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MacroAPE 1083:5-TCATTTGC: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;2.349;465.102;742.284;1136.916!2;387.585;1035.909;481.545;443.961!3;1742.958;21.141;582.552;2.349!4;157.383;364.095;333.558;1493.964!5;136.2...")
 
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4031!10455-106G5;0.00937389!10534-107G3;0.992427!10429-106D6;0.316851!10464-106H5;0.586435!10827-111C8;0.679851!10789-110H6;0.587369!10828-111C9;0.871105!10788-110H5;0.736242!10792-110H9;0.41802!10765-110E9;0.464755!10829-111D1;0.75706!10830-111D2;0.875914!10831-111D3;0.985876!10832-111D4;0.697266!10833-111D5;0.537951!10764-110E8;0.559994!10770-110F5;0.971485!10399-106A3;0.806587!10400-106A4;0.282508!10405-106A9;0.369778!10834-111D6;0.147121!10835-111D7;0.760962!10836-111D8;0.0917656!10837-111D9;0.00380593!10699-109G6;0.0716897!10802-111A1;0.592333!10796-110I4;0.541304!10010-101C1;0.0209221!10810-111A9;0.0401933!10421-106C7;0.131712!10708-109H6;0.585842!12235-129G3;0.0147128!12236-129G4;0.383037!12237-129G5;0.432546!10167-103B5;0.18426!10151-102I7;0.269133!10428-106D5;0.37431!10795-110I3;0.468716!10805-111A4;0.624115!10052-101G7;0.0449399!10189-103D9;0.756616!10589-108D4;0.884546!10425-106D2;0.0507037!10427-106D4;0.0975203!10702-109G9;0.626692!10432-106D9;0.0273851!10496-107C1;0.00263586!10718-109I7;0.00434228!10011-101C2;0.919699!10053-101G8;0.63386!10686-109F2;0.189015!10084-102B3;0.264412!10012-101C3;0.159485!10085-102B4;0.305951!10482-107A5;0.45377!10419-106C5;0.0101201!10080-102A8;0.00321215!10760-110E4;0.916299!10709-109H7;0.102317!10710-109H8;0.00546893!10703-109H1;0.0188185!10719-109I8;0.00012129!10642-109A3;0.00010379!10177-103C6;2.83133e-05!10164-103B2;0.141076!10173-103C2;0.353892!10166-103B4;0.121027!10083-102B2;0.199309!10188-103D8;0.155173!10552-107I3;0.153859!10553-107I4;0.295764!10013-101C4;0.263381!10536-107G5;0.498846!10618-108G6;0.496159!10423-106C9;0.0903913!10785-110H2;0.0328194!12238-129G6;0.0156848!12239-129G7;0.398218!12240-129G8;0.407543!10416-106C2;0.0358509!10801-110I9;0.777763!10766-110F1;0.380248!10824-111C5;0.404126!10825-111C6;0.0115769!10826-111C7;0.0151416!10454-106G4;0.0197032!10409-106B4;0.0295974!10638-108I8;0.407072!10636-108I6;0.00133759!10513-107D9;0.000138301!10420-106C6;0.0664582!10082-102B1;0.0728325!10014-101C5;0.638959!10070-101I7;0.636624!10452-106G2;0.923352!10453-106G3;0.00927818!10449-106F8;0.0074693!10042-101F6;0.0206699!10069-101I6;0.216328!10193-103E4;0.147054!10631-108I1;0.150386!10438-106E6;0.251047!10488-107B2;0.00879289!10196-103E7;0.758143!10071-101I8;0.294379!10071-101I8;0.296654!10041-101F5;0.0855327!10451-106G1;0.653096!10450-106F9;0.000575377!10604-108