MacroAPE 1083:12-GYTTGWTATTG: Difference between revisions
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(Created page with "{{Macroape_1083
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0828-111C9;0.580982!10788-110H5;0.210888!10792-110H9;0.0451881!10765-110E9;0.458172!10829-111D1;0.51909!10830-111D2;0.689014!10831-111D3;0.0310514!10832-111D4;0.123626!10833-111D5;0.411893!10764-110E8;0.228817!10770-110F5;0.197674!10399-106A3;0.497448!10400-106A4;0.234758!10405-106A9;0.283711!10834-111D6;0.28478!10835-111D7;0.281261!10836-111D8;0.555377!10837-111D9;0.0778647!10699-109G6;0.165596!10802-111A1;0.0612463!10796-110I4;0.0813224!10010-101C1;0.279459!10810-111A9;0.718719!10421-106C7;0.874483!10708-109H6;0.880724!12235-129G3;0.894006!12236-129G4;0.763622!12237-129G5;0.717845!10167-103B5;0.855041!10151-102I7;0.888686!10428-106D5;0.855239!10795-110I3;0.709688!10805-111A4;0.066711!10052-101G7;0.595494!10189-103D9;0.696279!10589-108D4;0.709745!10425-106D2;0.359801!10427-106D4;0.0688103!10702-109G9;0.48383!10432-106D9;0.245387!10496-107C1;0.226359!10718-109I7;0.39424!10011-101C2;0.18283!10053-101G8;0.949498!10686-109F2;0.355877!10084-102B3;0.917393!10012-101C3;0.883233!10085-102B4;0.853243!10482-107A5;0.93299!10419-106C5;0.202217!10080-102A8;0.81817!10760-110E4;0.648845!10709-109H7;0.365877!10710-109H8;0.440662!10703-109H1;0.776212!10719-109I8;0.261775!10642-109A3;0.446288!10177-103C6;0.854177!10164-103B2;0.670488!10173-103C2;0.659257!10166-103B4;0.658889!10083-102B2;0.846424!10188-103D8;0.901835!10552-107I3;0.910836!10553-107I4;0.859592!10013-101C4;0.152592!10536-107G5;0.978415!10618-108G6;0.895573!10423-106C9;0.621578!10785-110H2;0.451612!12238-129G6;0.510118!12239-129G7;0.488784!12240-129G8;0.118113!10416-106C2;0.819437!10801-110I9;0.734301!10766-110F1;0.708052!10824-111C5;0.364769!10825-111C6;0.167371!10826-111C7;0.0900566!10454-106G4;0.143246!10409-106B4;0.389162!10638-108I8;0.133949!10636-108I6;0.6205!10513-107D9;0.346846!10420-106C6;0.843893!10082-102B1;0.7671!10014-101C5;0.88234!10070-101I7;0.544315!10452-106G2;0.636242!10453-106G3;0.641492!10449-106F8;0.837779!10042-101F6;0.718495!10069-101I6;0.730729!10193-103E4;0.642635!10631-108I1;0.621712!10438-106E6;0.322117!10488-107B2;0.330436!10196-103E7;0.348523!10071-101I8;0.68429!10071-101I8;0.725661!10041-101F5;0.286071!10451-106G1;0.551144!10450-106F9;0.83826!10604-108F1;0.500551!10605-108F2;0.138627!10606-108F3;0.160892!10603-108E9;0.224926!10497-107C2;0.286272!10448-106F7;0.682135!10643-109A4;0.609218!10426-106D3;0.157922!10431-106D8;0.256962!10197-103E8;0.247624!10443-106F2;0.541826!10815-111B5;0.377161!10816-111B6;0.496222!10817-111B7;0.404272!10015-101C6;0.431375!10410-106B5;0.731735!10054-101G9;0.869497!10758-110E2;0.259089!10711-109H9;0.408288