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MacroAPE 1083:NR0B1 si: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;0.2072368421052633;2.220394736842101;5.536184210526312;1.036184210526312!2;3.0789473684210553;5.921052631578945;0.0;0.0!3;0.947368421052633;...")
 
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422!10429-106D6;0.60911!10464-106H5;0.711548!10827-111C8;0.557672!10789-110H6;0.655733!10828-111C9;0.62812!10788-110H5;0.820272!10792-110H9;0.980022!10765-110E9;0.886534!10829-111D1;0.433793!10830-111D2;0.459258!10831-111D3;0.660707!10832-111D4;0.610463!10833-111D5;0.829401!10764-110E8;0.998936!10770-110F5;0.150411!10399-106A3;0.335003!10400-106A4;0.872384!10405-106A9;0.929495!10834-111D6;0.89465!10835-111D7;0.980316!10836-111D8;0.270027!10837-111D9;0.865095!10699-109G6;0.337415!10802-111A1;0.911978!10796-110I4;0.8103!10010-101C1;0.224219!10810-111A9;0.633148!10421-106C7;0.733871!10708-109H6;0.0621837!12235-129G3;0.16985!12236-129G4;0.159961!12237-129G5;0.394377!10167-103B5;0.0687257!10151-102I7;0.558014!10428-106D5;0.558062!10795-110I3;0.552619!10805-111A4;0.393606!10052-101G7;0.439996!10189-103D9;0.969146!10589-108D4;0.536438!10425-106D2;0.255237!10427-106D4;0.87725!10702-109G9;0.422546!10432-106D9;0.662875!10496-107C1;0.625674!10718-109I7;0.76169!10011-101C2;0.412401!10053-101G8;0.70078!10686-109F2;0.0244889!10084-102B3;0.248329!10012-101C3;0.776662!10085-102B4;0.769712!10482-107A5;0.406793!10419-106C5;0.799535!10080-102A8;0.455934!10760-110E4;0.796706!10709-109H7;0.562489!10710-109H8;0.1822!10703-109H1;0.936829!10719-109I8;0.205336!10642-109A3;0.152105!10177-103C6;0.0909751!10164-103B2;0.612948!10173-103C2;0.654179!10166-103B4;0.576976!10083-102B2;0.546339!10188-103D8;0.612682!10552-107I3;0.616524!10553-107I4;0.217184!10013-101C4;0.420925!10536-107G5;0.368835!10618-108G6;0.790332!10423-106C9;0.857331!10785-110H2;0.731036!12238-129G6;0.408998!12239-129G7;0.582627!12240-129G8;0.776919!10416-106C2;0.59684!10801-110I9;0.530906!10766-110F1;0.868578!10824-111C5;0.919651!10825-111C6;0.200376!10826-111C7;0.246383!10454-106G4;0.308005!10409-106B4;0.240231!10638-108I8;0.908431!10636-108I6;0.986486!10513-107D9;0.392568!10420-106C6;0.629354!10082-102B1;0.427837!10014-101C5;0.414012!10070-101I7;0.521287!10452-106G2;0.944701!10453-106G3;0.644323!10449-106F8;0.500071!10042-101F6;0.485872!10069-101I6;0.919999!10193-103E4;0.638042!10631-108I1;0.786927!10438-106E6;0.972572!10488-107B2;0.975382!10196-103E7;0.540874!10071-101I8;0.902873!10071-101I8;0.723557!10041-101F5;0.276407!10451-106G1;0.738427!10450-106