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MacroAPE 1083:AAAARAAG,motif736: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;1382.6;1.55;164.3;1.55!2;1128.4;1.55;418.5;1.55!3;1525.2;21.7;1.55;1.55!4;1545.35;1.55;1.55;1.55!5;762.6;1.55;784.3;1.55!6;1007.5;1.55;539.4...")
 
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17882!10828-111C9;0.770588!10788-110H5;0.867793!10792-110H9;0.41494!10765-110E9;0.791783!10829-111D1;0.883579!10830-111D2;0.164852!10831-111D3;0.632!10832-111D4;0.543294!10833-111D5;0.692155!10764-110E8;0.693424!10770-110F5;0.837558!10399-106A3;0.848032!10400-106A4;0.50364!10405-106A9;0.523748!10834-111D6;0.616773!10835-111D7;0.854767!10836-111D8;0.00354232!10837-111D9;0.235209!10699-109G6;0.267022!10802-111A1;0.112502!10796-110I4;0.189044!10010-101C1;0.254768!10810-111A9;0.0273629!10421-106C7;0.234403!10708-109H6;0.332802!12235-129G3;0.20288!12236-129G4;0.579485!12237-129G5;0.448412!10167-103B5;0.928403!10151-102I7;0.295159!10428-106D5;0.176183!10795-110I3;0.398457!10805-111A4;0.220197!10052-101G7;0.117579!10189-103D9;0.0765119!10589-108D4;0.0978027!10425-106D2;0.0143878!10427-106D4;0.379716!10702-109G9;0.743301!10432-106D9;0.961931!10496-107C1;0.864312!10718-109I7;0.122043!10011-101C2;0.702489!10053-101G8;0.255133!10686-109F2;0.360511!10084-102B3;0.620738!10012-101C3;0.29435!10085-102B4;0.432274!10482-107A5;0.665905!10419-106C5;0.0602953!10080-102A8;0.0822178!10760-110E4;0.0112842!10709-109H7;0.250193!10710-109H8;0.81028!10703-109H1;0.116278!10719-109I8;0.158093!10642-109A3;0.07799!10177-103C6;0.364883!10164-103B2;0.401252!10173-103C2;0.257628!10166-103B4;0.81726!10083-102B2;0.684717!10188-103D8;0.906148!10552-107I3;0.17399!10553-107I4;0.0142375!10013-101C4;0.132916!10536-107G5;0.0555122!10618-108G6;0.942689!10423-106C9;0.138779!10785-110H2;0.0859969!12238-129G6;0.0189804!12239-129G7;0.234421!12240-129G8;0.271189!10416-106C2;0.220257!10801-110I9;0.0901653!10766-110F1;0.444475!10824-111C5;0.637223!10825-111C6;0.0788895!10826-111C7;0.075621!10454-106G4;0.116102!10409-106B4;0.080151!10638-108I8;0.599744!10636-108I6;0.0620972!10513-107D9;0.539891!10420-106C6;0.209861!10082-102B1;0.0529425!10014-101C5;0.858945!10070-101I7;0.395541!10452-106G2;0.0942094!10453-106G3;0.374001!10449-106F8;0.32515!10042-101F6;0.262951!10069-101I6;0.283374!10193-103E4;0.0895844!10631-108I1;0.393064!10438-106E6;0.142603!10488-107B2;0.559616!10196-103E7;0.109493!10071-101I8;0.686837!10071-101I8;0.0111603!10041-101F5;0.997219!10451-106G1;4.28293e-05!10450-106F9;0.00464471!10604-108F1;0.0631845!10605-108F2;0.247321!10606-108F3;0.240248!10603-108E9;0.364518!10497-107C2;0.119653!10448-106F7;0.0903341!10643-109A4;0.068291