F1;0.000524122!10605-108F2;0.251653!10606-108F3;0.735645!10603-108E9;0.274813!10497-107C2;0.427582!10448-106F7;0.0253956!10643-109A4;0.456047!10426-106D3;0.0324766!10431-106D8;0.175585!10197-103E8;0.0163983!10443-106F2;0.562058!10815-111B5;0.0163254!10816-111B6;0.110027!10817-111B7;0.0257088!10015-101C6;0.141667!10410-106B5;0.453966!10054-101G9;0.185829!10758-110E2;0.411592!10711-109H9;0.703151!10040-101F4;0.184468!10470-106I2;0.383615!10415-106C1;0.0332055!10198-103E9;0.812704!10614-108G2;0.902705!10612-108F9;0.600043!10549-107H9;0.00302985!10615-108G3;0.00150821!10487-107B1;0.00483098!10433-106E1;0.85139!10688-109F4;0.774657!10444-106F3;0.243774!10444-106F3;0.225402!10485-107A8;0.23842!10413-106B8;0.365379!10175-103C4;0.430091!10161-103A8;0.137952!12131-128D7;0.220737!10624-108H3;0.73208!10712-109I1;0.620513!10205-103F7;0.882896!10206-103F8;0.193662!10207-103F9;0.151054!10050-101G5;0.164589!10051-101G6;0.795272!10016-101C7;0.0633274!10046-101G1;0.0879477!10778-110G4;0.798166!10633-108I3;0.166365!10818-111B8;0.00420166!10819-111B9;0.0878251!10820-111C1;0.0965722!10484-107A7;0.0675662!10808-111A7;0.00756854!10169-103B7;0.397592!10153-102I9;0.351418!13425-144D5;0.255731!13433-144E4;0.00734977!13437-144E8;0.0132139!11904-125F5;0.0260133!11905-125F6;0.368493!10039-101F3;0.424849!10791-110H8;0.379443!10017-101C8;0.600852!10045-101F9;0.811744!10509-107D5;0.0183191!10839-111E2;0.107548!10692-109F8;0.909939!10079-102A7;0.0137879!10078-102A6;0.116631!10721-110A1;0.024524!10569-108B2;0.628971!10570-108B3;0.217687!10571-108B4;0.0570511!10647-109A8;0.524872!10752-110D5;0.242854!10782-110G8;0.351352!10726-110A6;0.131062!10018-101C9;0.483297!10086-102B5;0.095319!10182-103D2;0.306148!10165-103B3;0.179194!10499-107C4;0.309548!10408-106B3;0.161122!10019-101D1;0.061061!10068-101I5;0.528652!10075-102A3;0.718669!10077-102A5;0.104808!10727-110A7;0.0390531!10775-110G1;0.649259!10412-106B7;0.327325!12231-129F8;0.145653!12232-129F9;0.354483!12233-129G1;0.167971!12234-129G2;0.102579!10414-106B9;0.155428!10170-103B8;0.045637!10183-103D3;0.482349!10150-102I6;0.418199!10174-103C3;0.322502!10155-103A2;0.0839784!10038-101F2;0.083991!10838-111E1;0.1101!10759-110E3;0.0322637!10514-107E1;0.198538!10465-106H6;0.756673!10691-109F7;0.972397!10843-111E6;0.00734966!10844-111E7;0.00083987!11747-123G1;0.000705781!11748-123G2;0.222521!11749-123G3;0.869903!11750-123G4;0.266013!11751-123G5;0.0737732!11840-124H4;0.0282621!11752-123G6;0.00770999!11753-123G7;0.107615!11754-123G8;0.165301!11755-123G9;0.913668!11756-123H1;0.972402!11833-124G6;0.568923!11760-123H5;0.0644772!11836-124G9;0.581996!11758-123H3;0.201225!11835-124G8;0.0703562!11762-123H7;0.21432!11838-124H2;0.243918!11757