F9;0.271859!10604-108F1;0.0697274!10605-108F2;0.981421!10606-108F3;0.601871!10603-108E9;0.91981!10497-107C2;0.638357!10448-106F7;0.7018!10643-109A4;0.609275!10426-106D3;0.17469!10431-106D8;0.68909!10197-103E8;0.952611!10443-106F2;0.750863!10815-111B5;0.510366!10816-111B6;0.94679!10817-111B7;0.820923!10015-101C6;0.882449!10410-106B5;0.63783!10054-101G9;0.533212!10758-110E2;0.344104!10711-109H9;0.557467!10040-101F4;0.113779!10470-106I2;0.677337!10415-106C1;0.778853!10198-103E9;0.399728!10614-108G2;0.995387!10612-108F9;0.171197!10549-107H9;0.964659!10615-108G3;0.547312!10487-107B1;0.266258!10433-106E1;0.31803!10688-109F4;0.797776!10444-106F3;0.826916!10444-106F3;0.556182!10485-107A8;0.535397!10413-106B8;0.212114!10175-103C4;0.423119!10161-103A8;0.913077!12131-128D7;0.656507!10624-108H3;0.541726!10712-109I1;0.56645!10205-103F7;0.348933!10206-103F8;0.812755!10207-103F9;0.480127!10050-101G5;0.794013!10051-101G6;0.864763!10016-101C7;0.994902!10046-101G1;0.983474!10778-110G4;0.481895!10633-108I3;0.14395!10818-111B8;0.974539!10819-111B9;0.99912!10820-111C1;0.919378!10484-107A7;0.907758!10808-111A7;0.165849!10169-103B7;0.775358!10153-102I9;0.50278!13425-144D5;0.473837!13433-144E4;0.960927!13437-144E8;0.874183!11904-125F5;0.98311!11905-125F6;0.0713992!10039-101F3;0.0370997!10791-110H8;0.664043!10017-101C8;0.52075!10045-101F9;0.943459!10509-107D5;0.484864!10839-111E2;0.691098!10692-109F8;0.863027!10079-102A7;0.797557!10078-102A6;0.86047!10721-110A1;0.947238!10569-108B2;0.274945!10570-108B3;0.778819!10571-108B4;0.841185!10647-109A8;0.247212!10752-110D5;0.283003!10782-110G8;0.970695!10726-110A6;0.220223!10018-101C9;0.743818!10086-102B5;0.559433!10182-103D2;0.800066!10165-103B3;0.676673!10499-107C4;0.706601!10408-106B3;0.704637!10019-101D1;0.509043!10068-101I5;0.5741!10075-102A3;0.386952!10077-102A5;0.504654!10727-110A7;0.705935!10775-110G1;0.24854!10412-106B7;0.290064!12231-129F8;0.992109!12232-129F9;0.761778!12233-129G1;0.453161!12234-129G2;0.556294!10414-106B9;0.808643!10170-103B8;0.81235!10183-103D3;0.653766!10150-102I6;0.57411!10174-103C3;0.581794!10155-103A2;0.713167!10038-101F2;0.509059!10838-111E1;0.73017!10759-110E3;0.255534!10514-107E1;0.615421!10465-106H6;0.916809!10691-109F7;0.8589!10843-111E6;0.940257!10844-111E7;0.12336!11747-123G1;0.104165!11748-123G2;0.200084!11749-123G3;0.254052!11750-123G4;0.339653!11751-123G5;0.542912!11840-124H4;0.610834!11752-123G6;0.966468!11753-123G7;0.389296!11754-123G8;0.565686!11755-123G9;0.39274!11756-123H1;0.746942!11833-124G6;0.659922!11760-123H5;0.278503!11836-124G9;0.385549!11758-