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MacroAPE 1083:PAX8 f1: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;4.2923940149626025;7.8273067331671;14.672693266832917;10.127805486284279!2;3.0299251870324215;8.24812967581048;3.534912718204489;22.10723192...")
 
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11C8;0.667256!10789-110H6;0.364816!10828-111C9;0.0952208!10788-110H5;0.285173!10792-110H9;0.170313!10765-110E9;0.363011!10829-111D1;0.780903!10830-111D2;0.584099!10831-111D3;0.0107021!10832-111D4;0.531873!10833-111D5;0.476954!10764-110E8;0.57315!10770-110F5;0.412713!10399-106A3;0.0807806!10400-106A4;0.32201!10405-106A9;0.323504!10834-111D6;0.403727!10835-111D7;0.254757!10836-111D8;0.436802!10837-111D9;0.188628!10699-109G6;0.192822!10802-111A1;0.0360417!10796-110I4;0.429469!10010-101C1;0.749315!10810-111A9;0.671727!10421-106C7;0.498089!10708-109H6;0.966842!12235-129G3;0.546529!12236-129G4;0.0191495!12237-129G5;0.256894!10167-103B5;0.212991!10151-102I7;0.928072!10428-106D5;0.71922!10795-110I3;0.780258!10805-111A4;0.459051!10052-101G7;0.513183!10189-103D9;0.798889!10589-108D4;0.214881!10425-106D2;0.565299!10427-106D4;0.693747!10702-109G9;0.992739!10432-106D9;0.187503!10496-107C1;0.494723!10718-109I7;0.274627!10011-101C2;0.102895!10053-101G8;0.231274!10686-109F2;0.708135!10084-102B3;0.352962!10012-101C3;0.699215!10085-102B4;0.806925!10482-107A5;0.968295!10419-106C5;0.268915!10080-102A8;0.804254!10760-110E4;0.694148!10709-109H7;0.256721!10710-109H8;0.489658!10703-109H1;0.463486!10719-109I8;0.651664!10642-109A3;0.846411!10177-103C6;0.108854!10164-103B2;0.251425!10173-103C2;0.46908!10166-103B4;0.440431!10083-102B2;0.778433!10188-103D8;0.845468!10552-107I3;0.704038!10553-107I4;0.394147!10013-101C4;0.0750516!10536-107G5;0.223166!10618-108G6;0.639682!10423-106C9;0.123559!10785-110H2;0.0816768!12238-129G6;0.23422!12239-129G7;0.0321478!12240-129G8;0.0940835!10416-106C2;0.0842539!10801-110I9;0.836083!10766-110F1;0.546021!10824-111C5;0.65699!10825-111C6;0.750143!10826-111C7;0.783157!10454-106G4;0.878255!10409-106B4;0.69558!10638-108I8;0.426696!10636-108I6;0.710455!10513-107D9;0.421216!10420-106C6;0.298777!10082-102B1;0.673457!10014-101C5;0.0459927!10070-101I7;0.115071!10452-106G2;0.380471!10453-106G3;0.56868!10449-106F8;0.617398!10042-101F6;0.685665!10069-101I6;0.332152!10193-103E4;0.983996!10631-108I1;0.476964!10438-106E6;0.68441!10488-107B2;0.0283119!10196-103E7;0.887218!10071-101I8;0.463885!10071-101I8;0.624354!10041-101F5;0.607591!10451-106G1;0.549047!10450-106F9;0.5871!10604-108F1;0.690312!10605-108F2;0.927375!10606-108F3;0.951023!10603-108E9;0.677299!10497-107C2;0.838232!10448-106F7;0.529074!10643-109A4;0.0248633!10426-106D3;0.551222!10431-106D8;0.0474125!10197-103E8;0.144447!10443-106F2;0.531263!10815-111B5;0.511407!10816-111B6;0.522