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MacroAPE 1083:10-GCTTHCTCAT: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;0.251;13.554;236.944;0.251!2;0.251;208.581;26.104;16.064!3;11.546;0.251;0.251;238.952!4;0.251;0.251;16.064;234.434!5;85.842;84.085;21.084;59...")
 
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;0.412747!11753-123G7;0.644028!11754-123G8;0.466265!11755-123G9;0.241913!11756-123H1;0.257549!11833-124G6;0.907438!11760-123H5;0.937039!11836-124G9;0.44395!11758-123H3;0.358924!11835-124G8;0.369824!11762-123H7;0.621412!11838-124H2;0.648243!11757-123H2;0.791242!11759-123H4;0.696992!11761-123H6;0.421396!11842-124H6;0.947664!11837-124H1;0.289661!10568-108B1;0.603202!13230-141I8;0.10836!13231-141I9;0.119738!10696-109G3;0.126578!10493-107B7;0.876276!10494-107B8;0.0896279!10850-111F4;0.0268654!10851-111F5;0.341438!10852-111F6;0.571756!10853-111F7;0.6372!10854-111F8;0.00326853!10855-111F9;0.225972!10856-111G1;0.00754336!10847-111F1;0.271156!10846-111E9;0.214472!10848-111F2;0.449345!10845-111E8;0.0167!10857-111G2;0.215223!10858-111G3;0.073238!10156-103A3;0.29073!11901-125F2;0.666656!11902-125F3;0.0157937!11903-125F4;0.00674242!10689-109F5;0.0122427!10648-109A9;0.198784!10784-110H1;0.619951!10744-110C6;0.269204!10772-110F7;0.0375406!10474-106I6;0.024354!10600-108E6;0.0174625!10684-109E9;0.0308368!12226-129F3;0.00183158!12227-129F4;0.0854358!10508-107D4;0.754457!10539-107G8;0.0560493!10607-108F4;0.00921277!10555-107I6;0.00439766!10774-110F9;0.0950889!10637-108I7;0.041063!10663-109C6;0.0700449!10728-110A8;0.0772543!10729-110A9;0.0470904!10430-106D7;0.355539!10730-110B1;0.512872!10813-111B3;0.00524319!10812-111B2;0.113148!10037-101F1;0.272738!10172-103C1;0.496824!10163-103B1;0.0660333!10076-102A4;0.902856!10073-102A1;0.290852!10036-101E9;0.159615!10195-103E6;0.241277!10277-104E7;0.422889!10434-106E2;0.453734!10550-107I1;0.225638!10545-107H5;0.17538!10544-107H4;0.127856!10704-109H2;0.360436!10510-107D6;0.789323!10558-107I9;0.491467!10020-101D2;0.127608!10732-110B3;0.82158!10049-101G4;0.753564!10698-109G5;0.231616!10437-106E5;0.342475!10417-106C3;0.223873!10035-101E8;0.473943!10171-103B9;0.294412!10157-103A4;0.244928!10034-101E7;0.546442!10072-101I9;0.315137!10199-103F1;0.146917!10200-103F2;0.814952!10697-109G4;0.456085!10723-110A3;0.0741591!10179-103C8;0.000390589!10160-103A7;0.074532!10180-103C9;0.23372!10162-103A9;0.805767!10021-101D3;0.871971!10840-111E3;0.138856!10706-109H4;0.0941978!10033-101E6;0.200698!10032-101E5;0.443497!10490-107B4;0.274151!10439-106E7;0.0225412!10022-101D4;0.112646!10176-103C5;0.640097!10469-106I1;0.54401!10067-101I4;0.330942!10411-106B6;0.693536!10471-106I3;0.170724!10030-101E3;0.0757052!10475-106I7;0.93957!10787-110H4;0.045876!10477-106I9;1.64467e-05!10695-109G2;0.0567717!11771-123I7;0.18453!11772-123I8;0.23943!11773-123I9;0.0500977!10093-102C3;0.0864648!10442-106F1;0.457913!10442-106F1;0.0285645!10201-103F3;0.0528293!10639-108I9;0.329496!11843-124H7;0.00348183!11841-124H5;0.063664!10693-109F9;0.128237!10436-106E4;0.157606!10483-107A6;0.0315168!10282-104F3;0.0962228!10023-101D5;0.010536!10066-101I3;0.0442732!10065-101I2;0.158677!10800-110I8;0.241014!10610-108F7;0.0613899!10841-111E4;0.0698599!10541-107H1;0.0024263!10842-111E5;0.0672769!10562-108A4;0.0334604!10024-101D6;0.0759636!10064-101I1;0.0682996!10609-108F6;0.285691!10048-101G3;0.0647619!10781-110G7;0.580155!10181-103D1;0.00303768!10159-103A6;0.595962!10056-101H2;0.319843!10737-110B8;0.340933!10025-101D7;0.438848!10044-101F8;0.000446742!10424-106D1;1.06613e-05!10463-106H4;0.0368668!10616-108G4;0.00970807!10486-107A9;0.0906316!10062-101H8;0.00510324!10202-103F4;0.436965!10158-103A5;0.620052!10441-106E9;0.598226!10031-101E4;0.00579793!10063-101H9;0.398445!10063-101H9;0.260898!11763-123H8;0.332155!11765-123I1;0.250578!11768-123I4;0.462445!10807-111A6;0.13189!10790-110H7;0.279075!10798-110I6;0.225249!10786-110H3;0.0319751!10591-108D6;0.170361!10593-108D8;0.060276!10590-108D5;0.419744!10026-101D8;0.312534!10096-102C6;0.665783!10168-103B6;0.154045!10154-103A1;0.420785!10209-103G2;0.927742!10061-101H7;0.741627!10027-101D9;0.241976!10043-101F7;0.0067052!10783-110G9;0.000534265!10028-101E1;0.0502467!10060-101H6;0.196701!10203-103F5;0.35496!10059-101H5;0.262326!10047-101G2;0.0550935!10029-101E2;0.0146023!10058-101H4;0.0863805!10418-106C4;0.391241!10492-107B6;0.22243!10694-109G1;0.000853922!10797-110I5;0.111495!10057-101H3;0.384191!10100-102D1;0.587134!10055-101H1;0.526789!10204-103F6;0.435272!10191-103E2;0.0317349!10563-108A5;0.00198802
|name=10-GCTTHCTCAT,CNhs13227,BestGuess:SPIB_f1_HM09(0.679182037171933),T:251.0(7.98%),B:1662.7(3.71%),P:1e-27
|name=10-GCTTHCTCAT,CNhs13227,BestGuess:SPIB_f1_HM09(0.679182037171933),T:251.0(7.98%),B:1662.7(3.71%),P:1e-27
|tomtom_result=CAD1#MA0279.1;0;3.00738e-05;0.0143151;0.0202737;10;GCTTACTCAT;GCTTACTAAT;-!YAP7#MA0419.1;1;4.26025e-05;0.0202788;0.0202737;10;GCTTACTCAT;TGCTTACTAAT;-!GCR2#MA0305.1;0;0.000368958;0.175624;0.117053;7;GCTTACTCAT;GCTTCCT;+!NFE2L2#MA0150.1;1;0.00142459;0.678105;0.338967;10;GCTTACTCAT;TGCTGAGTCAT;-!SPI1#MA0080.2;0;0.00302696;1.44083;0.576187;7;GCTTACTCAT;ACTTCCT;-!GCR1#MA0304.1;1;0.0052883;2.51723;0.838865;7;GCTTACTCAT;GGCTTCCA;-!SPI1#MA0080.2;-1;0.0084111;4.00368;0.999747;6;GCTTACTCAT;CTTCCG;-!Mafb#MA0117.1;0;0.0104587;4.97836;0.999747;8;GCTTACTCAT;GCTGACGG;+!GSM1#MA0308.1;11;0.0113989;5.42588;0.999747;10;GCTTACTCAT;TATACTCCGGAGTTTTTTAAT;-!FOXA1#MA0148.1;1;0.0115307;5.4886;0.999747;10;GCTTACTCAT;TGTTTACTTTG;+!SPIB#MA0081.1;-2;0.0121029;5.76099;0.999747;7;GCTTACTCAT;TTCCTCT;-!IXR1#MA0323.1;4;0.0154485;7.35349;0.999747;10;GCTTACTCAT;CCCCGCTTCCGGCTT;-!HNF1A#MA0046.1;0;0.0175329;8.34567;0.999747;10;GCTTACTCAT;GGTTAATAATTAAC;+!ttx-3::ceh-10#MA0263.1;4;0.0190175;9.05234;0.999747;10;GCTTACTCAT;ATTGGCTTCGTTAA;+
}}
}}