!10426-106D3;0.058838!10431-106D8;0.23368!10197-103E8;0.00137134!10443-106F2;0.0455009!10815-111B5;0.624467!10816-111B6;0.00481428!10817-111B7;0.0148347!10015-101C6;0.00324451!10410-106B5;0.313869!10054-101G9;0.383856!10758-110E2;0.399867!10711-109H9;0.018332!10040-101F4;0.204221!10470-106I2;0.506318!10415-106C1;0.35109!10198-103E9;0.868537!10614-108G2;0.0818788!10612-108F9;0.865403!10549-107H9;0.305502!10615-108G3;0.0796084!10487-107B1;0.0111274!10433-106E1;0.023339!10688-109F4;0.118412!10444-106F3;0.0780052!10444-106F3;0.384663!10485-107A8;0.437384!10413-106B8;0.804399!10175-103C4;0.916068!10161-103A8;0.337145!12131-128D7;0.0941698!10624-108H3;0.349875!10712-109I1;0.324487!10205-103F7;0.657279!10206-103F8;0.00152106!10207-103F9;0.458302!10050-101G5;0.0182457!10051-101G6;0.620416!10016-101C7;0.489656!10046-101G1;0.0728149!10778-110G4;0.312277!10633-108I3;0.344535!10818-111B8;0.212788!10819-111B9;0.0875441!10820-111C1;0.0946275!10484-107A7;0.1124!10808-111A7;0.269114!10169-103B7;0.200002!10153-102I9;0.300284!13425-144D5;0.138073!13433-144E4;0.0939086!13437-144E8;0.0809045!11904-125F5;0.121344!11905-125F6;0.746765!10039-101F3;0.429336!10791-110H8;0.537737!10017-101C8;0.0829041!10045-101F9;0.327149!10509-107D5;0.644725!10839-111E2;0.348114!10692-109F8;0.160874!10079-102A7;0.508363!10078-102A6;0.0010916!10721-110A1;0.0774499!10569-108B2;0.0924926!10570-108B3;0.549843!10571-108B4;0.326564!10647-109A8;0.311477!10752-110D5;0.607467!10782-110G8;0.467743!10726-110A6;0.807437!10018-101C9;0.941355!10086-102B5;0.0771527!10182-103D2;0.892326!10165-103B3;0.348168!10499-107C4;0.0988971!10408-106B3;0.0714998!10019-101D1;0.614072!10068-101I5;0.0485217!10075-102A3;0.00788836!10077-102A5;0.0132567!10727-110A7;0.0330682!10775-110G1;0.294505!10412-106B7;0.718326!12231-129F8;0.117719!12232-129F9;0.0350194!12233-129G1;0.0529532!12234-129G2;0.0416316!10414-106B9;0.0573544!10170-103B8;0.645124!10183-103D3;0.481796!10150-102I6;0.588675!10174-103C3;0.222203!10155-103A2;0.150135!10038-101F2;0.0986021!10838-111E1;0.215763!10759-110E3;0.0937401!10514-107E1;0.144147!10465-106H6;0.812708!10691-109F7;0.403021!10843-111E6;0.298824!10844-111E7;0.0712956!11747-123G1;0.457709!11748-123G2;0.267653!11749-123G3;0.684081!11750-123G4;0.534543!11751-123G5;0.962247!11840-124H4;0.913861!11752-123G6;0.975696!11753-123G7;0.950053!11754-123G8;0.658606!11755-123G9;0.975942!11756-123H1;0.51535!11833-124G6;0.970829!11760-123H5;0.557488!11836-124G9;0.767887!11758-123H3;0.821465!11835-124G8;0.955161!11762-123H7;0.987955!11838-124H2;0.515791!11757-123H2;0.735757!11759-123H4;0.8881!11761-123H6;0.957149!11842-124H6;0.622499!11837-124H1;0.723575!10568-108B1;0.885846!13230-141