MacroAPE 1083:Motif CGNTGA: Difference between revisions
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0850-111F4;0.0876155!10851-111F5;0.46621!10852-111F6;0.467648!10853-111F7;0.169452!10854-111F8;0.323923!10855-111F9;0.729154!10856-111G1;0.493174!10847-111F1;0.446358!10846-111E9;0.247435!10848-111F2;0.722905!10845-111E8;0.68018!10857-111G2;0.872741!10858-111G3;0.493957!10156-103A3;0.582477!11901-125F2;0.584577!11902-125F3;0.895593!11903-125F4;0.750014!10689-109F5;0.934938!10648-109A9;0.518266!10784-110H1;0.530334!10744-110C6;0.191434!10772-110F7;0.30507!10474-106I6;0.885052!10600-108E6;0.886029!10684-109E9;0.0829044!12226-129F3;0.342243!12227-129F4;0.987445!10508-107D4;0.866808!10539-107G8;0.671738!10607-108F4;0.400922!10555-107I6;0.994046!10774-110F9;0.758503!10637-108I7;0.824558!10663-109C6;0.73436!10728-110A8;0.747683!10729-110A9;0.974123!10430-106D7;0.331358!10730-110B1;0.97382!10813-111B3;0.747127!10812-111B2;0.281677!10037-101F1;0.541691!10172-103C1;0.464248!10163-103B1;0.591784!10076-102A4;0.623056!10073-102A1;0.571247!10036-101E9;0.585491!10195-103E6;0.687918!10277-104E7;0.556097!10434-106E2;0.408308!10550-107I1;0.244932!10545-107H5;0.81933!10544-107H4;0.93806!10704-109H2;0.724601!10510-107D6;0.128005!10558-107I9;0.439074!10020-101D2;0.222504!10732-110B3;0.30235!10049-101G4;0.566173!10698-109G5;0.503418!10437-106E5;0.568975!10417-106C3;0.125942!10035-101E8;0.274094!10171-103B9;0.603211!10157-103A4;0.478019!10034-101E7;0.602249!10072-101I9;0.62309!10199-103F1;0.581768!10200-103F2;0.497914!10697-109G4;0.314299!10723-110A3;0.864092!10179-103C8;0.790951!10160-103A7;0.550002!10180-103C9;0.344744!10162-103A9;0.750086!10021-101D3;0.608861!10840-111E3;0.874434!10706-109H4;0.91873!10033-101E6;0.24117!10032-101E5;0.428391!10490-107B4;0.629611!10439-106E7;0.36414!10022-101D4;0.834372!10176-103C5;0.294133!10469-106I1;0.471981!10067-101I4;0.24414!10411-106B6;0.314449!10471-106I3;0.65828!10030-101E3;0.454652!10475-106I7;0.364731!10787-110H4;0.881867!10477-106I9;0.407362!10695-109G2;0.689871!11771-123I7;0.997784!11772-123I8;0.275647!11773-123I9;0.323958!10093-102C3;0.457955!10442-106F1;0.354189!10442-106F1;0.770734!10201-103F3;0.73383!10639-108I9;0.190708!11843-124H7;0.19519!11841-124H5;0.38726!10693-109F9;0.561607!10436-106E4;0.606052!10483-107A6;0.571806!10282-104F3;0.757636!10023-101D5;0.185936!10066-101I3;0.368303!10065-101I2;0.45131!10800-110I8;0.398338!10610-108F7;0.77224!10841-111E4;0.497181!10541-107H1;0.976598!10842-111E5;0.83118!10562-108A4;0.945189!10024-101D6;0.998755!10064-101I1;0.247312!10609-108F6;0.202827!10048-101G3;0.545894!10781-110G7;0.549603!10181-103D1;0.742516!10159-103A6;0.382366!10056-101H2;0.371678!10737-110B8;0.445355!10025-101D7;0.310778!10044-101F8;0.125767!10424-106D1;0.430761!10463-106H4;0.972545!10616-108G4;0.649488!10486-107A9;0.451215!10062-101H8;0.918692!10202-103F4;0.61346!10158-103A5;0.39137!10441-106E9;0.487