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MacroAPE 1083:CTBGTCBTC,motif677: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;0.592;590.224;0.592;0.592!2;203.056;0.592;0.592;387.76!3;79.92;195.952;155.696;160.432!4;0.592;132.608;458.208;0.592!5;0.592;0.592;0.592;590...")
 
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;0.329271!10789-110H6;0.380379!10828-111C9;0.172962!10788-110H5;0.253598!10792-110H9;0.976726!10765-110E9;0.584871!10829-111D1;0.623029!10830-111D2;0.573969!10831-111D3;0.383041!10832-111D4;0.113259!10833-111D5;0.440331!10764-110E8;0.513575!10770-110F5;0.811051!10399-106A3;0.741051!10400-106A4;0.894095!10405-106A9;0.717494!10834-111D6;0.890546!10835-111D7;0.451459!10836-111D8;0.457656!10837-111D9;0.52374!10699-109G6;0.538891!10802-111A1;0.126526!10796-110I4;0.601334!10010-101C1;0.687793!10810-111A9;0.58833!10421-106C7;0.971332!10708-109H6;0.36324!12235-129G3;0.197808!12236-129G4;0.0367322!12237-129G5;0.611294!10167-103B5;0.0279223!10151-102I7;0.931807!10428-106D5;0.7661!10795-110I3;0.849645!10805-111A4;0.839422!10052-101G7;0.759176!10189-103D9;0.933623!10589-108D4;0.63043!10425-106D2;0.530541!10427-106D4;0.64936!10702-109G9;0.381845!10432-106D9;0.0218983!10496-107C1;0.99063!10718-109I7;0.687948!10011-101C2;0.461776!10053-101G8;0.798608!10686-109F2;0.247591!10084-102B3;0.137314!10012-101C3;0.948939!10085-102B4;0.86579!10482-107A5;0.917384!10419-106C5;0.738579!10080-102A8;0.94559!10760-110E4;0.760592!10709-109H7;0.711308!10710-109H8;0.537292!10703-109H1;0.309144!10719-109I8;0.419193!10642-109A3;0.622317!10177-103C6;0.552903!10164-103B2;0.88345!10173-103C2;0.713319!10166-103B4;0.797843!10083-102B2;0.837034!10188-103D8;0.721189!10552-107I3;0.702513!10553-107I4;0.639184!10013-101C4;0.586528!10536-107G5;0.417639!10618-108G6;0.263254!10423-106C9;0.774297!10785-110H2;0.882757!12238-129G6;0.954833!12239-129G7;0.360008!12240-129G8;0.11163!10416-106C2;0.849464!10801-110I9;0.397668!10766-110F1;0.731395!10824-111C5;0.828753!10825-111C6;0.780427!10826-111C7;0.729725!10454-106G4;0.741437!10409-106B4;0.545799!10638-108I8;0.561811!10636-108I6;0.77285!10513-107D9;0.715089!10420-106C6;0.863151!10082-102B1;0.743363!10014-101C5;0.704064!10070-101I7;0.824359!10452-106G2;0.848356!10453-106G3;0.820357!10449-106F8;0.999965!10042-101F6;0.886486!10069-101I6;0.754501!10193-103E4;0.644923!10631-108I1;0.924802!10438-106E6;0.361066!10488-107B2;0.982341!10196-103E7;0.819183!10071-101I8;0.29564!10071-101I8;0.918852!10041-101F5;0.823784!10451-106G1;0.97727!10450-106F9;0.556787!10604-108F1;0.916488!10605-108F2;0.295069!10606-108F3;0.200987!10603-108E9;0.296056!10497-107C2;0.0478027!10448-106F7;0.391504!10643-109A4;0.536422!10426-106D3;0.379531!10431-106D8;0.797681!10197-103E8;0.735753!10443-106F2;0.642327!10815-111B5;0.205928!10816-111B6;0.736897!10817-111B7;0.797106!10015-101C6;0.832734!10410-106B5;0.699479!10054-101G9;0.404823!10758-110E2;0.981031!10711-109H9;0.650125!10040-101F4;0.471001!10470-106I2;0.803846!10415-106C1;0.939056!10198-103E9;0.461915!10614-108G2;0.912579!10612-108F9;0.997193!10549-107H9;0.829911!10615-108G3;0.515858!10487-107B1;0.765423!10433-106E1;0.340533!10688-109F4;0.69266!10444-106F3;0.539918!10444-106F3;0.0543128!10485-107A8;0.0406851!10413-106B8;0.649336!10175-103C4;0.589878!10161-103A8;0.878324!12131-128D7;0.741852!10624-108H3;0.256671!10712-109I1;0.211031!10205-103F7;0.66716!10206-103F8;0.978395!10207-103F9;0.962