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MacroAPE 1083:CTTCTTTCC,motif732: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;167.96;779.076;38.76;306.204!2;1.292;195.092;201.552;894.064!3;18.088;271.32;89.148;913.444!4;1.292;881.144;111.112;298.452!5;43.928;200.26;...")
 
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.687255!10828-111C9;0.6997!10788-110H5;0.893952!10792-110H9;0.954737!10765-110E9;0.799343!10829-111D1;0.951524!10830-111D2;0.966789!10831-111D3;0.224429!10832-111D4;0.878646!10833-111D5;0.73548!10764-110E8;0.913506!10770-110F5;0.926756!10399-106A3;0.784574!10400-106A4;0.541658!10405-106A9;0.460997!10834-111D6;0.522904!10835-111D7;0.932416!10836-111D8;0.468805!10837-111D9;0.792305!10699-109G6;0.914012!10802-111A1;0.343673!10796-110I4;0.19053!10010-101C1;0.381653!10810-111A9;0.386118!10421-106C7;0.559059!10708-109H6;0.295931!12235-129G3;0.744918!12236-129G4;0.458769!12237-129G5;0.986391!10167-103B5;0.334655!10151-102I7;0.909544!10428-106D5;0.875398!10795-110I3;0.528067!10805-111A4;0.562072!10052-101G7;0.331904!10189-103D9;0.700609!10589-108D4;0.212984!10425-106D2;0.197145!10427-106D4;0.236913!10702-109G9;0.983489!10432-106D9;0.56021!10496-107C1;0.445723!10718-109I7;0.230263!10011-101C2;0.763899!10053-101G8;0.345632!10686-109F2;0.374609!10084-102B3;0.908141!10012-101C3;0.724323!10085-102B4;0.713928!10482-107A5;0.892462!10419-106C5;0.234265!10080-102A8;0.173184!10760-110E4;0.331719!10709-109H7;0.0737249!10710-109H8;0.325676!10703-109H1;0.503679!10719-109I8;0.291476!10642-109A3;0.850152!10177-103C6;0.327506!10164-103B2;0.89461!10173-103C2;0.693359!10166-103B4;0.602882!10083-102B2;0.666737!10188-103D8;0.510269!10552-107I3;0.987316!10553-107I4;0.32679!10013-101C4;0.0121141!10536-107G5;0.256077!10618-108G6;0.904209!10423-106C9;0.0670949!10785-110H2;0.0164484!12238-129G6;0.0257256!12239-129G7;0.385572!12240-129G8;0.88208!10416-106C2;0.336751!10801-110I9;0.806602!10766-110F1;0.659697!10824-111C5;0.520307!10825-111C6;0.66629!10826-111C7;0.685329!10454-106G4;0.718422!10409-106B4;0.525063!10638-108I8;0.633789!10636-108I6;0.102793!10513-107D9;0.374582!10420-106C6;0.403205!10082-102B1;0.32403!10014-101C5;0.642546!10070-101I7;0.92199!10452-106G2;0.0467835!10453-106G3;0.795064!10449-106F8;0.504957!10042-101F6;0.577623!10069-101I6;0.593083!10193-103E4;0.431205!10631-108I1;0.743174!10438-106E6;0.81912!10488-107B2;0.134946!10196-103E7;0.628329!10071-101I8;0.70858!10071-101I8;0.283289!10041-101F5;0.928145!10451-106G1;0.424297!10450-106F9;0.298719!10604-108F1;0.314109!10605-108F2;0.596928!10606-108F3;0.649594!10603-108E9;0.599932!10497-107C2;0.53!10448-106F7;0.227255!10643-109A4;0.895673!10426-106D3;0.