863!10031-101E4;0.58991!10063-101H9;0.597672!10063-101H9;0.650789!11763-123H8;0.250833!11765-123I1;0.750487!11768-123I4;0.848345!10807-111A6;0.831983!10790-110H7;0.580501!10798-110I6;0.94407!10786-110H3;0.665448!10591-108D6;0.239059!10593-108D8;0.360133!10590-108D5;0.198211!10026-101D8;0.404977!10096-102C6;0.43012!10168-103B6;0.853969!10154-103A1;0.411417!10209-103G2;0.44644!10061-101H7;0.326509!10027-101D9;0.489485!10043-101F7;0.416755!10783-110G9;0.53588!10028-101E1;0.915968!10060-101H6;0.420056!10203-103F5;0.635454!10059-101H5;0.379873!10047-101G2;0.4242!10029-101E2;0.270007!10058-101H4;0.317728!10418-106C4;0.493339!10492-107B6;0.329104!10694-109G1;0.824454!10797-110I5;0.742875!10057-101H3;0.471303!10100-102D1;0.578489!10055-101H1;0.324273!10204-103F6;0.559654!10191-103E2;0.627931!10563-108A5;0.327115 | ||
|name=motif_CGNTGA | |name=motif_CGNTGA | ||
|tomtom_result=RXRA::VDR#MA0074.1;6;0.00269453;1.2826;1;6;CGATGA;TGAACCCGATGACCC;-!TOD6#MA0350.1;6;0.00487952;2.32265;1;6;CGATGA;AAAACGCGATGAGCTGTGCCT;-!DOT6#MA0351.1;6;0.00487952;2.32265;1;6;CGATGA;AGGATGCGATGAGGTGCAGAA;-!RXR::RAR_DR5#MA0159.1;8;0.00669782;3.18816;1;6;CGATGA;TGACCTCTCCGTGACCT;-!CREB1#MA0018.1;2;0.0115307;5.48864;1;6;CGATGA;CCTGGTGACGTC;+!Gfi#MA0038.1;0;0.014375;6.84251;1;6;CGATGA;CAGTGATTTG;-!PPARG#MA0066.1;8;0.0164397;7.82531;1;6;CGATGA;GTAGGTCACGGTGACCTACT;+!ESR1#MA0112.1;7;0.0189315;9.01139;1;6;CGATGA;GGGGTCACGGTGACCTGG;-!ESR2#MA0258.1;8;0.0204809;9.74889;1;6;CGATGA;CAAGGTCACGGTGACCTG;+!PPARG::RXRA#MA0065.1;0;0.0209655;9.97959;1;6;CGATGA;AGATGACCTTTGACCCCTGA;- | |||
}} | }} |
Latest revision as of 14:15, 7 September 2012
Full Name: motif_CGNTGA
Motif matrix | |||||||||||||||||||||||||||||||||||
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Sample specificity
The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon
TomTom analysis
<br>Analyst: Michiel de Hoon and Hiroko Ohmiya
Target_ID | Optimal_offset | p-value | E-value | q-value | Overlap | Query consensus | Target consensus | Orientation |
---|---|---|---|---|---|---|---|---|
RXRA::VDR#MA0074.1 | 6 | 0.00269453 | 1.2826 | 1 | 6 | CGATGA | TGAACCCGATGACCC | - |
TOD6#MA0350.1 | 6 | 0.00487952 | 2.32265 | 1 | 6 | CGATGA | AAAACGCGATGAGCTGTGCCT | - |
DOT6#MA0351.1 | 6 | 0.00487952 | 2.32265 | 1 | 6 | CGATGA | AGGATGCGATGAGGTGCAGAA | - |
RXR::RAR_DR5#MA0159.1 | 8 | 0.00669782 | 3.18816 | 1 | 6 | CGATGA | TGACCTCTCCGTGACCT | - |
CREB1#MA0018.1 | 2 | 0.0115307 | 5.48864 | 1 | 6 | CGATGA | CCTGGTGACGTC | + |
Gfi#MA0038.1 | 0 | 0.014375 | 6.84251 | 1 | 6 | CGATGA | CAGTGATTTG | - |
PPARG#MA0066.1 | 8 | 0.0164397 | 7.82531 | 1 | 6 | CGATGA | GTAGGTCACGGTGACCTACT | + |
ESR1#MA0112.1 | 7 | 0.0189315 | 9.01139 | 1 | 6 | CGATGA | GGGGTCACGGTGACCTGG | - |
ESR2#MA0258.1 | 8 | 0.0204809 | 9.74889 | 1 | 6 | CGATGA | CAAGGTCACGGTGACCTG | + |
PPARG::RXRA#MA0065.1 | 0 | 0.0209655 | 9.97959 | 1 | 6 | CGATGA | AGATGACCTTTGACCCCTGA | - |