711!10050-101G5;0.962573!10051-101G6;0.741205!10016-101C7;0.618496!10046-101G1;0.904557!10778-110G4;0.604361!10633-108I3;0.33177!10818-111B8;0.705015!10819-111B9;0.455678!10820-111C1;0.409777!10484-107A7;0.444558!10808-111A7;0.212944!10169-103B7;0.477979!10153-102I9;0.970312!13425-144D5;0.799578!13433-144E4;0.616727!13437-144E8;0.844601!11904-125F5;0.842816!11905-125F6;0.443015!10039-101F3;0.680972!10791-110H8;0.836738!10017-101C8;0.723176!10045-101F9;0.643822!10509-107D5;0.901943!10839-111E2;0.941178!10692-109F8;0.941114!10079-102A7;0.985253!10078-102A6;0.714157!10721-110A1;0.631047!10569-108B2;0.789029!10570-108B3;0.146088!10571-108B4;0.0688172!10647-109A8;0.169185!10752-110D5;0.54194!10782-110G8;0.766494!10726-110A6;0.0395735!10018-101C9;0.509729!10086-102B5;0.798464!10182-103D2;0.13793!10165-103B3;0.730776!10499-107C4;0.724652!10408-106B3;0.582241!10019-101D1;0.751043!10068-101I5;0.894878!10075-102A3;0.882544!10077-102A5;0.952283!10727-110A7;0.627681!10775-110G1;0.424006!10412-106B7;0.428823!12231-129F8;0.879278!12232-129F9;0.474335!12233-129G1;0.213193!12234-129G2;0.448532!10414-106B9;0.497762!10170-103B8;0.681493!10183-103D3;0.931187!10150-102I6;0.827201!10174-103C3;0.853917!10155-103A2;0.810385!10038-101F2;0.781278!10838-111E1;0.754256!10759-110E3;0.578515!10514-107E1;0.333042!10465-106H6;0.863742!10691-109F7;0.91099!10843-111E6;0.156504!10844-111E7;0.860253!11747-123G1;0.501523!11748-123G2;0.0491054!11749-123G3;0.0332622!11750-123G4;0.0860187!11751-123G5;0.138178!11840-124H4;0.0461029!11752-123G6;0.0280962!11753-123G7;0.0223868!11754-123G8;0.0578056!11755-123G9;0.473553!11756-123H1;0.264811!11833-124G6;0.115388!11760-123H5;0.228482!11836-124G9;0.196126!11758-123H3;0.0399423!11835-124G8;0.0819503!11762-123H7;0.440182!11838-124H2;0.165406!11757-123H2;0.15339!11759-123H4;0.45729!11761-123H6;0.121295!11842-124H6;0.185558!11837-124H1;0.249602!10568-108B1;0.310532!13230-141I8;0.458527!13231-141I9;0.0797493!10696-109G3;0.0594619!10493-107B7;0.0561558!10494-107B8;0.641192!10850-111F4;0.801828!10851-111F5;0.203335!10852-111F6;0.699051!10853-111F7;0.230151!10854-111F8;0.436447!10855-111F9;0.482306!10856-111G1;0.543685!10847-111F1;0.782833!10846-111E9;0.634733!10848-111F2;0.974018!10845-111E8;0.544817!10857-111G2;0.760946!10858-111G3;0.71037!10156-103A3;0.504382!11901-125F2;0.867343!11902-125F3;0.919185!11903-125F4;0.992511!10689-109F5;0.925138!10648-109A9;0.637756!10784-110H1;0.470663!10744-110C6;0.958043!10772-110F7;0.750528!10474-106I6;0.652408!10600-108E6;0.492423!10684-109E9;0.473249!12226-129F3;0.846735!12227-129F4;0.47069!10508-107D4;0.799748!10539-107G8;0.302625!10607-108F4;0.09427!10555-107I6;0.139711!10774-110F9;0.311421!10637-108I7;0.337549!10663-109C6;0.23157!10728-110A8;0.0514374!10729-110A9;0.371672!10430-106D7;0.0281295!10730-110B1;0.932088!10813-111B3;0.530486!10812-111B2;0.658715!10037-101F1;0.131857!10172-103C1;0.785195!10163-103B1;0.738793!10076-102A4;0.90077!10073-102A1;0.733376!10036-101E9;0.898172!10195-103E6;0.861416!10277-104E7;0.766945!10434-106E2;0.954433!10550-107I1;0.466971!10545-107H5;0.682959!10544-107H4;0.611536!10704-109H2;0.901716!10510-107D6;0.157435!10558-107I9;0.617429!10020-101D2;0.96754!10732-110B3;0.829068!10049-101G4;0.773258!10698-109G5;0.540755!10437-106E5;0.986426!10417-106C3;0.735432!10035-101E8;0.467211!10171-103B9;0.837616!10157-103A4;0.990977!10034-101E7;0.923568!10072-101I9;0.855015!10199-103F