MacroAPE 1083:6-GAGAGGGGGTGG: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{Macroape_1083
|PWM=PO;A;C;G;T!1;51.678;6.264;435.348;28.71!2;392.544;41.238;48.546;39.672!3;43.848;40.194;429.084;8.874!4;421.776;41.238;27.666;31.32!5;52.2;11.484;439.524;...") |
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07!10717-109I6;0.689854!10455-106G5;0.847459!10534-107G3;0.00136203!10429-106D6;0.00670898!10464-106H5;0.191528!10827-111C8;0.00106938!10789-110H6;0.0245231!10828-111C9;0.00197749!10788-110H5;0.000511359!10792-110H9;0.00015741!10765-110E9;0.00167793!10829-111D1;0.00449199!10830-111D2;0.00836434!10831-111D3;0.00210236!10832-111D4;0.0172863!10833-111D5;0.00607941!10764-110E8;0.00220322!10770-110F5;0.00484424!10399-106A3;6.5131e-05!10400-106A4;0.00270098!10405-106A9;0.00190564!10834-111D6;0.00203892!10835-111D7;0.000599851!10836-111D8;0.0115719!10837-111D9;0.0431856!10699-109G6;0.00601529!10802-111A1;0.0446171!10796-110I4;0.00570421!10010-101C1;0.000474697!10810-111A9;0.162489!10421-106C7;0.534386!10708-109H6;0.00027764!12235-129G3;0.880669!12236-129G4;0.8862!12237-129G5;0.659002!10167-103B5;0.743526!10151-102I7;0.0213391!10428-106D5;0.00663479!10795-110I3;0.0987862!10805-111A4;0.0274951!10052-101G7;0.415831!10189-103D9;0.140161!10589-108D4;0.64945!10425-106D2;0.688914!10427-106D4;0.0129344!10702-109G9;0.0171648!10432-106D9;0.287339!10496-107C1;0.825351!10718-109I7;0.0214764!10011-101C2;0.0010739!10053-101G8;0.0447225!10686-109F2;0.0241125!10084-102B3;0.476182!10012-101C3;0.0205067!10085-102B4;0.0286923!10482-107A5;0.00219458!10419-106C5;0.739461!10080-102A8;0.22521!10760-110E4;0.151281!10709-109H7;0.992595!10710-109H8;0.860653!10703-109H1;0.235743!10719-109I8;0.337474!10642-109A3;0.244837!10177-103C6;0.510317!10164-103B2;0.0427581!10173-103C2;0.0291707!10166-103B4;0.279883!10083-102B2;0.0981917!10188-103D8;0.0843402!10552-107I3;0.00838207!10553-107I4;0.0201775!10013-101C4;0.833752!10536-107G5;0.0137857!10618-108G6;0.668894!10423-106C9;0.0661068!10785-110H2;0.00752856!12238-129G6;0.0382891!12239-129G7;0.732196!12240-129G8;0.173361!10416-106C2;0.848667!10801-110I9;0.00889367!10766-110F1;0.000353008!10824-111C5;0.000457287!10825-111C6;0.0349132!10826-111C7;0.0559503!10454-106G4;0.0525338!10409-106B4;0.00849629!10638-108I8;0.0070769!10636-108I6;0.602828!10513-107D9;0.740733!10420-106C6;0.626037!10082-102B1;0.882483!10014-101C5;0.414849!10070-101I7;0.441156!10452-106G2;0.0560089!10453-106G3;0.0495575!10449-106F8;0.015325!10042-101F6;0.00774883!10069-101I6;0.0252472!10193-103E4;0.310347!10631-108I1;0.0324107!10438-106E6;0.00483888!10488-107B2;0.469992!10196-103E7;0.0451702!10071-101I8;0.0875141!10071-101I8;0.224742!10041-101F5;0.0418222!10451-106G1;0.00287859!10450-106F9;0.189438!10604-108F1;0.792199!10605-108F2;0.845