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MacroAPE 1083:CNhs12345 bu f2: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;29.869105272382036;4.985858413477098;20.195341798126332;5.9496945160145405!2;16.915087285526784;1.709389447014745;34.10966303444656;8.265860...")
 
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9;0.524739!10788-110H5;0.25673!10792-110H9;0.238243!10765-110E9;0.131951!10829-111D1;0.410091!10830-111D2;0.264339!10831-111D3;0.039256!10832-111D4;0.289957!10833-111D5;0.418251!10764-110E8;0.378857!10770-110F5;0.463672!10399-106A3;0.151255!10400-106A4;0.163319!10405-106A9;0.0981547!10834-111D6;0.0859355!10835-111D7;0.465712!10836-111D8;0.534095!10837-111D9;0.78932!10699-109G6;0.41222!10802-111A1;0.113116!10796-110I4;0.434572!10010-101C1;0.249833!10810-111A9;0.86285!10421-106C7;0.576576!10708-109H6;0.567557!12235-129G3;0.458304!12236-129G4;0.469913!12237-129G5;0.554007!10167-103B5;0.473549!10151-102I7;0.68835!10428-106D5;0.557102!10795-110I3;0.21757!10805-111A4;0.35743!10052-101G7;0.500232!10189-103D9;0.517206!10589-108D4;0.562574!10425-106D2;0.263691!10427-106D4;0.92618!10702-109G9;0.555457!10432-106D9;0.179742!10496-107C1;0.826014!10718-109I7;0.349324!10011-101C2;0.410388!10053-101G8;0.499342!10686-109F2;0.457543!10084-102B3;0.857083!10012-101C3;0.929837!10085-102B4;0.664231!10482-107A5;0.786612!10419-106C5;0.222942!10080-102A8;0.380889!10760-110E4;0.887571!10709-109H7;0.464877!10710-109H8;0.666017!10703-109H1;0.027245!10719-109I8;0.579756!10642-109A3;0.106726!10177-103C6;0.213121!10164-103B2;0.420785!10173-103C2;0.470451!10166-103B4;0.96335!10083-102B2;0.796772!10188-103D8;0.98988!10552-107I3;0.651804!10553-107I4;0.419512!10013-101C4;0.825031!10536-107G5;0.753309!10618-108G6;0.0138488!10423-106C9;0.202087!10785-110H2;0.257352!12238-129G6;0.198908!12239-129G7;0.541581!12240-129G8;0.644754!10416-106C2;0.598156!10801-110I9;0.39158!10766-110F1;0.132435!10824-111C5;0.492167!10825-111C6;0.997738!10826-111C7;0.942328!10454-106G4;0.887214!10409-106B4;0.960856!10638-108I8;0.257031!10636-108I6;0.101045!10513-107D9;0.174751!10420-106C6;0.515064!10082-102B1;0.641663!10014-101C5;0.9224!10070-101I7;0.962951!10452-106G2;0.594844!10453-106G3;0.344381!10449-106F8;0.329557!10042-101F6;0.281909!10069-101I6;0.71536!10193-103E4;0.563582!10631-108I1;0.703484!10438-106E6;0.792371!10488-107B2;0.935195!10196-103E7;0.329745!10071-101I8;0.818853!10071-101I8;0.615208!10041-101F5;0.732856!10451-106G1;0.982083!10450-106F9;0.41605!10604-108F1;0.0799143!10605-108F2;0.234577!10606-108F3;0.352819!10603-108E9;0.15125!10497-107C2;0.341193!10448-106F7;0.153433!10643-109A4;0.161674!10426-106D3;0.52533!10431-106D8;0.718679!10197-103E8;0.37964!10443-106F2;0.71996!10815-111B5;0.321513!10816-111B6;0.277065!10817-111B7;0.26387!10015-101C6;0.279504!10410-106B5;0.3662!10054-101G9;0.0750198!10758-110E2;0.298989!10711-109H9;0.231217!10040-101F4;0.0579038!10470-106I2;0.813274!10415-106C1;0.0190592!10198-103E