123H3;0.90729!11835-124G8;0.859836!11762-123H7;0.8347!11838-124H2;0.458506!11757-123H2;0.698127!11759-123H4;0.585519!11761-123H6;0.509016!11842-124H6;0.427044!11837-124H1;0.490631!10568-108B1;0.699258!13230-141I8;0.136162!13231-141I9;0.210434!10696-109G3;0.254263!10493-107B7;0.0566321!10494-107B8;0.948955!10850-111F4;0.52048!10851-111F5;0.126155!10852-111F6;0.312389!10853-111F7;0.596805!10854-111F8;0.359296!10855-111F9;0.0487662!10856-111G1;0.60454!10847-111F1;0.853749!10846-111E9;0.62713!10848-111F2;0.50713!10845-111E8;0.45468!10857-111G2;0.110377!10858-111G3;0.446925!10156-103A3;0.145844!11901-125F2;0.670002!11902-125F3;0.00264497!11903-125F4;0.0149285!10689-109F5;0.000112077!10648-109A9;0.142347!10784-110H1;0.588053!10744-110C6;0.314406!10772-110F7;0.748269!10474-106I6;0.61074!10600-108E6;0.200132!10684-109E9;0.65766!12226-129F3;0.772507!12227-129F4;0.229142!10508-107D4;0.884894!10539-107G8;0.231504!10607-108F4;0.28831!10555-107I6;0.265004!10774-110F9;0.572261!10637-108I7;0.345389!10663-109C6;0.191452!10728-110A8;0.0185288!10729-110A9;0.0484402!10430-106D7;0.0642313!10730-110B1;0.777946!10813-111B3;0.183513!10812-111B2;0.449325!10037-101F1;0.802226!10172-103C1;0.669914!10163-103B1;0.723743!10076-102A4;0.673109!10073-102A1;0.636875!10036-101E9;0.328113!10195-103E6;0.927298!10277-104E7;0.605977!10434-106E2;0.936545!10550-107I1;0.801182!10545-107H5;0.770568!10544-107H4;0.895898!10704-109H2;0.345212!10510-107D6;0.333677!10558-107I9;0.485645!10020-101D2;0.00303042!10732-110B3;0.0799126!10049-101G4;0.712925!10698-109G5;0.826892!10437-106E5;0.75006!10417-106C3;0.660343!10035-101E8;0.602554!10171-103B9;0.780393!10157-103A4;0.754712!10034-101E7;0.647886!10072-101I9;0.783074!10199-103F1;0.371568!10200-103F2;0.360285!10697-109G4;0.942611!10723-110A3;0.0678452!10179-103C8;0.802388!10160-103A7;0.334534!10180-103C9;0.296743!10162-103A9;0.520729!10021-101D3;0.569323!10840-111E3;0.534182!10706-109H4;0.628321!10033-101E6;0.386112!10032-101E5;0.909669!10490-107B4;0.852467!10439-106E7;0.440073!10022-101D4;0.450224!10176-103C5;0.605286!10469-106I1;0.773703!10067-101I4;0.635608!10411-106B6;0.662591!10471-106I3;0.790565!10030-101E3;0.923748!10475-106I7;0.536369!10787-110H4;0.237602!10477-106I9;0.272054!10695-109G2;0.0173944!11771-123I7;0.550362!11772-123I8;0.536954!11773-123I9;0.11759!10093-102C3;0.273252!10442-106F1;0.546952!10442-106F1;0.587496!10201-103F3;0.631469!10639-108I9;0.984505!11843-124H7;0.557326!11841-124H5;0.468359!10693-109F9;0.484487!10436-106E4;0.652937!10483-107A6;0.747369!10282-104F3;0.507637!10023-101D5;0.837814!10