I8;0.656908!13231-141I9;0.450736!10696-109G3;0.639384!10493-107B7;0.527759!10494-107B8;0.811265!10850-111F4;0.110927!10851-111F5;0.187107!10852-111F6;0.966844!10853-111F7;0.601323!10854-111F8;0.602007!10855-111F9;0.366767!10856-111G1;0.500539!10847-111F1;0.776305!10846-111E9;0.260898!10848-111F2;0.260193!10845-111E8;0.757278!10857-111G2;0.0724095!10858-111G3;0.325492!10156-103A3;0.596325!11901-125F2;0.175911!11902-125F3;0.654166!11903-125F4;0.604892!10689-109F5;0.935989!10648-109A9;0.791163!10784-110H1;0.155795!10744-110C6;0.532795!10772-110F7;0.929409!10474-106I6;0.428252!10600-108E6;0.976106!10684-109E9;0.520734!12226-129F3;0.179561!12227-129F4;0.0482127!10508-107D4;0.0895243!10539-107G8;0.249001!10607-108F4;0.354551!10555-107I6;0.0126253!10774-110F9;0.276224!10637-108I7;0.000308014!10663-109C6;0.00878649!10728-110A8;0.0210724!10729-110A9;0.0078124!10430-106D7;0.928404!10730-110B1;0.373762!10813-111B3;0.109103!10812-111B2;0.88468!10037-101F1;0.98653!10172-103C1;0.442346!10163-103B1;0.651579!10076-102A4;0.165355!10073-102A1;0.533342!10036-101E9;0.883278!10195-103E6;0.607716!10277-104E7;0.513903!10434-106E2;0.183058!10550-107I1;0.071627!10545-107H5;0.240676!10544-107H4;0.0399306!10704-109H2;0.0346621!10510-107D6;0.48315!10558-107I9;0.0774725!10020-101D2;0.110703!10732-110B3;0.00772389!10049-101G4;0.91701!10698-109G5;0.571131!10437-106E5;0.08465!10417-106C3;0.298529!10035-101E8;0.8071!10171-103B9;0.551602!10157-103A4;0.400375!10034-101E7;0.228665!10072-101I9;0.446884!10199-103F1;0.949348!10200-103F2;0.0461317!10697-109G4;0.180121!10723-110A3;0.567926!10179-103C8;0.785704!10160-103A7;0.130626!10180-103C9;0.179939!10162-103A9;0.440655!10021-101D3;0.229006!10840-111E3;0.247801!10706-109H4;0.763719!10033-101E6;0.307463!10032-101E5;0.398658!10490-107B4;0.645414!10439-106E7;0.00279306!10022-101D4;0.249457!10176-103C5;0.240979!10469-106I1;0.536171!10067-101I4;0.0518632!10411-106B6;0.288549!10471-106I3;0.0299411!10030-101E3;0.17194!10475-106I7;0.175012!10787-110H4;0.131167!10477-106I9;0.17455!10695-109G2;0.317142!11771-123I7;0.517696!11772-123I8;0.110442!11773-123I9;0.38678!10093-102C3;0.525114!10442-106F1;0.082015!10442-106F1;0.192479!10201-103F3;0.238716!10639-108I9;0.551834!11843-124H7;0.98175!11841-124H5;0.319586!10693-109F9;0.258243!10436-106E4;0.266599!10483-107A6;0.198269!10282-104F3;0.0977222!10023-101D5;0.727329!10066-101I3;0.804092!10065-101I2;0.965222!10800-110I8;0.249012!10610-108F7;0.518959!10841-111E4;0.284947!10541-107H1;0.351471!10842-111E5;0.212513!10562-108A4;0.173363!10024-101D6;0.857172!10064-101I1;0.395766!10609-108F6;0.363101!10048-101G3;0.716614!10781-110G7;0.614261!10181-103D1;0.866231!10159-103A6;0.136088