!10040-101F4;0.926547!10470-106I2;0.870344!10415-106C1;0.462209!10198-103E9;0.502658!10614-108G2;0.844691!10612-108F9;0.107128!10549-107H9;0.749448!10615-108G3;0.934544!10487-107B1;0.360731!10433-106E1;0.20591!10688-109F4;0.332934!10444-106F3;0.810273!10444-106F3;0.656801!10485-107A8;0.395728!10413-106B8;0.761544!10175-103C4;0.285392!10161-103A8;0.717608!12131-128D7;0.502741!10624-108H3;0.134863!10712-109I1;0.414043!10205-103F7;0.308758!10206-103F8;0.945692!10207-103F9;0.998614!10050-101G5;0.819342!10051-101G6;0.453568!10016-101C7;0.682105!10046-101G1;0.947482!10778-110G4;0.900486!10633-108I3;0.398006!10818-111B8;0.157381!10819-111B9;0.632258!10820-111C1;0.645749!10484-107A7;0.635623!10808-111A7;0.281229!10169-103B7;0.517149!10153-102I9;0.892341!13425-144D5;0.556359!13433-144E4;0.120829!13437-144E8;0.142358!11904-125F5;0.436244!11905-125F6;0.582527!10039-101F3;0.702867!10791-110H8;0.941598!10017-101C8;0.467484!10045-101F9;0.833547!10509-107D5;0.806684!10839-111E2;0.880443!10692-109F8;0.829045!10079-102A7;0.216044!10078-102A6;0.606978!10721-110A1;0.58847!10569-108B2;0.670485!10570-108B3;0.681976!10571-108B4;0.195332!10647-109A8;0.370207!10752-110D5;0.041487!10782-110G8;0.259968!10726-110A6;0.23408!10018-101C9;0.788549!10086-102B5;0.801554!10182-103D2;0.106013!10165-103B3;0.942763!10499-107C4;0.885921!10408-106B3;0.315414!10019-101D1;0.933413!10068-101I5;0.55713!10075-102A3;0.115815!10077-102A5;0.737475!10727-110A7;0.406018!10775-110G1;0.621211!10412-106B7;0.463865!12231-129F8;0.51413!12232-129F9;0.838883!12233-129G1;0.451508!12234-129G2;0.797341!10414-106B9;0.944467!10170-103B8;0.704604!10183-103D3;0.860987!10150-102I6;0.680542!10174-103C3;0.541703!10155-103A2;0.879895!10038-101F2;0.720998!10838-111E1;0.88434!10759-110E3;0.702229!10514-107E1;0.975784!10465-106H6;0.762272!10691-109F7;0.666826!10843-111E6;0.144003!10844-111E7;0.924141!11747-123G1;0.917001!11748-123G2;0.459695!11749-123G3;0.237091!11750-123G4;0.635731!11751-123G5;0.617771!11840-124H4;0.485659!11752-123G6;0.932069!11753-123G7;0.395256!11754-123G8;0.575737!11755-123G9;0.839766!11756-123H1;0.559394!11833-124G6;0.65125!11760-123H5;0.671416!11836-124G9;0.507181!11758-123H3;0.599611!11835-124G8;0.25064!11762-123H7;0.21464!11838-124H2;0.373462!11757-123H2;0.118734!11759-123H4;0.238003!11761-123H6;0.632092!11842-124H6;0.2222!11837-124H1;0.462715!10568-108B1;0.300055!13230-141I8;0.892543!13231-141I9;0.743559!10696-109G3;0.501587!10493-107B7;0.883549!10494-107B8;0.868364!10850-111F4;0.605607!10851-111F5;0.795349!10852-111F6;0.335249!10853-111F7;0.0843591!10854-111F8;0.827911!10855-111F9;0.717425!10856-111G1;0.203584!10847-111F1;0.164475!10846-111E9;0.861818!10848-111F2;0.794786!10845-111E8;0.702865!10857-111G2;0.352426!10858-111G3;0.524528!10156-103