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MacroAPE 1083:NR1I3 si: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;16.57790368271955;0.9688385269121809;11.410764872521245;4.198300283286133!2;24.00566572237961;0.0;9.150141643059493;0.0!3;0.0;0.0;33.1558073...")
 
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C9;0.897539!10788-110H5;0.704454!10792-110H9;0.661744!10765-110E9;0.730354!10829-111D1;0.887044!10830-111D2;0.514108!10831-111D3;0.972035!10832-111D4;0.817471!10833-111D5;0.349889!10764-110E8;0.623966!10770-110F5;0.678727!10399-106A3;0.592097!10400-106A4;0.991728!10405-106A9;0.943762!10834-111D6;0.976432!10835-111D7;0.926387!10836-111D8;0.555374!10837-111D9;0.60946!10699-109G6;0.556737!10802-111A1;0.967557!10796-110I4;0.838291!10010-101C1;0.350579!10810-111A9;0.113673!10421-106C7;0.935824!10708-109H6;0.974025!12235-129G3;0.925081!12236-129G4;0.890051!12237-129G5;0.637793!10167-103B5;0.619036!10151-102I7;0.204733!10428-106D5;0.24193!10795-110I3;0.0627376!10805-111A4;0.649779!10052-101G7;0.946528!10189-103D9;0.805696!10589-108D4;0.908264!10425-106D2;0.800615!10427-106D4;0.000619508!10702-109G9;0.616602!10432-106D9;0.712224!10496-107C1;0.877694!10718-109I7;0.796785!10011-101C2;0.629217!10053-101G8;0.690645!10686-109F2;0.514261!10084-102B3;0.500896!10012-101C3;0.435488!10085-102B4;0.254007!10482-107A5;0.0961512!10419-106C5;0.715742!10080-102A8;0.577215!10760-110E4;0.221596!10709-109H7;0.418106!10710-109H8;0.956727!10703-109H1;0.690218!10719-109I8;0.260061!10642-109A3;0.506917!10177-103C6;0.812138!10164-103B2;0.566133!10173-103C2;0.293601!10166-103B4;0.324625!10083-102B2;0.223084!10188-103D8;0.27361!10552-107I3;0.214554!10553-107I4;0.430776!10013-101C4;0.115507!10536-107G5;0.78899!10618-108G6;0.352146!10423-106C9;0.729115!10785-110H2;0.441234!12238-129G6;0.631327!12239-129G7;0.955093!12240-129G8;0.966976!10416-106C2;0.839743!10801-110I9;0.396163!10766-110F1;0.25575!10824-111C5;0.941194!10825-111C6;0.418267!10826-111C7;0.491229!10454-106G4;0.449479!10409-106B4;0.18051!10638-108I8;0.807173!10636-108I6;0.889034!10513-107D9;0.945068!10420-106C6;0.916162!10082-102B1;0.82243!10014-101C5;0.483879!10070-101I7;0.310553!10452-106G2;0.359697!10453-106G3;0.245199!10449-106F8;0.322828!10042-101F6;0.386555!10069-101I6;0.342434!10193-103E4;0.0181146!10631-108I1;0.441059!10438-106E6;0.96925!10488-107B2;0.541826!10196-103E7;0.90755!10071-101I8;0.611119!10071-101I8;0.823792!10041-101F5;0.0909775!10451-106G1;0.963248!10450-106F9;0.30971!10604-108F1;0.706161!10605-108F2;0.851413!10606-108F3;0.983293!10603-108E9;0.92409!10497-107C2;0.658319!10448-106F7;0.614362!10643-109A4;0.851141!10426-106D3;0.742044!10431-106D8;0.433387!10197-103E8;0.301127!10443-106F2;0.115421!10815-111B5;0.401621!10816-111B6;0.960064!10817-111B7;0.794911!10015-101C6;0.896602!10410-106B5;0.421864!10054-101G9;0.146679!10758-110E2;0.82256!10711-109H9;0.701177!10040-101F4;0.399831!10470-106I2;0.156843!10415-106C1;0.980306!10198-103E9;0.0868023!10614-108G2;0.425766!10612-108F9;0.371592!10549-107H9;0.779195!10615-108G3;0.808556!10487-107B1;0.419009!10433-106E1;0.737