do
|tomtom_result=Esrrb#MA0141.1;-1;2.38713e-06;0.00113627;0.00225278;12;AAGTTCAAGGTCA;AGCTCAAGGTCA;+!RORA_1#MA0071.1;-3;0.000162419;0.0773114;0.0766389;10;AAGTTCAAGGTCA;ATCAAGGTCA;+!ESR2#MA0258.1;1;0.000778324;0.370482;0.244839;13;AAGTTCAAGGTCA;CAAGGTCACGGTGACCTG;+!ZAP1#MA0440.1;0;0.00147745;0.703268;0.260176;13;AAGTTCAAGGTCA;ACCTTAAAGGTCATG;+!NR4A2#MA0160.1;0;0.00161766;0.770008;0.260176;8;AAGTTCAAGGTCA;AAGGTCAC;+!HNF4A#MA0114.1;0;0.00166024;0.790276;0.260176;13;AAGTTCAAGGTCA;AGGCCAAAGGTCA;+!ct#MA0218.1;-2;0.0019774;0.941243;0.260176;6;AAGTTCAAGGTCA;GTTCAA;-!PPARG::RXRA#MA0065.2;2;0.00258836;1.23206;0.260176;13;AAGTTCAAGGTCA;GTAGGGCAAAGGTCA;+!PPARG#MA0066.1;1;0.00262252;1.24832;0.260176;13;AAGTTCAAGGTCA;GTAGGTCACGGTGACCTACT;+!NR2F1#MA0017.1;1;0.00282728;1.34578;0.260176;13;AAGTTCAAGGTCA;AGGTTCAAAGGTCA;-!NR1H2::RXRA#MA0115.1;2;0.00303261;1.44352;0.260176;13;AAGTTCAAGGTCA;AAAGGTCAAAGGTCAAC;+!ESR1#MA0112.2;-1;0.00386412;1.83932;0.303887;12;AAGTTCAAGGTCA;AGGTCAGGGTGACCTGGGCC;-!RXR::RAR_DR5#MA0159.1;-1;0.00498885;2.37469;0.36216;12;AAGTTCAAGGTCA;AGGTCATGGAGAGGTCA;+!ESR1#MA0112.2;0;0.00711038;3.38454;0.447347;13;AAGTTCAAGGTCA;GGGGTCACGGTGACCTGG;-!PPARG::RXRA#MA0065.2;4;0.0094895;4.517;0.526789;13;AAGTTCAAGGTCA;CTAGGGGTCAAAGGTCATCG;+!USV1#MA0413.1;3;0.0181385;8.63394;0.90093;13;AAGTTCAAGGTCA;CACAAATTCAGGGGGAATTT;-
}}
}}

Latest revision as of 13:38, 7 September 2012

Full Name: NR6A1_do

Motif matrix
POACGT
138.694444444444453.4722222222222255.36111111111112.472222222222225
247.01.01.01.0
32.00.046.88888888888891.1111111111111098
40.02.019.028.999999999999996
50.01.00.049.0
61.049.00.00.0
749.01.00.00.0
843.777777777777752.11111111111111031.03.11111111111111
90.01.044.777777777777754.222222222222225
101.00.030.019.0
112.04.777777777777782.041.2222222222222
122.111111111111110342.88888888888890.05.0
1342.777777777777752.11111111111111032.11111111111111033.0

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
Esrrb#MA0141.1-12.38713e-060.001136270.0022527812AAGTTCAAGGTCAAGCTCAAGGTCA+
RORA_1#MA0071.1-30.0001624190.07731140.076638910AAGTTCAAGGTCAATCAAGGTCA+
ESR2#MA0258.110.0007783240.3704820.24483913AAGTTCAAGGTCACAAGGTCACGGTGACCTG+
ZAP1#MA0440.100.001477450.7032680.26017613AAGTTCAAGGTCAACCTTAAAGGTCATG+
NR4A2#MA0160.100.001617660.7700080.2601768AAGTTCAAGGTCAAAGGTCAC+
HNF4A#MA0114.100.001660240.7902760.26017613AAGTTCAAGGTCAAGGCCAAAGGTCA+
ct#MA0218.1-20.00197740.9412430.2601766AAGTTCAAGGTCAGTTCAA-
PPARG::RXRA#MA0065.220.002588361.232060.26017613AAGTTCAAGGTCAGTAGGGCAAAGGTCA+
PPARG#MA0066.110.002622521.248320.26017613AAGTTCAAGGTCAGTAGGTCACGGTGACCTACT+
NR2F1#MA0017.110.002827281.345780.26017613AAGTTCAAGGTCAAGGTTCAAAGGTCA-
NR1H2::RXRA#MA0115.120.003032611.443520.26017613AAGTTCAAGGTCAAAAGGTCAAAGGTCAAC+
ESR1#MA0112.2-10.003864121.839320.30388712AAGTTCAAGGTCAAGGTCAGGGTGACCTGGGCC-
RXR::RAR_DR5#MA0159.1-10.004988852.374690.3621612AAGTTCAAGGTCAAGGTCATGGAGAGGTCA+
ESR1#MA0112.200.007110383.384540.44734713AAGTTCAAGGTCAGGGGTCACGGTGACCTGG-
PPARG::RXRA#MA0065.240.00948954.5170.52678913AAGTTCAAGGTCACTAGGGGTCAAAGGTCATCG+
USV1#MA0413.130.01813858.633940.9009313AAGTTCAAGGTCACACAAATTCAGGGGGAATTT-
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