328!10606-108F3;0.880701!10603-108E9;0.875127!10497-107C2;0.734945!10448-106F7;0.689589!10643-109A4;0.914718!10426-106D3;0.397278!10431-106D8;0.223757!10197-103E8;0.593366!10443-106F2;0.194579!10815-111B5;0.118512!10816-111B6;0.0848258!10817-111B7;0.0551067!10015-101C6;0.0910898!10410-106B5;0.521657!10054-101G9;0.689785!10758-110E2;0.00705325!10711-109H9;0.817211!10040-101F4;0.666694!10470-106I2;0.0436616!10415-106C1;0.476689!10198-103E9;0.21609!10614-108G2;0.18532!10612-108F9;0.761256!10549-107H9;0.585467!10615-108G3;0.737789!10487-107B1;0.79825!10433-106E1;0.145999!10688-109F4;0.165441!10444-106F3;0.623875!10444-106F3;0.300752!10485-107A8;0.141452!10413-106B8;0.84835!10175-103C4;0.9694!10161-103A8;0.063734!12131-128D7;0.0207579!10624-108H3;0.118601!10712-109I1;0.0660662!10205-103F7;0.000348957!10206-103F8;0.0461399!10207-103F9;0.0606481!10050-101G5;0.142295!10051-101G6;0.526372!10016-101C7;0.262739!10046-101G1;0.116197!10778-110G4;0.0458051!10633-108I3;0.0536249!10818-111B8;0.438947!10819-111B9;0.789143!10820-111C1;0.704505!10484-107A7;0.814956!10808-111A7;0.444225!10169-103B7;0.0686794!10153-102I9;0.0588497!13425-144D5;0.0067607!13433-144E4;0.994319!13437-144E8;0.787764!11904-125F5;0.973313!11905-125F6;0.127599!10039-101F3;0.261218!10791-110H8;0.0233081!10017-101C8;0.00814071!10045-101F9;0.25445!10509-107D5;0.0224065!10839-111E2;0.312414!10692-109F8;0.0692413!10079-102A7;0.555803!10078-102A6;0.139423!10721-110A1;0.230145!10569-108B2;0.142905!10570-108B3;0.0140772!10571-108B4;0.0609014!10647-109A8;0.00298876!10752-110D5;0.00919731!10782-110G8;0.0466625!10726-110A6;0.214056!10018-101C9;0.0942849!10086-102B5;0.885129!10182-103D2;0.972298!10165-103B3;0.0230851!10499-107C4;0.00660457!10408-106B3;0.686681!10019-101D1;0.727249!10068-101I5;0.527641!10075-102A3;0.182268!10077-102A5;0.620153!10727-110A7;0.860214!10775-110G1;2.32685e-05!10412-106B7;0.00407287!12231-129F8;0.747757!12232-129F9;0.042925!12233-129G1;0.0619975!12234-129G2;0.163829!10414-106B9;0.0868232!10170-103B8;0.423398!10183-103D3;0.113874!10150-102I6;0.0557092!10174-103C3;0.0374615!10155-103A2;0.0178106!10038-101F2;0.00528323!10838-111E1;0.00620153!10759-110E3;0.674335!10514-107E1;0.150832!10465-106H6;0.247548!10691-109F7;0.910109!10843-111E6;0.129294!10844-111E7;0.773649!11747-123G1;0.632816!11748-123G2;0.546734!11749-123G3;0.779396!11750-123G4;0.798507!11751-123G5;0.723107!11840-124H4;0.613733!11752-123G6;0.517703!11753-123G7;0.49313!11754-123G8;0.373514!11755-123G9;0.186888!11756-123H1;0.348325!11833-124G6;0.00750943!11760-123H5;0.67293!11836-124G9;0.00166766!11758-123H3;0.055843!11835-124G8;0.00507301!11762-123H7;0.0462259!11838-124H2;0.0723224!11757-123H2;0.0886194!11759-123H4;0.122789!11761-123H6;0.0153493!11842-124H6;0.010014!11837-124H1;0.011389!10568