143!10688-109F4;0.33392!10444-106F3;0.635751!10444-106F3;0.473795!10485-107A8;0.558339!10413-106B8;0.228403!10175-103C4;0.464366!10161-103A8;0.519668!12131-128D7;0.566482!10624-108H3;0.870072!10712-109I1;0.833472!10205-103F7;0.724219!10206-103F8;0.0517316!10207-103F9;0.0471237!10050-101G5;0.102103!10051-101G6;0.0954521!10016-101C7;0.0631632!10046-101G1;0.0354325!10778-110G4;0.132766!10633-108I3;0.988647!10818-111B8;0.406933!10819-111B9;0.200111!10820-111C1;0.157503!10484-107A7;0.22201!10808-111A7;0.543891!10169-103B7;0.702562!10153-102I9;0.456284!13425-144D5;0.387427!13433-144E4;0.818607!13437-144E8;0.659084!11904-125F5;0.425003!11905-125F6;0.299532!10039-101F3;0.230739!10791-110H8;0.135093!10017-101C8;0.548395!10045-101F9;0.118632!10509-107D5;0.691433!10839-111E2;0.158403!10692-109F8;0.725025!10079-102A7;0.0889891!10078-102A6;0.0901491!10721-110A1;0.0296195!10569-108B2;0.865277!10570-108B3;0.470014!10571-108B4;0.838515!10647-109A8;0.38175!10752-110D5;0.986541!10782-110G8;0.840671!10726-110A6;0.504099!10018-101C9;0.418963!10086-102B5;0.135744!10182-103D2;0.14606!10165-103B3;0.514097!10499-107C4;0.380283!10408-106B3;0.867039!10019-101D1;0.892583!10068-101I5;0.981616!10075-102A3;0.84087!10077-102A5;0.605214!10727-110A7;0.308954!10775-110G1;0.586006!10412-106B7;0.455697!12231-129F8;0.185868!12232-129F9;0.104196!12233-129G1;0.205794!12234-129G2;0.0741375!10414-106B9;0.0376917!10170-103B8;0.375644!10183-103D3;0.26172!10150-102I6;0.276974!10174-103C3;0.25726!10155-103A2;0.693953!10038-101F2;0.420118!10838-111E1;0.355496!10759-110E3;0.411514!10514-107E1;0.604911!10465-106H6;0.866346!10691-109F7;0.408637!10843-111E6;0.0680947!10844-111E7;0.856131!11747-123G1;0.185685!11748-123G2;0.0831171!11749-123G3;0.337572!11750-123G4;0.137119!11751-123G5;0.557977!11840-124H4;0.475319!11752-123G6;0.364163!11753-123G7;0.402856!11754-123G8;0.190597!11755-123G9;0.139206!11756-123H1;0.27789!11833-124G6;0.876453!11760-123H5;0.998123!11836-124G9;0.872351!11758-123H3;0.341654!11835-124G8;0.776074!11762-123H7;0.808331!11838-124H2;0.965637!11757-123H2;0.471968!11759-123H4;0.565051!11761-123H6;0.684817!11842-124H6;0.687243!11837-124H1;0.796452!10568-108B1;0.96771!13230-141I8;0.545069!13231-141I9;0.231614!10696-109G3;0.240699!10493-107B7;0.346092!10494-107B8;0.301898!10850-111F4;0.642215!10851-111F5;0.547313!10852-111F6;0.277917!10853-111F7;0.150363!10854-111F8;0.141789!10855-111F9;0.0805354!10856-111G1;0.71667!10847-111F1;0.699258!10846-111E9;0.297087!10848-111F2;0.852998!10845-111E8;0.0359032!10857-111G2;0.0119012!10858-111G3;0.32135!10156-103A3;0.174632!11901-125F2;0.28673!11902-125F3;0.290746!11903-125F4;0.194695!10689-109F5;0.428117!10648-109A9;0.810911!10784-110H1;0.824446!10744-110C6;0.829567!10772-110F7;0.949447!10474-106I6;0.130001!10600-108E6;0.400758!10684-109E9;0.551751!12226-129F3;0.101644!12227-129F4;0.35561!10508-107D4;0.300764!10539-107G8;0.422776!10607-108F4;0.179193!10555-107I6;0.55222!10774-110F9;0.65843!10637-108I7;0.777302!10663-109C6;0.281618!10728-110A8;0.153713!10729-110A9;0.177819!10430-106D7;0.783303!10730-110B1;0.856252!10813-111B3;0.681