9;0.812555!10614-108G2;0.706813!10612-108F9;0.4779!10549-107H9;0.55334!10615-108G3;0.117038!10487-107B1;0.810304!10433-106E1;0.826036!10688-109F4;0.208196!10444-106F3;0.304124!10444-106F3;0.511785!10485-107A8;0.463801!10413-106B8;0.310966!10175-103C4;0.0528232!10161-103A8;0.655696!12131-128D7;0.7109!10624-108H3;0.15517!10712-109I1;0.993739!10205-103F7;0.700821!10206-103F8;0.686001!10207-103F9;0.698157!10050-101G5;0.994588!10051-101G6;0.506536!10016-101C7;0.706827!10046-101G1;0.840594!10778-110G4;0.983649!10633-108I3;0.415283!10818-111B8;0.0180753!10819-111B9;0.14547!10820-111C1;0.133816!10484-107A7;0.136043!10808-111A7;0.21809!10169-103B7;0.38299!10153-102I9;0.597888!13425-144D5;0.646136!13433-144E4;0.608622!13437-144E8;0.788773!11904-125F5;0.863098!11905-125F6;0.504564!10039-101F3;0.672194!10791-110H8;0.745279!10017-101C8;0.573014!10045-101F9;0.67929!10509-107D5;0.702993!10839-111E2;0.210312!10692-109F8;0.874895!10079-102A7;0.539624!10078-102A6;0.848913!10721-110A1;0.901325!10569-108B2;0.616977!10570-108B3;0.325931!10571-108B4;0.265656!10647-109A8;0.249175!10752-110D5;0.0116393!10782-110G8;0.481844!10726-110A6;0.949346!10018-101C9;0.0826189!10086-102B5;0.974851!10182-103D2;0.987744!10165-103B3;0.516868!10499-107C4;0.495128!10408-106B3;0.545193!10019-101D1;0.912798!10068-101I5;0.726144!10075-102A3;0.836141!10077-102A5;0.997904!10727-110A7;0.580369!10775-110G1;0.955359!10412-106B7;0.794107!12231-129F8;0.74756!12232-129F9;0.403715!12233-129G1;0.559776!12234-129G2;0.510896!10414-106B9;0.120373!10170-103B8;0.585769!10183-103D3;0.770636!10150-102I6;0.738658!10174-103C3;0.696569!10155-103A2;0.311357!10038-101F2;0.526287!10838-111E1;0.624396!10759-110E3;0.214802!10514-107E1;0.623864!10465-106H6;0.00582458!10691-109F7;0.0278974!10843-111E6;0.222838!10844-111E7;0.401439!11747-123G1;0.396235!11748-123G2;0.731987!11749-123G3;0.762155!11750-123G4;0.862869!11751-123G5;0.975621!11840-124H4;0.789365!11752-123G6;0.583718!11753-123G7;0.289163!11754-123G8;0.910481!11755-123G9;0.79589!11756-123H1;0.732228!11833-124G6;0.881732!11760-123H5;0.951218!11836-124G9;0.98412!11758-123H3;0.465985!11835-124G8;0.986727!11762-123H7;0.477177!11838-124H2;0.929858!11757-123H2;0.651505!11759-123H4;0.515456!11761-123H6;0.853293!11842-124H6;0.914437!11837-124H1;0.323581!10568-108B1;0.513534!13230-141I8;0.698539!13231-141I9;0.358689!10696-109G3;0.284006!10493-107B7;0.931012!10494-107B8;0.958379!10850-111F4;0.621772!10851-111F5;0.520016!10852-111F6;0.919971!10853-111F7;0.770209!10854-111F8;0.81138!10855-111F9;0.369359!10856-111G1;0.290521!10847-111F1;0.560437!10846-111E9;0.165916!10848-111F2;0.641248!10845-111E8;0.951378!10857-111G2;0.00185993!10858-111G3;0.192048!10156-103A3;0.925021!11901-125F2;0.729636!11902-125F3;0.122735!11903-125F4;0.274282!10689-109F5;0.121914!10648-109A9;0.480008!10784-110H1;0.482842!10744-110C6;0.518573!10772-110F7;0.501588!10474-106I6;0.194873!10600-108E6;0.0844744!10684-109E9;0.682238!12226-129F3;0.24518!12