1;0.901922!10200-103F2;0.287211!10697-109G4;0.6505!10723-110A3;0.559573!10179-103C8;0.963422!10160-103A7;0.66201!10180-103C9;0.624207!10162-103A9;0.657833!10021-101D3;0.931751!10840-111E3;0.725481!10706-109H4;0.241166!10033-101E6;0.325121!10032-101E5;0.797155!10490-107B4;0.934406!10439-106E7;0.652789!10022-101D4;0.841242!10176-103C5;0.702153!10469-106I1;0.77173!10067-101I4;0.987964!10411-106B6;0.917425!10471-106I3;0.698333!10030-101E3;0.183328!10475-106I7;0.851156!10787-110H4;0.431193!10477-106I9;0.448088!10695-109G2;0.966085!11771-123I7;0.436252!11772-123I8;0.143609!11773-123I9;0.195409!10093-102C3;0.147894!10442-106F1;0.918821!10442-106F1;0.746749!10201-103F3;0.60394!10639-108I9;0.482775!11843-124H7;0.31489!11841-124H5;0.393688!10693-109F9;0.521727!10436-106E4;0.553267!10483-107A6;0.217826!10282-104F3;0.830805!10023-101D5;0.516118!10066-101I3;0.340515!10065-101I2;0.436853!10800-110I8;0.414623!10610-108F7;0.787142!10841-111E4;0.450984!10541-107H1;0.791583!10842-111E5;0.535792!10562-108A4;0.571513!10024-101D6;0.560629!10064-101I1;0.757104!10609-108F6;0.394765!10048-101G3;0.892713!10781-110G7;0.970081!10181-103D1;0.534254!10159-103A6;0.649773!10056-101H2;0.583185!10737-110B8;0.91891!10025-101D7;0.0191393!10044-101F8;0.257107!10424-106D1;0.26469!10463-106H4;0.578433!10616-108G4;0.940314!10486-107A9;0.445438!10062-101H8;0.452843!10202-103F4;0.835697!10158-103A5;0.652131!10441-106E9;0.679223!10031-101E4;0.911797!10063-101H9;0.937075!10063-101H9;0.935446!11763-123H8;0.773479!11765-123I1;0.141066!11768-123I4;0.131726!10807-111A6;0.119914!10790-110H7;0.958737!10798-110I6;0.470589!10786-110H3;0.290144!10591-108D6;0.741674!10593-108D8;0.499772!10590-108D5;0.717367!10026-101D8;0.682393!10096-102C6;0.956404!10168-103B6;0.422206!10154-103A1;0.861964!10209-103G2;0.965211!10061-101H7;0.926729!10027-101D9;0.827915!10043-101F7;0.26703!10783-110G9;0.31863!10028-101E1;0.642952!10060-101H6;0.780553!10203-103F5;0.72213!10059-101H5;0.908436!10047-101G2;0.595428!10029-101E2;0.773946!10058-101H4;0.760524!10418-106C4;0.69265!10492-107B6;0.99089!10694-109G1;0.434263!10797-110I5;0.686263!10057-101H3;0.45015!10100-102D1;0.497273!10055-101H1;0.627817!10204-103F6;0.34543!10191-103E2;0.545694!10563-108A5;0.656847
|name=CTBGTCBTC,motif677,CNhs11985,T:592.0(23.70%),B:11219.9(15.04%),P:1e-29
|name=CTBGTCBTC,motif677,CNhs11985,T:592.0(23.70%),B:11219.9(15.04%),P:1e-29
|tomtom_result=HMG-1#MA0044.1;0;0.000356251;0.169575;0.339151;9;CTCGTCCTC;GTTGTACTC;+!HIF1A::ARNT#MA0259.1;1;0.009022;4.29447;1;7;CTCGTCCTC;GCACGTCC;-!Tal1::Gata1#MA0140.1;5;0.015841;7.54033;1;9;CTCGTCCTC;CTTATCTGTCCCCACCAG;-!SWI5#MA0402.1;2;0.019827;9.43764;1;6;CTCGTCCTC;TGCTGGTT;+
}}
}}

Latest revision as of 14:07, 7 September 2012

Full Name: CTBGTCBTC,motif677,CNhs11985,T:592.0(23.70%),B:11219.9(15.04%),P:1e-29

Motif matrix
POACGT
10.592590.2240.5920.592
2203.0560.5920.592387.76
379.92195.952155.696160.432
40.592132.608458.2080.592
50.5920.5920.592590.224
6194.768300.7360.59295.904
766.304214.896149.184162.208
80.59227.824175.232388.352
952.096313.76117.808108.336

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
HMG-1#MA0044.100.0003562510.1695750.3391519CTCGTCCTCGTTGTACTC+
HIF1A::ARNT#MA0259.110.0090224.2944717CTCGTCCTCGCACGTCC-
Tal1::Gata1#MA0140.150.0158417.5403319CTCGTCCTCCTTATCTGTCCCCACCAG-
SWI5#MA0402.120.0198279.4376416CTCGTCCTCTGCTGGTT+
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