307!10812-111B2;0.304003!10037-101F1;0.155306!10172-103C1;0.165237!10163-103B1;0.234806!10076-102A4;0.208762!10073-102A1;0.220557!10036-101E9;0.146892!10195-103E6;0.206743!10277-104E7;0.248304!10434-106E2;0.931454!10550-107I1;0.249649!10545-107H5;0.384103!10544-107H4;0.669481!10704-109H2;0.661638!10510-107D6;0.347776!10558-107I9;0.302889!10020-101D2;0.468666!10732-110B3;0.256289!10049-101G4;0.39898!10698-109G5;0.750869!10437-106E5;0.56125!10417-106C3;0.0818617!10035-101E8;0.800283!10171-103B9;0.160558!10157-103A4;0.283225!10034-101E7;0.216234!10072-101I9;0.179158!10199-103F1;0.0665138!10200-103F2;0.609043!10697-109G4;0.158681!10723-110A3;0.759718!10179-103C8;0.529062!10160-103A7;0.446889!10180-103C9;0.260199!10162-103A9;0.584968!10021-101D3;0.0898414!10840-111E3;0.897155!10706-109H4;0.833217!10033-101E6;0.796201!10032-101E5;0.252157!10490-107B4;0.234539!10439-106E7;0.719332!10022-101D4;0.929482!10176-103C5;0.843877!10469-106I1;0.220356!10067-101I4;0.569431!10411-106B6;0.956114!10471-106I3;0.816655!10030-101E3;0.211018!10475-106I7;0.830194!10787-110H4;0.809233!10477-106I9;0.22135!10695-109G2;0.19693!11771-123I7;0.276175!11772-123I8;0.068991!11773-123I9;0.184891!10093-102C3;0.125948!10442-106F1;0.73867!10442-106F1;0.519636!10201-103F3;0.461745!10639-108I9;0.812568!11843-124H7;0.96508!11841-124H5;0.678434!10693-109F9;0.468447!10436-106E4;0.635287!10483-107A6;0.837113!10282-104F3;0.288863!10023-101D5;0.0126127!10066-101I3;0.026781!10065-101I2;0.0564563!10800-110I8;0.04062!10610-108F7;0.268939!10841-111E4;0.954767!10541-107H1;0.939508!10842-111E5;0.747348!10562-108A4;0.219435!10024-101D6;0.367074!10064-101I1;0.386182!10609-108F6;0.302051!10048-101G3;0.661187!10781-110G7;0.471705!10181-103D1;0.339433!10159-103A6;0.781704!10056-101H2;0.742074!10737-110B8;0.897017!10025-101D7;0.629294!10044-101F8;0.51846!10424-106D1;0.896829!10463-106H4;0.981687!10616-108G4;0.170186!10486-107A9;0.234047!10062-101H8;0.719318!10202-103F4;0.286243!10158-103A5;0.401056!10441-106E9;0.930697!10031-101E4;0.947692!10063-101H9;0.263045!10063-101H9;0.0820645!11763-123H8;0.693788!11765-123I1;0.444606!11768-123I4;0.439077!10807-111A6;0.528828!10790-110H7;0.877286!10798-110I6;0.899772!10786-110H3;0.992305!10591-108D6;0.233451!10593-108D8;0.670083!10590-108D5;0.273979!10026-101D8;0.904534!10096-102C6;0.309097!10168-103B6;0.377816!10154-103A1;0.653658!10209-103G2;0.486234!10061-101H7;0.157245!10027-101D9;0.0837213!10043-101F7;0.966504!10783-110G9;0.903624!10028-101E1;0.353683!10060-101H6;0.186355!10203-103F5;0.0751361!10059-101H5;0.0789018!10047-101G2;0.0126991!10029-101E2;0.788365!10058-101H4;0.421248!10418-106C4;0.0910822!10492-107B6;0.596528!10694-109G1;0.0626755!10797-110I5;0.336447!10057-101H3;0.146457!10100-102D1;0.0882659!10055-101H1;0.508916!10204-103F6;0.71082!10191-103E2;0.781005!10563-108A5;0.162653
|name=NR1I3_si
|name=NR1I3_si