227-129F4;0.187014!10508-107D4;0.133934!10539-107G8;0.422649!10607-108F4;0.108743!10555-107I6;0.526983!10774-110F9;0.255067!10637-108I7;0.26728!10663-109C6;0.142449!10728-110A8;0.359168!10729-110A9;0.222914!10430-106D7;0.172085!10730-110B1;0.413858!10813-111B3;0.80439!10812-111B2;0.729095!10037-101F1;0.679559!10172-103C1;0.678797!10163-103B1;0.718884!10076-102A4;0.834925!10073-102A1;0.74793!10036-101E9;0.731582!10195-103E6;0.731753!10277-104E7;0.778105!10434-106E2;0.674049!10550-107I1;0.591767!10545-107H5;0.86599!10544-107H4;0.727372!10704-109H2;0.984284!10510-107D6;0.307089!10558-107I9;0.153254!10020-101D2;0.980986!10732-110B3;0.898467!10049-101G4;0.57794!10698-109G5;0.25956!10437-106E5;0.0894936!10417-106C3;0.744912!10035-101E8;0.954707!10171-103B9;0.784769!10157-103A4;0.667873!10034-101E7;0.742699!10072-101I9;0.787508!10199-103F1;0.86921!10200-103F2;0.307921!10697-109G4;0.590698!10723-110A3;0.324921!10179-103C8;0.435071!10160-103A7;0.446478!10180-103C9;0.667806!10162-103A9;0.204498!10021-101D3;0.421965!10840-111E3;0.769151!10706-109H4;0.703504!10033-101E6;0.953323!10032-101E5;0.663472!10490-107B4;0.808223!10439-106E7;0.645827!10022-101D4;0.737335!10176-103C5;0.435203!10469-106I1;0.553294!10067-101I4;0.438639!10411-106B6;0.901647!10471-106I3;0.675496!10030-101E3;0.724709!10475-106I7;0.700911!10787-110H4;0.227326!10477-106I9;0.588319!10695-109G2;0.197836!11771-123I7;0.793052!11772-123I8;0.550695!11773-123I9;0.0655703!10093-102C3;0.125348!10442-106F1;0.326982!10442-106F1;0.225487!10201-103F3;0.304009!10639-108I9;0.981617!11843-124H7;0.953195!11841-124H5;0.399429!10693-109F9;0.277289!10436-106E4;0.619169!10483-107A6;0.485029!10282-104F3;0.482881!10023-101D5;0.580636!10066-101I3;0.478949!10065-101I2;0.695631!10800-110I8;0.545344!10610-108F7;0.430724!10841-111E4;0.149227!10541-107H1;0.199567!10842-111E5;0.0324184!10562-108A4;0.802066!10024-101D6;0.218859!10064-101I1;0.839833!10609-108F6;0.661314!10048-101G3;0.937821!10781-110G7;0.583945!10181-103D1;0.674341!10159-103A6;0.598677!10056-101H2;0.564823!10737-110B8;0.724725!10025-101D7;0.964592!10044-101F8;0.601586!10424-106D1;0.838276!10463-106H4;0.680037!10616-108G4;0.376728!10486-107A9;0.76559!10062-101H8;0.841717!10202-103F4;0.787269!10158-103A5;0.296851!10441-106E9;0.532215!10031-101E4;0.0293709!10063-101H9;0.736929!10063-101H9;0.972486!11763-123H8;0.400156!11765-123I1;0.386193!11768-123I4;0.253692!10807-111A6;0.032358!10790-110H7;0.32835!10798-110I6;0.556462!10786-110H3;0.301651!10591-108D6;0.851332!10593-108D8;0.27594!10590-108D5;0.374297!10026-101D8;0.39145!10096-102C6;0.575831!10168-103B6;0.105155!10154-103A1;0.791228!10209-103G2;0.635968!10061-101H7;0.433674!10027-101D9;0.453598!10043-101F7;0.616666!10783-110G9;0.929526!10028-101E1;0.162543!10060-101H6;0.248339!10203-103F5;0.47694!10059-101H5;0.462706!10047-101G2;0.186268!10029-101E2;0.443305!10058-101H4;0.495559!10418-106C4;0.309605!10492-107B6;0.568682!10694-109G1;0.42112!10797-110I5;0.146472!10057-101H3;0.583871!10100-102D1;0.469569!10055-101H1;0.941926!10204-103F6;0.884414!10191-103E2;0.847212!10563-108A5;0.839252