A3;0.315598!11901-125F2;0.600388!11902-125F3;0.722507!11903-125F4;0.504065!10689-109F5;0.971946!10648-109A9;0.621764!10784-110H1;0.733075!10744-110C6;0.742377!10772-110F7;0.914194!10474-106I6;0.753387!10600-108E6;0.205477!10684-109E9;0.611068!12226-129F3;0.442945!12227-129F4;0.00544025!10508-107D4;0.645269!10539-107G8;0.522252!10607-108F4;0.386631!10555-107I6;0.423678!10774-110F9;0.38156!10637-108I7;0.794779!10663-109C6;0.516596!10728-110A8;0.526495!10729-110A9;0.893644!10430-106D7;0.366745!10730-110B1;0.1691!10813-111B3;0.5281!10812-111B2;0.261615!10037-101F1;0.439545!10172-103C1;0.796728!10163-103B1;0.618157!10076-102A4;0.62815!10073-102A1;0.839354!10036-101E9;0.431474!10195-103E6;0.99267!10277-104E7;0.72169!10434-106E2;0.1675!10550-107I1;0.788462!10545-107H5;0.602901!10544-107H4;0.884543!10704-109H2;0.942883!10510-107D6;0.607479!10558-107I9;0.229495!10020-101D2;0.624127!10732-110B3;0.948999!10049-101G4;0.441848!10698-109G5;0.889824!10437-106E5;0.615805!10417-106C3;0.660622!10035-101E8;0.819711!10171-103B9;0.994063!10157-103A4;0.855699!10034-101E7;0.751169!10072-101I9;0.952744!10199-103F1;0.381787!10200-103F2;0.394631!10697-109G4;0.309425!10723-110A3;0.0916719!10179-103C8;0.0525259!10160-103A7;0.761856!10180-103C9;0.714057!10162-103A9;0.617445!10021-101D3;0.653496!10840-111E3;0.877845!10706-109H4;0.244234!10033-101E6;0.395317!10032-101E5;0.73672!10490-107B4;0.948913!10439-106E7;0.0630307!10022-101D4;0.768309!10176-103C5;0.911978!10469-106I1;0.856509!10067-101I4;0.609017!10411-106B6;0.42167!10471-106I3;0.784803!10030-101E3;0.321222!10475-106I7;0.713893!10787-110H4;0.5737!10477-106I9;0.808799!10695-109G2;0.875085!11771-123I7;0.662662!11772-123I8;0.786951!11773-123I9;0.965014!10093-102C3;0.876689!10442-106F1;0.355509!10442-106F1;0.355075!10201-103F3;0.129158!10639-108I9;0.515792!11843-124H7;0.41347!11841-124H5;0.951565!10693-109F9;0.951834!10436-106E4;0.700976!10483-107A6;0.354848!10282-104F3;0.565596!10023-101D5;0.904859!10066-101I3;0.65817!10065-101I2;0.204595!10800-110I8;0.439011!10610-108F7;0.383241!10841-111E4;0.985052!10541-107H1;0.730938!10842-111E5;0.505568!10562-108A4;0.948606!10024-101D6;0.291492!10064-101I1;0.908837!10609-108F6;0.860605!10048-101G3;0.340889!10781-110G7;0.809275!10181-103D1;0.0490882!10159-103A6;0.988403!10056-101H2;0.945158!10737-110B8;0.756265!10025-101D7;0.246155!10044-101F8;0.723735!10424-106D1;0.210875!10463-106H4;0.222077!10616-108G4;0.378609!10486-107A9;0.875469!10062-101H8;0.457998!10202-103F4;0.589391!10158-103A5;0.334988!10441-106E9;0.621278!10031-101E4;0.879398!10063-101H9;0.917177!10063-101H9;0.270202!11763-123H8;0.497456!11765-123I1;0.907498!11768-123I4;0.888181!10807-111A6;0.675498!10790-110H7;0.260481!10798-110I6;0.994085!10786-110H3;0.897177!10591-108D6;0.846172