-123H2;0.0466874!11759-123H4;0.498179!11761-123H6;0.215658!11842-124H6;0.488152!11837-124H1;0.642547!10568-108B1;0.142825!13230-141I8;0.93628!13231-141I9;0.795946!10696-109G3;0.431354!10493-107B7;0.332425!10494-107B8;0.553831!10850-111F4;0.172252!10851-111F5;0.0766857!10852-111F6;0.549077!10853-111F7;0.778671!10854-111F8;0.856342!10855-111F9;0.940948!10856-111G1;0.491852!10847-111F1;0.927346!10846-111E9;0.00628082!10848-111F2;0.694996!10845-111E8;0.361922!10857-111G2;0.0155685!10858-111G3;0.0225037!10156-103A3;0.704265!11901-125F2;0.314799!11902-125F3;0.223249!11903-125F4;0.107458!10689-109F5;0.0319733!10648-109A9;0.430486!10784-110H1;0.171627!10744-110C6;0.0800514!10772-110F7;0.812947!10474-106I6;0.230261!10600-108E6;0.240455!10684-109E9;0.0494625!12226-129F3;0.399926!12227-129F4;0.564564!10508-107D4;0.450583!10539-107G8;0.0113835!10607-108F4;0.00164257!10555-107I6;0.0300143!10774-110F9;0.00787483!10637-108I7;0.0175581!10663-109C6;0.0227277!10728-110A8;0.0145946!10729-110A9;0.0680647!10430-106D7;0.335066!10730-110B1;0.231887!10813-111B3;0.00991982!10812-111B2;0.349063!10037-101F1;0.0760826!10172-103C1;0.319843!10163-103B1;0.399264!10076-102A4;0.300724!10073-102A1;0.331437!10036-101E9;0.0874752!10195-103E6;0.357389!10277-104E7;0.353904!10434-106E2;0.266501!10550-107I1;0.704809!10545-107H5;0.0603493!10544-107H4;0.655411!10704-109H2;0.612266!10510-107D6;0.44991!10558-107I9;0.0454143!10020-101D2;0.503552!10732-110B3;0.134519!10049-101G4;0.644989!10698-109G5;0.136281!10437-106E5;0.0700116!10417-106C3;0.849565!10035-101E8;0.0567337!10171-103B9;0.36138!10157-103A4;0.43342!10034-101E7;0.386136!10072-101I9;0.37601!10199-103F1;0.12793!10200-103F2;0.159881!10697-109G4;0.0784349!10723-110A3;0.0570987!10179-103C8;0.123381!10160-103A7;0.408116!10180-103C9;0.51127!10162-103A9;0.613228!10021-101D3;0.690011!10840-111E3;0.202761!10706-109H4;0.472108!10033-101E6;0.747455!10032-101E5;0.302038!10490-107B4;0.369443!10439-106E7;0.0606826!10022-101D4;0.0331542!10176-103C5;0.957117!10469-106I1;0.255767!10067-101I4;0.0219022!10411-106B6;0.140912!10471-106I3;0.0562628!10030-101E3;0.258061!10475-106I7;0.194428!10787-110H4;0.0657394!10477-106I9;0.00390168!10695-109G2;0.00672991!11771-123I7;0.091094!11772-123I8;0.542603!11773-123I9;0.402483!10093-102C3;0.407164!10442-106F1;0.0615601!10442-106F1;0.379023!10201-103F3;0.351701!10639-108I9;0.927108!11843-124H7;0.0422693!11841-124H5;0.617921!10693-109F9;0.216506!10436-106E4;0.0210368!10483-107A6;0.0155801!10282-104F3;0.00326243!10023-101D5;0.0834987!10066-101I3;0.0259566!10065-101I2;0.230781!10800-110I8;0.864559!10610-108F7;8.98091e-05!10841-111E4;0.045046!10541-107H1;0.00898013!10842-111E5;0.00258807!10562-108A4;0.00