Latest revision as of 14:23, 7 September 2012

Full Name: 10-GCTTHCTCAT,CNhs13227,BestGuess:SPIB_f1_HM09(0.679182037171933),T:251.0(7.98%),B:1662.7(3.71%),P:1e-27

Motif matrix
POACGT
10.25113.554236.9440.251
20.251208.58126.10416.064
311.5460.2510.251238.952
40.2510.25116.064234.434
585.84284.08521.08459.738
611.546215.8623.3430.251
70.2510.2510.251250.247
853.714112.69958.48326.104
9182.72810.0437.6520.582
100.2510.2510.251250.247

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
CAD1#MA0279.103.00738e-050.01431510.020273710GCTTACTCATGCTTACTAAT-
YAP7#MA0419.114.26025e-050.02027880.020273710GCTTACTCATTGCTTACTAAT-
GCR2#MA0305.100.0003689580.1756240.1170537GCTTACTCATGCTTCCT+
NFE2L2#MA0150.110.001424590.6781050.33896710GCTTACTCATTGCTGAGTCAT-
SPI1#MA0080.200.003026961.440830.5761877GCTTACTCATACTTCCT-
GCR1#MA0304.110.00528832.517230.8388657GCTTACTCATGGCTTCCA-
SPI1#MA0080.2-10.00841114.003680.9997476GCTTACTCATCTTCCG-
Mafb#MA0117.100.01045874.978360.9997478GCTTACTCATGCTGACGG+
GSM1#MA0308.1110.01139895.425880.99974710GCTTACTCATTATACTCCGGAGTTTTTTAAT-
FOXA1#MA0148.110.01153075.48860.99974710GCTTACTCATTGTTTACTTTG+
SPIB#MA0081.1-20.01210295.760990.9997477GCTTACTCATTTCCTCT-
IXR1#MA0323.140.01544857.353490.99974710GCTTACTCATCCCCGCTTCCGGCTT-
HNF1A#MA0046.100.01753298.345670.99974710GCTTACTCATGGTTAATAATTAAC+
ttx-3::ceh-10#MA0263.140.01901759.052340.99974710GCTTACTCATATTGGCTTCGTTAA+
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