0229019!10431-106D8;0.0841299!10197-103E8;0.0589798!10443-106F2;0.392159!10815-111B5;0.83532!10816-111B6;0.27554!10817-111B7;0.416693!10015-101C6;0.247662!10410-106B5;0.539876!10054-101G9;0.412601!10758-110E2;0.616007!10711-109H9;0.563691!10040-101F4;0.38287!10470-106I2;0.792925!10415-106C1;0.163486!10198-103E9;0.0131155!10614-108G2;0.61699!10612-108F9;0.261409!10549-107H9;0.113092!10615-108G3;0.660198!10487-107B1;0.403042!10433-106E1;0.517774!10688-109F4;0.307575!10444-106F3;0.0458365!10444-106F3;0.647395!10485-107A8;0.520148!10413-106B8;0.503424!10175-103C4;0.690811!10161-103A8;0.639273!12131-128D7;0.524948!10624-108H3;0.809806!10712-109I1;0.784621!10205-103F7;0.969202!10206-103F8;0.605346!10207-103F9;0.921776!10050-101G5;0.447328!10051-101G6;0.294531!10016-101C7;0.248652!10046-101G1;0.741454!10778-110G4;0.847812!10633-108I3;0.754465!10818-111B8;0.440325!10819-111B9;0.741417!10820-111C1;0.752532!10484-107A7;0.739526!10808-111A7;0.313189!10169-103B7;0.912802!10153-102I9;0.934035!13425-144D5;0.890901!13433-144E4;0.939988!13437-144E8;0.90044!11904-125F5;0.904264!11905-125F6;0.890833!10039-101F3;0.739583!10791-110H8;0.848866!10017-101C8;0.0790894!10045-101F9;0.603724!10509-107D5;0.777585!10839-111E2;0.547243!10692-109F8;0.169037!10079-102A7;0.602745!10078-102A6;0.651733!10721-110A1;0.605412!10569-108B2;0.54966!10570-108B3;0.596527!10571-108B4;0.703993!10647-109A8;0.147504!10752-110D5;0.559864!10782-110G8;0.759719!10726-110A6;0.934545!10018-101C9;0.518366!10086-102B5;0.507152!10182-103D2;0.98106!10165-103B3;0.497753!10499-107C4;0.459371!10408-106B3;0.230098!10019-101D1;0.18372!10068-101I5;0.128538!10075-102A3;0.2809!10077-102A5;0.133351!10727-110A7;0.177656!10775-110G1;0.821522!10412-106B7;0.889366!12231-129F8;0.0535953!12232-129F9;0.421146!12233-129G1;0.659451!12234-129G2;0.315044!10414-106B9;0.269268!10170-103B8;0.207523!10183-103D3;0.871853!10150-102I6;0.936108!10174-103C3;0.775106!10155-103A2;0.661292!10038-101F2;0.635653!10838-111E1;0.665743!10759-110E3;0.732624!10514-107E1;0.0240629!10465-106H6;0.986745!10691-109F7;0.0716576!10843-111E6;0.494975!10844-111E7;0.386719!11747-123G1;0.406301!11748-123G2;0.156486!11749-123G3;0.200954!11750-123G4;0.127601!11751-123G5;0.151825!11840-124H4;0.0707894!11752-123G6;0.296807!11753-123G7;0.989427!11754-123G8;0.229463!11755-123G9;0.242048!11756-123H1;0.69062!11833-124G6;0.273506!11760-123H5;0.305153!11836-124G9;0.118174!11758-123H3;0.127746!11835-124G8;0.389328!11762-123H7;0.336754!11838-124H2;0.458146!11757-123H2;0.83299!11759-123H4;0.375902!11761-123H6;0.161901!11842-124H6;0.305621!11837-124H1;0.365005!10568-108B1;0.315801!13230-141I8;0.463739!13231-141I9;0.328545!10696-109G3;