-108B1;0.0215394!13230-141I8;0.882641!13231-141I9;0.601601!10696-109G3;0.349652!10493-107B7;0.0469964!10494-107B8;0.718231!10850-111F4;0.782!10851-111F5;0.167746!10852-111F6;0.609929!10853-111F7;0.367247!10854-111F8;0.371009!10855-111F9;0.557143!10856-111G1;0.584668!10847-111F1;0.718352!10846-111E9;0.779869!10848-111F2;0.795316!10845-111E8;0.784807!10857-111G2;0.685228!10858-111G3;0.0957176!10156-103A3;0.296027!11901-125F2;0.0278996!11902-125F3;0.0152624!11903-125F4;0.0808274!10689-109F5;0.000341211!10648-109A9;0.432576!10784-110H1;0.668349!10744-110C6;0.679958!10772-110F7;0.012265!10474-106I6;0.0011414!10600-108E6;0.000715961!10684-109E9;0.644585!12226-129F3;0.605196!12227-129F4;0.0389807!10508-107D4;0.949371!10539-107G8;0.898217!10607-108F4;0.284024!10555-107I6;0.736349!10774-110F9;0.458078!10637-108I7;0.184573!10663-109C6;0.845543!10728-110A8;0.907163!10729-110A9;0.989944!10430-106D7;0.251485!10730-110B1;0.0406842!10813-111B3;0.809773!10812-111B2;0.0807807!10037-101F1;0.462597!10172-103C1;0.0290091!10163-103B1;0.205541!10076-102A4;0.0329526!10073-102A1;0.0327896!10036-101E9;0.0729539!10195-103E6;0.017141!10277-104E7;0.0286044!10434-106E2;0.0985037!10550-107I1;0.350039!10545-107H5;0.189346!10544-107H4;0.022658!10704-109H2;0.343425!10510-107D6;0.381574!10558-107I9;0.129768!10020-101D2;0.353824!10732-110B3;2.55717e-05!10049-101G4;0.464923!10698-109G5;0.417472!10437-106E5;0.0257407!10417-106C3;0.119464!10035-101E8;0.826897!10171-103B9;0.0356809!10157-103A4;0.110352!10034-101E7;0.0416859!10072-101I9;0.0226642!10199-103F1;0.0748806!10200-103F2;0.736811!10697-109G4;0.338802!10723-110A3;0.776945!10179-103C8;0.819372!10160-103A7;0.018362!10180-103C9;0.0871033!10162-103A9;0.0968375!10021-101D3;0.0672329!10840-111E3;0.602471!10706-109H4;0.00787082!10033-101E6;0.0100074!10032-101E5;0.0653647!10490-107B4;0.0245591!10439-106E7;0.28129!10022-101D4;0.466496!10176-103C5;0.0398102!10469-106I1;0.0446931!10067-101I4;0.439329!10411-106B6;0.0119888!10471-106I3;0.0666771!10030-101E3;0.700383!10475-106I7;0.00117064!10787-110H4;0.946989!10477-106I9;0.503684!10695-109G2;0.293136!11771-123I7;0.041199!11772-123I8;0.517125!11773-123I9;0.968458!10093-102C3;0.692485!10442-106F1;0.71141!10442-106F1;0.479861!10201-103F3;0.629965!10639-108I9;0.0479884!11843-124H7;0.787226!11841-124H5;0.948209!10693-109F9;0.358663!10436-106E4;0.716537!10483-107A6;0.00148158!10282-104F3;0.226835!10023-101D5;0.77017!10066-101I3;0.765376!10065-101I2;0.254843!10800-110I8;0.173366!10610-108F7;0.260487!10841-111E4;0.229568!10541-107H1;0.967811!10842-111E5;0.45742!10562-108A4;0.854735!10024-101D6;0.128569!10064-101I1;0.917616!10609-108F6;0.20275!10048-101G3;0.741458!10781-110G7;0.0182586!10181-103D1;0.475417!10159-103A6;0.0063543!10056-101H2;0.00944399!10737-110B8;0.000489