!10056-101H2;0.0770653!10737-110B8;0.348424!10025-101D7;0.382015!10044-101F8;0.044936!10424-106D1;0.00936054!10463-106H4;0.369789!10616-108G4;0.280506!10486-107A9;0.180873!10062-101H8;0.0643078!10202-103F4;0.517804!10158-103A5;0.0133632!10441-106E9;0.0761143!10031-101E4;0.321147!10063-101H9;0.555315!10063-101H9;0.955581!11763-123H8;0.103481!11765-123I1;0.548916!11768-123I4;0.809613!10807-111A6;0.316272!10790-110H7;0.0319863!10798-110I6;0.183308!10786-110H3;0.00161693!10591-108D6;0.294798!10593-108D8;0.101463!10590-108D5;0.0667822!10026-101D8;0.119397!10096-102C6;0.354001!10168-103B6;0.57941!10154-103A1;0.22668!10209-103G2;0.135353!10061-101H7;0.0779769!10027-101D9;0.439771!10043-101F7;0.311386!10783-110G9;0.08065!10028-101E1;0.570973!10060-101H6;0.307597!10203-103F5;0.23475!10059-101H5;0.438248!10047-101G2;0.691772!10029-101E2;0.146733!10058-101H4;0.00133719!10418-106C4;0.0341362!10492-107B6;0.707265!10694-109G1;0.00477765!10797-110I5;0.117855!10057-101H3;0.497311!10100-102D1;0.360797!10055-101H1;0.0324754!10204-103F6;0.12165!10191-103E2;0.034995!10563-108A5;0.00830844
|name=AAAARAAG,motif736,CNhs12620,T:1550.0(44.93%),B:26897.8(35.63%),P:1e-28
|name=AAAARAAG,motif736,CNhs12620,T:1550.0(44.93%),B:26897.8(35.63%),P:1e-28
|tomtom_result=Klf4#MA0039.1;1;0.00244155;1.16218;1;8;AAAAGAAG;TAAAGGAAGG;+!AZF1#MA0277.1;1;0.00294372;1.40121;1;8;AAAAGAAG;AAAAAGAAA;+!CUP2#MA0287.1;3;0.00730663;3.47795;1;8;AAAAGAAG;CAGCAAAAATG;+!PEND#MA0127.1;1;0.00735282;3.49994;1;8;AAAAGAAG;AATAAGAAGT;-!hb#MA0049.1;4;0.00782121;3.7229;1;6;AAAAGAAG;GCATAAAAAA;+!HMG-I/Y#MA0045.1;1;0.0143657;6.83808;1;8;AAAAGAAG;CAACAAATGGAAAAAC;+!TBP#MA0108.2;4;0.0162945;7.7562;1;8;AAAAGAAG;GTATAAAAGGCGGGG;+!TBP#MA0108.2;4;0.0172706;8.22079;1;8;AAAAGAAG;GTATAAAAGGCGGGG;+
}}
}}

Latest revision as of 14:16, 7 September 2012

Full Name: AAAARAAG,motif736,CNhs12620,T:1550.0(44.93%),B:26897.8(35.63%),P:1e-28

Motif matrix
POACGT
11382.61.55164.31.55
21128.41.55418.51.55
31525.221.71.551.55
41545.351.551.551.55
5762.61.55784.31.55
61007.51.55539.41.55
7903.651.551.55643.25
81.55426.251120.651.55

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
Klf4#MA0039.110.002441551.1621818AAAAGAAGTAAAGGAAGG+
AZF1#MA0277.110.002943721.4012118AAAAGAAGAAAAAGAAA+
CUP2#MA0287.130.007306633.4779518AAAAGAAGCAGCAAAAATG+
PEND#MA0127.110.007352823.4999418AAAAGAAGAATAAGAAGT-
hb#MA0049.140.007821213.722916AAAAGAAGGCATAAAAAA+
HMG-I/Y#MA0045.110.01436576.8380818AAAAGAAGCAACAAATGGAAAAAC+
TBP#MA0108.240.01629457.756218AAAAGAAGGTATAAAAGGCGGGG+
TBP#MA0108.240.01727068.2207918AAAAGAAGGTATAAAAGGCGGGG+
Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MacroAPE_1083:AAAARAAG,motif736&oldid=2134300"