0.47737!10493-107B7;0.509131!10494-107B8;0.0968636!10850-111F4;0.0549967!10851-111F5;0.501265!10852-111F6;0.963031!10853-111F7;0.59905!10854-111F8;0.500054!10855-111F9;0.937038!10856-111G1;0.0686106!10847-111F1;0.887558!10846-111E9;0.659727!10848-111F2;0.630834!10845-111E8;0.797991!10857-111G2;0.238811!10858-111G3;0.252572!10156-103A3;0.402094!11901-125F2;0.708603!11902-125F3;0.545854!11903-125F4;0.430985!10689-109F5;0.420089!10648-109A9;0.417328!10784-110H1;0.630105!10744-110C6;0.433813!10772-110F7;0.677505!10474-106I6;0.443159!10600-108E6;0.965599!10684-109E9;0.824292!12226-129F3;0.967647!12227-129F4;0.0510805!10508-107D4;0.824024!10539-107G8;0.158624!10607-108F4;0.314902!10555-107I6;0.457186!10774-110F9;0.53549!10637-108I7;0.912423!10663-109C6;0.947612!10728-110A8;0.97809!10729-110A9;0.901483!10430-106D7;0.596839!10730-110B1;0.952741!10813-111B3;0.517908!10812-111B2;0.405023!10037-101F1;0.79517!10172-103C1;0.796651!10163-103B1;0.744128!10076-102A4;0.70996!10073-102A1;0.858498!10036-101E9;0.999358!10195-103E6;0.6729!10277-104E7;0.852924!10434-106E2;0.517837!10550-107I1;0.0593037!10545-107H5;0.018781!10544-107H4;0.24802!10704-109H2;0.198889!10510-107D6;0.467949!10558-107I9;0.350028!10020-101D2;0.804055!10732-110B3;0.384466!10049-101G4;0.557141!10698-109G5;0.187401!10437-106E5;0.0588292!10417-106C3;0.639556!10035-101E8;0.124214!10171-103B9;0.701102!10157-103A4;0.807986!10034-101E7;0.800863!10072-101I9;0.774395!10199-103F1;0.985402!10200-103F2;0.990888!10697-109G4;0.393482!10723-110A3;0.170379!10179-103C8;0.211793!10160-103A7;0.94467!10180-103C9;0.951278!10162-103A9;0.671768!10021-101D3;0.561186!10840-111E3;0.680387!10706-109H4;0.886826!10033-101E6;0.586852!10032-101E5;0.42132!10490-107B4;0.75109!10439-106E7;0.353243!10022-101D4;0.07194!10176-103C5;0.352447!10469-106I1;0.67762!10067-101I4;0.209123!10411-106B6;0.411992!10471-106I3;0.259858!10030-101E3;0.33783!10475-106I7;0.852975!10787-110H4;0.714631!10477-106I9;0.50447!10695-109G2;0.648094!11771-123I7;0.26034!11772-123I8;0.168919!11773-123I9;0.561482!10093-102C3;0.390175!10442-106F1;0.972094!10442-106F1;0.892357!10201-103F3;0.802871!10639-108I9;0.91399!11843-124H7;0.00291754!11841-124H5;0.26852!10693-109F9;0.761801!10436-106E4;0.30851!10483-107A6;0.161274!10282-104F3;0.628148!10023-101D5;0.99792!10066-101I3;0.800827!10065-101I2;0.618233!10800-110I8;0.776156!10610-108F7;0.190479!10841-111E4;0.661213!10541-107H1;0.814474!10842-111E5;0.301672!10562-108A4;0.657505!10024-101D6;0.215787!10064-101I1;0.921315!10609-108F6;0.514712!10048-101G3;0.156063!10781-110G7;0.500543!10181-103D1;0.118164!10159-103A6;0.762967!10056-101H2;0.691141!10737-110B8;0.997344!10025-101D7;0.496477!