026!10025-101D7;0.399842!10044-101F8;0.770549!10424-106D1;0.274529!10463-106H4;0.0340101!10616-108G4;0.538521!10486-107A9;0.675977!10062-101H8;0.0692555!10202-103F4;0.114753!10158-103A5;0.680473!10441-106E9;0.0102612!10031-101E4;0.343053!10063-101H9;0.00875285!10063-101H9;0.0236345!11763-123H8;0.254563!11765-123I1;0.997528!11768-123I4;0.913977!10807-111A6;0.815025!10790-110H7;0.23837!10798-110I6;0.85467!10786-110H3;0.2012!10591-108D6;0.864562!10593-108D8;0.649379!10590-108D5;0.851016!10026-101D8;0.703706!10096-102C6;0.279249!10168-103B6;0.888765!10154-103A1;0.0199739!10209-103G2;0.0147089!10061-101H7;0.932741!10027-101D9;0.169038!10043-101F7;0.175359!10783-110G9;0.67977!10028-101E1;0.846913!10060-101H6;0.142251!10203-103F5;0.0474691!10059-101H5;0.957845!10047-101G2;0.738182!10029-101E2;0.618399!10058-101H4;0.626462!10418-106C4;0.453066!10492-107B6;0.804786!10694-109G1;0.0254421!10797-110I5;0.0162335!10057-101H3;0.255703!10100-102D1;0.665219!10055-101H1;0.000451448!10204-103F6;0.00538595!10191-103E2;0.0394702!10563-108A5;0.519997 | ||
|name=6-GAGAGGGGGTGG,BestGuess:ZN148_si_HMv8(0.744082029412884),T:522.0(11.04%),B:2639.1(6.05%),P:1e-33 | |name=6-GAGAGGGGGTGG,BestGuess:ZN148_si_HMv8(0.744082029412884),T:522.0(11.04%),B:2639.1(6.05%),P:1e-33 | ||
|tomtom_result=RREB1#MA0073.1;1;0.000218672;0.104088;0.141966;12;GAGAGGGGGTGG;TGGGGGGGGGTGGTTTGGGG;-!YML081W#MA0431.1;0;0.000494583;0.235422;0.141966;9;GAGAGGGGGTGG;GTGCGGGGT;-!MSN4#MA0342.1;-3;0.000637002;0.303213;0.141966;5;GAGAGGGGGTGG;AGGGG;+!RGM1#MA0366.1;-3;0.000637002;0.303213;0.141966;5;GAGAGGGGGTGG;AGGGG;+!btd#MA0443.1;-3;0.000750563;0.357268;0.141966;9;GAGAGGGGGTGG;AGGGGGCGGA;+!MSN2#MA0341.1;-3;0.00145871;0.694345;0.229924;5;GAGAGGGGGTGG;AGGGG;+!Klf4#MA0039.2;-3;0.00243534;1.15922;0.259396;9;GAGAGGGGGTGG;TGGGTGGGGC;+!SP1#MA0079.2;-4;0.00243534;1.15922;0.259396;8;GAGAGGGGGTGG;GGGGGCGGGG;-!YER130C#MA0423.1;0;0.00246853;1.17502;0.259396;9;GAGAGGGGGTGG;AATAGGGGT;-!INSM1#MA0155.1;1;0.00409132;1.94747;0.359166;11;GAGAGGGGGTGG;TGTCAGGGGGCG;+!Egr1#MA0162.1;-1;0.00417754;1.98851;0.359166;11;GAGAGGGGGTGG;TGCGTGGGCGT;+!SP1#MA0079.2;0;0.00517761;2.46454;0.388161;10;GAGAGGGGGTGG;GGGGCGGGGT;+!Pax4#MA0068.1;1;0.00553918;2.63665;0.388161;12;GAGAGGGGGTGG;GGGGGGGGAGTGGAGTATTGGAAATTTTTC;-!MZF1_5-13#MA0057.1;-1;0.0057461;2.73515;0.388161;10;GAGAGGGGGTGG;GGAGGGGGAA;+!MIG1#MA0337.1;-2;0.00790219;3.76144;0.498222;7;GAGAGGGGGTGG;GCGGGGG;-!AFT2#MA0270.1;-3;0.00910766;4.33525;0.538336;8;GAGAGGGGGTGG;GGGGTGTG;-!Macho-1#MA0118.1;-2;0.0107297;5.10734;0.596906;9;GAGAGGGGGTGG;TGGGGGGTC;+!YGR067C#MA0425.1;-1;0.0138731;6.60359;0.692962;11;GAGAGGGGGTGG;TGAAAAAGTGGGGT;-!ADR1#MA0268.1;-2;0.0139218;6.6268;0.692962;7;GAGAGGGGGTGG;GTGGGGT;-!GIS1#MA0306.1;0;0.0155796;7.4159;0.736704;9;GAGAGGGGGTGG;TTTAGGGGT;-!ZMS1#MA0441.1;-1;0.0172145;8.19409;0.775249;9;GAGAGGGGGTGG;TGCGGGGAA;-!opa#MA0456.1;0;0.0181943;8.66047;0.782129;12;GAGAGGGGGTGG;CAGCGGGGGGTC;- | |||