066-101I3;0.832299!10065-101I2;0.447457!10800-110I8;0.632848!10610-108F7;0.215988!10841-111E4;0.165737!10541-107H1;0.360928!10842-111E5;0.932702!10562-108A4;0.444809!10024-101D6;0.354867!10064-101I1;0.0949484!10609-108F6;0.730704!10048-101G3;0.956843!10781-110G7;0.344116!10181-103D1;0.653915!10159-103A6;0.289739!10056-101H2;0.325384!10737-110B8;0.314907!10025-101D7;0.0101521!10044-101F8;0.423697!10424-106D1;0.863247!10463-106H4;0.555746!10616-108G4;0.713603!10486-107A9;0.229618!10062-101H8;0.878437!10202-103F4;0.957376!10158-103A5;0.594922!10441-106E9;0.647074!10031-101E4;0.115287!10063-101H9;0.862422!10063-101H9;0.290907!11763-123H8;0.741439!11765-123I1;0.304203!11768-123I4;0.63448!10807-111A6;0.500036!10790-110H7;0.538908!10798-110I6;0.548204!10786-110H3;0.923732!10591-108D6;0.67534!10593-108D8;0.619437!10590-108D5;0.5096!10026-101D8;0.763125!10096-102C6;0.639308!10168-103B6;0.512824!10154-103A1;0.856623!10209-103G2;0.602323!10061-101H7;0.878935!10027-101D9;0.556133!10043-101F7;0.615851!10783-110G9;0.932559!10028-101E1;0.481232!10060-101H6;0.413544!10203-103F5;0.903122!10059-101H5;0.855936!10047-101G2;0.71425!10029-101E2;0.195527!10058-101H4;0.650425!10418-106C4;0.567047!10492-107B6;0.871838!10694-109G1;0.420112!10797-110I5;0.232772!10057-101H3;0.349632!10100-102D1;0.637682!10055-101H1;0.1836!10204-103F6;0.225891!10191-103E2;0.91073!10563-108A5;0.690957
|name=NR0B1_si
|name=NR0B1_si
|tomtom_result=ZMS1#MA0441.1;1;0.000447223;0.212878;0.241293;8;GCGTGGGAGA;TGCGGGGAA;-!Egr1#MA0162.1;1;0.000507582;0.241609;0.241293;10;GCGTGGGAGA;TGCGTGGGCGT;+!MZF1_5-13#MA0057.1;1;0.00119179;0.567294;0.311918;9;GCGTGGGAGA;GGAGGGGGAA;+!MIG1#MA0337.1;0;0.00152435;0.725591;0.311918;7;GCGTGGGAGA;GCGGGGG;-!YPR022C#MA0436.1;-1;0.00164037;0.780818;0.311918;7;GCGTGGGAGA;CGTGGGG;-!NHP10#MA0344.1;0;0.00285735;1.3601;0.452773;8;GCGTGGGAGA;GCCGGGGA;+!Su(H)#MA0085.1;0;0.0053629;2.55274;0.582982;10;GCGTGGGAGA;CTGTGGGAAACGAGAT;+!SP1#MA0079.2;-2;0.00544103;2.58993;0.582982;8;GCGTGGGAGA;GGGGGCGGGG;-!Pax4#MA0068.1;1;0.00599225;2.85231;0.582982;10;GCGTGGGAGA;GGGGGGGGAGTGGAGTATTGGAAATTTTTC;-!MZF1_1-4#MA0056.1;-2;0.00613179;2.91873;0.582982;6;GCGTGGGAGA;TGGGGA;+!YML081W#MA0431.1;2;0.00714446;3.40076;0.617511;7;GCGTGGGAGA;GTGCGGGGT;-!GAL4#MA0299.1;-1;0.00969934;4.61689;0.67372;9;GCGTGGGAGA;CGGGGAACAGTACTC;+!MIG2#MA0338.1;1;0.0106594;5.07389;0.67372;6;GCGTGGGAGA;TGCGGGG;-!UGA3#MA0410.1;0;0.0113085;5.38284;0.67372;8;GCGTGGGAGA;CGGCGGGA;+!MIG3#MA0339.1;1;0.0113223;5.3894;0.67372;6;GCGTGGGAGA;TGCGGGG;-!Trl#MA0205.1;0;0.0113379;5.39682;0.67372;10;GCGTGGGAGA;GAGAGAGCAA;-!SUT1#MA0399.1;1;0.0127576;6.07263;0.713492;6;GCGTGGGAGA;CGCGGGG;+!RSC30#MA0375.1;1;0.0157502;7.49708;0.831919;7;GCGTGGGAGA;CGCGCGCG;-!znf143#MA0088.1;8;0.0190794;9.08181;0.876505;10;GCGTGGGAGA;GCAAGGCATGATGGGAAATC;-!PPARG::RXRA#MA0065.2;0;0.0196926;9.3737;0.876505;10;GCGTGGGAGA;GTAGGGCAAAGGTCA;+!ADR1#MA0268.1;0;0.0202002;9.61531;0.876505;7;GCGTGGGAGA;GTGGGGT;-!z#MA0255.1;2;0.0202819;9.6542;0.876505;8;GCGTGGGAGA;TTGAGTGATT;+
}}
}}

Latest revision as of 14:37, 7 September 2012

Full Name: NR0B1_si

Motif matrix
POACGT
10.20723684210526332.2203947368421015.5361842105263121.036184210526312
23.07894736842105535.9210526315789450.00.0
30.9473684210526330.08.0526315789473680.0
41.0657894736842110.03.1973684210526334.736842105263156
50.00.09.00.0
60.01.7763157894736887.2236842105263120.0
71.8947368421052660.06.1578947368421020.947368421052633
86.8684210526315791.0657894736842111.0657894736842110.0
91.7763157894736883.31578947368421063.9078947368421010.0
105.0921052631578980.03.9078947368421010.0

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
ZMS1#MA0441.110.0004472230.2128780.2412938GCGTGGGAGATGCGGGGAA-
Egr1#MA0162.110.0005075820.2416090.24129310GCGTGGGAGATGCGTGGGCGT+
MZF1_5-13#MA0057.110.001191790.5672940.3119189GCGTGGGAGAGGAGGGGGAA+
MIG1#MA0337.100.001524350.7255910.3119187GCGTGGGAGAGCGGGGG-
YPR022C#MA0436.1-10.001640370.7808180.3119187GCGTGGGAGACGTGGGG-
NHP10#MA0344.100.002857351.36010.4527738GCGTGGGAGAGCCGGGGA+
Su(H)#MA0085.100.00536292.552740.58298210GCGTGGGAGACTGTGGGAAACGAGAT+
SP1#MA0079.2-20.005441032.589930.5829828GCGTGGGAGAGGGGGCGGGG-
Pax4#MA0068.110.005992252.852310.58298210GCGTGGGAGAGGGGGGGGAGTGGAGTATTGGAAATTTTTC-
MZF1_1-4#MA0056.1-20.006131792.918730.5829826GCGTGGGAGATGGGGA+
YML081W#MA0431.120.007144463.400760.6175117GCGTGGGAGAGTGCGGGGT-
GAL4#MA0299.1-10.009699344.616890.673729GCGTGGGAGACGGGGAACAGTACTC+
MIG2#MA0338.110.01065945.073890.673726GCGTGGGAGATGCGGGG-
UGA3#MA0410.100.01130855.382840.673728GCGTGGGAGACGGCGGGA+
MIG3#MA0339.110.01132235.38940.673726GCGTGGGAGATGCGGGG-
Trl#MA0205.100.01133795.396820.6737210GCGTGGGAGAGAGAGAGCAA-
SUT1#MA0399.110.01275766.072630.7134926GCGTGGGAGACGCGGGG+
RSC30#MA0375.110.01575027.497080.8319197GCGTGGGAGACGCGCGCG-
znf143#MA0088.180.01907949.081810.87650510GCGTGGGAGAGCAAGGCATGATGGGAAATC-
PPARG::RXRA#MA0065.200.01969269.37370.87650510GCGTGGGAGAGTAGGGCAAAGGTCA+
ADR1#MA0268.100.02020029.615310.8765057GCGTGGGAGAGTGGGGT-
z#MA0255.120.02028199.65420.8765058GCGTGGGAGATTGAGTGATT+
Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MacroAPE_1083:NR0B1_si&oldid=2134425"