!10593-108D8;0.863784!10590-108D5;0.635773!10026-101D8;0.909973!10096-102C6;0.733793!10168-103B6;0.528779!10154-103A1;0.851425!10209-103G2;0.566322!10061-101H7;0.261296!10027-101D9;0.307596!10043-101F7;0.232001!10783-110G9;0.392078!10028-101E1;0.373982!10060-101H6;0.399854!10203-103F5;0.293824!10059-101H5;0.340334!10047-101G2;0.177936!10029-101E2;0.166514!10058-101H4;0.824608!10418-106C4;0.444549!10492-107B6;0.766921!10694-109G1;0.777152!10797-110I5;0.493974!10057-101H3;0.839057!10100-102D1;0.490959!10055-101H1;0.684499!10204-103F6;0.598639!10191-103E2;0.444265!10563-108A5;0.545508 | ||
|name=12-GYTTGWTATTG,CNhs12563,BestGuess:ARI5B_f1_HM09(0.72648803831284),T:2107.0(48.15%),B:17419.3(39.59%),P:1e-29 | |name=12-GYTTGWTATTG,CNhs12563,BestGuess:ARI5B_f1_HM09(0.72648803831284),T:2107.0(48.15%),B:17419.3(39.59%),P:1e-29 | ||
|tomtom_result=PEND#MA0127.1;0;0.00363986;1.73257;1;10;GTTTGTTATTG;ACTTCTTATT;+!HNF1B#MA0153.1;0;0.0105863;5.03906;1;11;GTTTGTTATTG;GTTAAATATTAA;-!Optix#MA0199.1;-3;0.0124424;5.92258;1;5;GTTTGTTATTG;TGATA;+!caup#MA0217.1;-3;0.0124424;5.92258;1;5;GTTTGTTATTG;TGTTA;-!hb#MA0049.1;-1;0.0148706;7.07841;1;10;GTTTGTTATTG;TTTTTTATGC;-!SPT23#MA0388.1;-2;0.0163748;7.79438;1;8;GTTTGTTATTG;TTGATTTC;-!HAP5#MA0316.1;2;0.0164413;7.82607;1;11;GTTTGTTATTG;TGGGATCTGATTGGT;+!CG4328#MA0182.1;-4;0.0179869;8.56176;1;7;GTTTGTTATTG;TTTATTA;+!AFT1#MA0269.1;-1;0.0184139;8.76501;1;10;GTTTGTTATTG;TTACATATTGCACCCGATTGG;+ | |||
}} | }} | ||
Latest revision as of 14:12, 7 September 2012
Full Name: 12-GYTTGWTATTG,CNhs12563,BestGuess:ARI5B_f1_HM09(0.72648803831284),T:2107.0(48.15%),B:17419.3(39.59%),P:1e-29
| Motif matrix | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Sample specificity
The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon
TomTom analysis
<br>Analyst: Michiel de Hoon and Hiroko Ohmiya
Target_ID | Optimal_offset | p-value | E-value | q-value | Overlap | Query consensus | Target consensus | Orientation |
|---|---|---|---|---|---|---|---|---|
| PEND#MA0127.1 | 0 | 0.00363986 | 1.73257 | 1 | 10 | GTTTGTTATTG | ACTTCTTATT | + |
| HNF1B#MA0153.1 | 0 | 0.0105863 | 5.03906 | 1 | 11 | GTTTGTTATTG | GTTAAATATTAA | - |
| Optix#MA0199.1 | -3 | 0.0124424 | 5.92258 | 1 | 5 | GTTTGTTATTG | TGATA | + |
| caup#MA0217.1 | -3 | 0.0124424 | 5.92258 | 1 | 5 | GTTTGTTATTG | TGTTA | - |
| hb#MA0049.1 | -1 | 0.0148706 | 7.07841 | 1 | 10 | GTTTGTTATTG | TTTTTTATGC | - |
| SPT23#MA0388.1 | -2 | 0.0163748 | 7.79438 | 1 | 8 | GTTTGTTATTG | TTGATTTC | - |
| HAP5#MA0316.1 | 2 | 0.0164413 | 7.82607 | 1 | 11 | GTTTGTTATTG | TGGGATCTGATTGGT | + |
| CG4328#MA0182.1 | -4 | 0.0179869 | 8.56176 | 1 | 7 | GTTTGTTATTG | TTTATTA | + |
| AFT1#MA0269.1 | -1 | 0.0184139 | 8.76501 | 1 | 10 | GTTTGTTATTG | TTACATATTGCACCCGATTGG | + |