10044-101F8;0.202466!10424-106D1;0.215266!10463-106H4;0.610815!10616-108G4;0.00653414!10486-107A9;0.171749!10062-101H8;0.398078!10202-103F4;0.64537!10158-103A5;0.389223!10441-106E9;0.539283!10031-101E4;0.631492!10063-101H9;0.796965!10063-101H9;0.923817!11763-123H8;0.615905!11765-123I1;0.344056!11768-123I4;0.358409!10807-111A6;0.186919!10790-110H7;0.862394!10798-110I6;0.668776!10786-110H3;0.670578!10591-108D6;0.311436!10593-108D8;0.690771!10590-108D5;0.284802!10026-101D8;0.591752!10096-102C6;0.932592!10168-103B6;0.217909!10154-103A1;0.646295!10209-103G2;0.635088!10061-101H7;0.470803!10027-101D9;0.134616!10043-101F7;0.303861!10783-110G9;0.168024!10028-101E1;0.847257!10060-101H6;0.677883!10203-103F5;0.444552!10059-101H5;0.688101!10047-101G2;0.592969!10029-101E2;0.462427!10058-101H4;0.494323!10418-106C4;0.267276!10492-107B6;0.0167525!10694-109G1;0.761335!10797-110I5;0.334346!10057-101H3;0.42113!10100-102D1;0.805985!10055-101H1;0.354222!10204-103F6;0.400157!10191-103E2;0.543479!10563-108A5;0.175718
|name=CTTCTTTCC,motif732,CNhs12056,T:1292.0(46.06%),B:25157.4(35.72%),P:1e-28
|name=CTTCTTTCC,motif732,CNhs12056,T:1292.0(46.06%),B:25157.4(35.72%),P:1e-28
|tomtom_result=YRR1#MA0439.1;0;0.00265153;1.26213;1;9;CTTCTTTCC;CTTATCTCCGC;+!EWSR1-FLI1#MA0149.1;1;0.00356546;1.69716;1;9;CTTCTTTCC;CCTTCCTTCCTTCCTTCC;-!Trl#MA0205.1;0;0.00538389;2.56273;1;9;CTTCTTTCC;TTGCTCTCTC;+!SFL1#MA0377.1;8;0.00585719;2.78802;1;9;CTTCTTTCC;TTTTATTTCTTCTATTCTCTA;-!Klf4#MA0039.1;1;0.00669358;3.18614;1;9;CTTCTTTCC;CCTTCCTTTA;-!RME1#MA0370.1;0;0.0101749;4.84324;1;9;CTTCTTTCC;TTCCTTTGGA;-!id1#MA0120.1;1;0.0111585;5.31145;1;9;CTTCTTTCC;TTTTCCTTTTCG;+!AZF1#MA0277.1;0;0.0153878;7.3246;1;9;CTTCTTTCC;TTTCTTTTT;-
}}
}}

Latest revision as of 14:07, 7 September 2012

Full Name: CTTCTTTCC,motif732,CNhs12056,T:1292.0(46.06%),B:25157.4(35.72%),P:1e-28

Motif matrix
POACGT
1167.96779.07638.76306.204
21.292195.092201.552894.064
318.088271.3289.148913.444
41.292881.144111.112298.452
543.928200.261.2921046.52
6170.544308.788125.324687.344
75.1681.292227.3921058.148
8129.2904.4241.60416.796
9213.18631.788240.312206.72

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
YRR1#MA0439.100.002651531.2621319CTTCTTTCCCTTATCTCCGC+
EWSR1-FLI1#MA0149.110.003565461.6971619CTTCTTTCCCCTTCCTTCCTTCCTTCC-
Trl#MA0205.100.005383892.5627319CTTCTTTCCTTGCTCTCTC+
SFL1#MA0377.180.005857192.7880219CTTCTTTCCTTTTATTTCTTCTATTCTCTA-
Klf4#MA0039.110.006693583.1861419CTTCTTTCCCCTTCCTTTA-
RME1#MA0370.100.01017494.8432419CTTCTTTCCTTCCTTTGGA-
id1#MA0120.110.01115855.3114519CTTCTTTCCTTTTCCTTTTCG+
AZF1#MA0277.100.01538787.324619CTTCTTTCCTTTCTTTTT-
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