|tomtom_result=NR2F1#MA0017.1;7;6.41515e-05;0.0305361;0.0564252;7;AAGTTCAT;AGGTTCAAAGGTCA;-!RXR::RAR_DR5#MA0159.1;-1;0.00011958;0.0569203;0.0564252;7;AAGTTCAT;AGGTCATGGAGAGGTCA;+!NR4A2#MA0160.1;0;0.000212087;0.100953;0.0667167;8;AAGTTCAT;AAGGTCAC;+!ESR2#MA0258.1;1;0.000348038;0.165666;0.0821124;8;AAGTTCAT;CAAGGTCACGGTGACCTG;+!RORA_1#MA0071.1;3;0.000480357;0.22865;0.0906643;7;AAGTTCAT;ATCAAGGTCA;+!HNF4A#MA0114.1;6;0.000604165;0.287583;0.0940805;7;AAGTTCAT;AGGCCAAAGGTCA;+!PPARG::RXRA#MA0065.2;10;0.000697839;0.332171;0.0940805;8;AAGTTCAT;CTAGGGGTCAAAGGTCATCG;+!PPARG::RXRA#MA0065.2;8;0.00109917;0.523205;0.129663;7;AAGTTCAT;GTAGGGCAAAGGTCA;+!RXRA::VDR#MA0074.1;8;0.00129179;0.614891;0.135454;7;AAGTTCAT;GGGTCAACGAGTTCA;+!Esrrb#MA0141.1;5;0.00147684;0.702978;0.139373;7;AAGTTCAT;AGCTCAAGGTCA;+!ESR1#MA0112.2;4;0.00393008;1.87072;0.309074;8;AAGTTCAT;GGCCCAGGTCACCCTGACCT;+!ZAP1#MA0440.1;6;0.00525787;2.50275;0.354425;8;AAGTTCAT;ACCTTAAAGGTCATG;+!ESR1#MA0112.2;0;0.00575153;2.73773;0.361855;8;AAGTTCAT;GGGGTCACGGTGACCTGG;-!USV1#MA0413.1;3;0.00758092;3.60852;0.447141;8;AAGTTCAT;CACAAATTCAGGGGGAATTT;-!NR1H2::RXRA#MA0115.1;1;0.00866575;4.1249;0.48106;8;AAGTTCAT;AAAGGTCAAAGGTCAAC;+!PPARG#MA0066.1;1;0.010936;5.20554;0.573362;8;AAGTTCAT;GTAGGTCACGGTGACCTACT;+!ct#MA0218.1;-2;0.0132649;6.3141;0.65886;6;AAGTTCAT;GTTCAA;-!RORA_2#MA0072.1;6;0.0161398;7.68256;0.761573;8;AAGTTCAT;TATAAGTAGGTCAA;+!bZIP910#MA0096.1;-1;0.0178328;8.4884;0.801386;7;AAGTTCAT;ACGTCAT;-
}}
}}

Latest revision as of 13:39, 7 September 2012

Full Name: NR1I3_si

Motif matrix
POACGT
116.577903682719550.968838526912180911.4107648725212454.198300283286133
224.005665722379610.09.1501416430594930.0
30.00.033.15580736543910.0
40.00.012.91784702549576720.237960339943335
50.00.00.033.1558073654391
60.030.0339943342776332.0453257790368281.0764872521246471
733.15580736543910.00.00.0
81.9376770538243659.79603399433426610.65722379603398410.764872521246472

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
NR2F1#MA0017.176.41515e-050.03053610.05642527AAGTTCATAGGTTCAAAGGTCA-
RXR::RAR_DR5#MA0159.1-10.000119580.05692030.05642527AAGTTCATAGGTCATGGAGAGGTCA+
NR4A2#MA0160.100.0002120870.1009530.06671678AAGTTCATAAGGTCAC+
ESR2#MA0258.110.0003480380.1656660.08211248AAGTTCATCAAGGTCACGGTGACCTG+
RORA_1#MA0071.130.0004803570.228650.09066437AAGTTCATATCAAGGTCA+
HNF4A#MA0114.160.0006041650.2875830.09408057AAGTTCATAGGCCAAAGGTCA+
PPARG::RXRA#MA0065.2100.0006978390.3321710.09408058AAGTTCATCTAGGGGTCAAAGGTCATCG+
PPARG::RXRA#MA0065.280.001099170.5232050.1296637AAGTTCATGTAGGGCAAAGGTCA+
RXRA::VDR#MA0074.180.001291790.6148910.1354547AAGTTCATGGGTCAACGAGTTCA+
Esrrb#MA0141.150.001476840.7029780.1393737AAGTTCATAGCTCAAGGTCA+
ESR1#MA0112.240.003930081.870720.3090748AAGTTCATGGCCCAGGTCACCCTGACCT+
ZAP1#MA0440.160.005257872.502750.3544258AAGTTCATACCTTAAAGGTCATG+
ESR1#MA0112.200.005751532.737730.3618558AAGTTCATGGGGTCACGGTGACCTGG-
USV1#MA0413.130.007580923.608520.4471418AAGTTCATCACAAATTCAGGGGGAATTT-
NR1H2::RXRA#MA0115.110.008665754.12490.481068AAGTTCATAAAGGTCAAAGGTCAAC+
PPARG#MA0066.110.0109365.205540.5733628AAGTTCATGTAGGTCACGGTGACCTACT+
ct#MA0218.1-20.01326496.31410.658866AAGTTCATGTTCAA-
RORA_2#MA0072.160.01613987.682560.7615738AAGTTCATTATAAGTAGGTCAA+
bZIP910#MA0096.1-10.01783288.48840.8013867AAGTTCATACGTCAT-
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