|name=CNhs12345_bu_f2
|name=CNhs12345_bu_f2
|tomtom_result=AFT2#MA0270.1;-3;0.00400244;1.90516;1;8;AGGGTGGTGTGT;GGGGTGTG;-!RREB1#MA0073.1;3;0.00496062;2.36125;1;12;AGGGTGGTGTGT;TGGGGGGGGGTGGTTTGGGG;-!Pax4#MA0068.1;6;0.00570461;2.7154;1;12;AGGGTGGTGTGT;GGGGGGGGAGTGGAGTATTGGAAATTTTTC;-!En1#MA0027.1;-1;0.00711855;3.38843;1;11;AGGGTGGTGTGT;AAGTAGTGCCC;+!BRCA1#MA0133.1;-3;0.0103637;4.93313;1;7;AGGGTGGTGTGT;GTGTTGT;-!ADR1#MA0268.1;-3;0.0129994;6.18773;1;7;AGGGTGGTGTGT;GTGGGGT;-!YPR022C#MA0436.1;-2;0.0162173;7.71945;1;7;AGGGTGGTGTGT;CGTGGGG;-!NFE2L2#MA0150.1;-4;0.0163112;7.76413;1;8;AGGGTGGTGTGT;TGCTGAGTCAT;-!YGR067C#MA0425.1;4;0.0164958;7.85198;1;10;AGGGTGGTGTGT;TGAAAAAGTGGGGT;-!Klf4#MA0039.2;0;0.0183309;8.72551;1;10;AGGGTGGTGTGT;TGGGTGGGGC;+!MET31#MA0333.1;0;0.0196906;9.37273;1;9;AGGGTGGTGTGT;GGTGTGGCG;+!AFT1#MA0269.1;2;0.0201117;9.57317;1;12;AGGGTGGTGTGT;CCAATCGGGTGCAATATGTAA;-!GCN4#MA0303.1;0;0.0201117;9.57317;1;12;AGGGTGGTGTGT;CAAGGGATGAGTCATACTTCA;+
}}
}}

Latest revision as of 14:19, 7 September 2012

Full Name: CNhs12345_bu_f2

Motif matrix
POACGT
129.8691052723820364.98585841347709820.1953417981263325.9496945160145405
216.9150872855267841.70938944701474534.109663034446568.265860233011919
313.9757211524115819.82335434435962226.3225087910516570.8784157121771541
41.188296679238028320.77255331400642326.4491299243531912.590020082402368
51.79657708336594455.9273631552415811.10105171450655752.1750080468859
60.01.23902925208978650.03431511998079.726655627929516
70.353372888555903210.08366067408590749.861930503371910.7010359339862797
81.59858310331632620.35337288855590324.20240943762502854.84563457050273
91.15429822379577155.71059854567406149.0953446672320845.039758563298087
108.46282618208368821.900254079256353.316206899187033527.320712839472943
1117.330886967225917.71289805338560826.6313280291515339.324886950236962
123.8317817267447646.1281286647978884.83951431053428146.20057529792307

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
AFT2#MA0270.1-30.004002441.9051618AGGGTGGTGTGTGGGGTGTG-
RREB1#MA0073.130.004960622.36125112AGGGTGGTGTGTTGGGGGGGGGTGGTTTGGGG-
Pax4#MA0068.160.005704612.7154112AGGGTGGTGTGTGGGGGGGGAGTGGAGTATTGGAAATTTTTC-
En1#MA0027.1-10.007118553.38843111AGGGTGGTGTGTAAGTAGTGCCC+
BRCA1#MA0133.1-30.01036374.9331317AGGGTGGTGTGTGTGTTGT-
ADR1#MA0268.1-30.01299946.1877317AGGGTGGTGTGTGTGGGGT-
YPR022C#MA0436.1-20.01621737.7194517AGGGTGGTGTGTCGTGGGG-
NFE2L2#MA0150.1-40.01631127.7641318AGGGTGGTGTGTTGCTGAGTCAT-
YGR067C#MA0425.140.01649587.85198110AGGGTGGTGTGTTGAAAAAGTGGGGT-
Klf4#MA0039.200.01833098.72551110AGGGTGGTGTGTTGGGTGGGGC+
MET31#MA0333.100.01969069.3727319AGGGTGGTGTGTGGTGTGGCG+
AFT1#MA0269.120.02011179.57317112AGGGTGGTGTGTCCAATCGGGTGCAATATGTAA-
GCN4#MA0303.100.02011179.57317112AGGGTGGTGTGTCAAGGGATGAGTCATACTTCA+
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