429013!10024-101D6;0.000424206!10064-101I1;0.689905!10609-108F6;0.69217!10048-101G3;0.00229552!10781-110G7;0.220661!10181-103D1;0.0223874!10159-103A6;0.0123595!10056-101H2;0.08343!10737-110B8;0.0281336!10025-101D7;0.501608!10044-101F8;0.240703!10424-106D1;0.989188!10463-106H4;0.764298!10616-108G4;0.87308!10486-107A9;0.745547!10062-101H8;0.284833!10202-103F4;0.01365!10158-103A5;0.188248!10441-106E9;0.480145!10031-101E4;8.81379e-05!10063-101H9;0.345864!10063-101H9;0.0723344!11763-123H8;0.315536!11765-123I1;0.0372083!11768-123I4;0.0350657!10807-111A6;0.0272478!10790-110H7;0.00413309!10798-110I6;0.0192585!10786-110H3;0.00160436!10591-108D6;0.0186894!10593-108D8;0.00131752!10590-108D5;0.0310034!10026-101D8;0.081519!10096-102C6;0.595779!10168-103B6;0.563638!10154-103A1;0.119781!10209-103G2;0.167317!10061-101H7;0.138712!10027-101D9;0.656389!10043-101F7;0.846848!10783-110G9;0.783376!10028-101E1;0.765278!10060-101H6;0.0064059!10203-103F5;0.0994495!10059-101H5;0.161416!10047-101G2;0.380548!10029-101E2;0.549069!10058-101H4;0.444579!10418-106C4;0.806825!10492-107B6;0.0099138!10694-109G1;0.00276716!10797-110I5;0.872155!10057-101H3;0.678707!10100-102D1;0.833978!10055-101H1;0.167468!10204-103F6;0.100534!10191-103E2;0.665325!10563-108A5;0.102152
|name=5-TCATTTGC,BestGuess:PH0145.1_Pou2f3(0.71629618284599),T:2349.0(42.06%),B:14120.3(32.94%),P:1e-40
|name=5-TCATTTGC,BestGuess:PH0145.1_Pou2f3(0.71629618284599),T:2349.0(42.06%),B:14120.3(32.94%),P:1e-40
|tomtom_result=nub#MA0453.1;1;4.2846e-06;0.00203947;0.00407894;8;TCATTTGC;CTAATTTGCATA;-!Pou5f1#MA0142.1;-2;0.00900445;4.28612;1;6;TCATTTGC;ATTTGCATAACAAAG;-!HOXA5#MA0158.1;-1;0.0104615;4.97965;1;7;TCATTTGC;AATTAGTG;-!YPR013C#MA0434.1;0;0.0167772;7.98596;1;8;TCATTTGC;TGATCTACA;-!HMG-I/Y#MA0045.1;6;0.0168997;8.04426;1;8;TCATTTGC;GTTTTTCCATTTGTTG;-!Gfi#MA0038.1;3;0.01722;8.1967;1;7;TCATTTGC;CAGTGATTTG;-
}}
}}

Latest revision as of 14:20, 7 September 2012

Full Name: 5-TCATTTGC,BestGuess:PH0145.1_Pou2f3(0.71629618284599),T:2349.0(42.06%),B:14120.3(32.94%),P:1e-40

Motif matrix
POACGT
12.349465.102742.2841136.916
2387.5851035.909481.545443.961
31742.95821.141582.5522.349
4157.383364.095333.5581493.964
5136.2422.34918.7922191.617
6131.544561.411387.5851268.46
7700.002258.391364.76925.839
8681.211592.62218.79256.376

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation

nub#MA0453.114.2846e-060.002039470.004078948TCATTTGCCTAATTTGCATA-
Pou5f1#MA0142.1-20.009004454.2861216TCATTTGCATTTGCATAACAAAG-
HOXA5#MA0158.1-10.01046154.9796517TCATTTGCAATTAGTG-
YPR013C#MA0434.100.01677727.9859618TCATTTGCTGATCTACA-
HMG-I/Y#MA0045.160.01689978.0442618TCATTTGCGTTTTTCCATTTGTTG-
Gfi#MA0038.130.017228.196717TCATTTGCCAGTGATTTG-