}} | }} |
Latest revision as of 14:25, 7 September 2012
Full Name: 6-GAGAGGGGGTGG,BestGuess:ZN148_si_HMv8(0.744082029412884),T:522.0(11.04%),B:2639.1(6.05%),P:1e-33
Motif matrix | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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|
Sample specificity
The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon
TomTom analysis
<br>Analyst: Michiel de Hoon and Hiroko Ohmiya
Target_ID | Optimal_offset | p-value | E-value | q-value | Overlap | Query consensus | Target consensus | Orientation |
---|---|---|---|---|---|---|---|---|
RREB1#MA0073.1 | 1 | 0.000218672 | 0.104088 | 0.141966 | 12 | GAGAGGGGGTGG | TGGGGGGGGGTGGTTTGGGG | - |
YML081W#MA0431.1 | 0 | 0.000494583 | 0.235422 | 0.141966 | 9 | GAGAGGGGGTGG | GTGCGGGGT | - |
MSN4#MA0342.1 | -3 | 0.000637002 | 0.303213 | 0.141966 | 5 | GAGAGGGGGTGG | AGGGG | + |
RGM1#MA0366.1 | -3 | 0.000637002 | 0.303213 | 0.141966 | 5 | GAGAGGGGGTGG | AGGGG | + |
btd#MA0443.1 | -3 | 0.000750563 | 0.357268 | 0.141966 | 9 | GAGAGGGGGTGG | AGGGGGCGGA | + |
MSN2#MA0341.1 | -3 | 0.00145871 | 0.694345 | 0.229924 | 5 | GAGAGGGGGTGG | AGGGG | + |
Klf4#MA0039.2 | -3 | 0.00243534 | 1.15922 | 0.259396 | 9 | GAGAGGGGGTGG | TGGGTGGGGC | + |
SP1#MA0079.2 | -4 | 0.00243534 | 1.15922 | 0.259396 | 8 | GAGAGGGGGTGG | GGGGGCGGGG | - |
YER130C#MA0423.1 | 0 | 0.00246853 | 1.17502 | 0.259396 | 9 | GAGAGGGGGTGG | AATAGGGGT | - |
INSM1#MA0155.1 | 1 | 0.00409132 | 1.94747 | 0.359166 | 11 | GAGAGGGGGTGG | TGTCAGGGGGCG | + |
Egr1#MA0162.1 | -1 | 0.00417754 | 1.98851 | 0.359166 | 11 | GAGAGGGGGTGG | TGCGTGGGCGT | + |
SP1#MA0079.2 | 0 | 0.00517761 | 2.46454 | 0.388161 | 10 | GAGAGGGGGTGG | GGGGCGGGGT | + |
Pax4#MA0068.1 | 1 | 0.00553918 | 2.63665 | 0.388161 | 12 | GAGAGGGGGTGG | GGGGGGGGAGTGGAGTATTGGAAATTTTTC | - |
MZF1_5-13#MA0057.1 | -1 | 0.0057461 | 2.73515 | 0.388161 | 10 | GAGAGGGGGTGG | GGAGGGGGAA | + |
MIG1#MA0337.1 | -2 | 0.00790219 | 3.76144 | 0.498222 | 7 | GAGAGGGGGTGG | GCGGGGG | - |
AFT2#MA0270.1 | -3 | 0.00910766 | 4.33525 | 0.538336 | 8 | GAGAGGGGGTGG | GGGGTGTG | - |
Macho-1#MA0118.1 | -2 | 0.0107297 | 5.10734 | 0.596906 | 9 | GAGAGGGGGTGG | TGGGGGGTC | + |
YGR067C#MA0425.1 | -1 | 0.0138731 | 6.60359 | 0.692962 | 11 | GAGAGGGGGTGG | TGAAAAAGTGGGGT | - |
ADR1#MA0268.1 | -2 | 0.0139218 | 6.6268 | 0.692962 | 7 | GAGAGGGGGTGG | GTGGGGT | - |
GIS1#MA0306.1 | 0 | 0.0155796 | 7.4159 | 0.736704 | 9 | GAGAGGGGGTGG | TTTAGGGGT | - |
ZMS1#MA0441.1 | -1 | 0.0172145 | 8.19409 | 0.775249 | 9 | GAGAGGGGGTGG | TGCGGGGAA | - |
opa#MA0456.1 | 0 | 0.0181943 | 8.66047 | 0.782129 | 12 | GAGAGGGGGTGG | CAGCGGGGGGTC | - |