625!10817-111B7;0.415302!10015-101C6;0.644011!10410-106B5;0.371523!10054-101G9;0.855436!10758-110E2;0.104543!10711-109H9;0.379242!10040-101F4;0.65361!10470-106I2;0.773329!10415-106C1;0.0346437!10198-103E9;0.257449!10614-108G2;0.518153!10612-108F9;0.603013!10549-107H9;0.359066!10615-108G3;0.97169!10487-107B1;0.169054!10433-106E1;0.498119!10688-109F4;0.619953!10444-106F3;0.156227!10444-106F3;0.738923!10485-107A8;0.696245!10413-106B8;0.302421!10175-103C4;0.362602!10161-103A8;0.525554!12131-128D7;0.468739!10624-108H3;0.3567!10712-109I1;0.343453!10205-103F7;0.46703!10206-103F8;0.448236!10207-103F9;0.508542!10050-101G5;0.12674!10051-101G6;0.362785!10016-101C7;0.951501!10046-101G1;0.665272!10778-110G4;0.167493!10633-108I3;0.844415!10818-111B8;0.257857!10819-111B9;0.438459!10820-111C1;0.515425!10484-107A7;0.519316!10808-111A7;0.0558836!10169-103B7;0.941288!10153-102I9;0.668735!13425-144D5;0.460226!13433-144E4;0.112841!13437-144E8;0.0590878!11904-125F5;0.0961327!11905-125F6;0.723698!10039-101F3;0.379827!10791-110H8;0.84755!10017-101C8;0.803133!10045-101F9;0.0320288!10509-107D5;0.0383284!10839-111E2;0.577797!10692-109F8;0.729185!10079-102A7;0.685924!10078-102A6;0.939656!10721-110A1;0.878108!10569-108B2;0.381453!10570-108B3;0.844549!10571-108B4;0.810959!10647-109A8;0.967775!10752-110D5;0.0465432!10782-110G8;0.774775!10726-110A6;0.917678!10018-101C9;0.950012!10086-102B5;0.401079!10182-103D2;0.987395!10165-103B3;0.354841!10499-107C4;0.421539!10408-106B3;0.586912!10019-101D1;0.805998!10068-101I5;0.25378!10075-102A3;0.485565!10077-102A5;0.354748!10727-110A7;0.920272!10775-110G1;0.965319!10412-106B7;0.794101!12231-129F8;0.173453!12232-129F9;0.988708!12233-129G1;0.812528!12234-129G2;0.868192!10414-106B9;0.590627!10170-103B8;0.233662!10183-103D3;0.653172!10150-102I6;0.77823!10174-103C3;0.656214!10155-103A2;0.150112!10038-101F2;0.195814!10838-111E1;0.335984!10759-110E3;0.508775!10514-107E1;0.574373!10465-106H6;0.103728!10691-109F7;0.150024!10843-111E6;0.170608!10844-111E7;0.900129!11747-123G1;0.55044!11748-123G2;0.100692!11749-123G3;0.1371!11750-123G4;0.0640197!11751-123G5;0.306342!11840-124H4;0.129097!11752-123G6;0.162709!11753-123G7;0.71394!11754-123G8;0.602587!11755-123G9;0.546056!11756-123H1;0.413308!11833-124G6;0.726836!11760-123H5;0.242263!11836-124G9;0.515158!11758-123H3;0.148254!11835-124G8;0.0459569!11762-123H7;0.443249!11838-124H2;0.352855!11757-123H2;0.47167!11759-123H4;0.555303!11761-123H6;0.273207!11842-124H6;0.877849!11837-124H1;0.529423!10568-108B1;0.809753!13230-141I8;0.0177017!13231-141I9;0.208771!10696-109G3;0.106262!10493-107B7;0.772271!10494-107B8;0.371135!10850-111F4;0.639473!10851-111F5;0.619889!10852-111F6;0.752101!10853-111F7;0.842725!10854-111F8;0.0219485!10855-111F9;0.863092!10856-111G1;0.965314!10847-111F1;0.704296!10846-111E9;0.589681!10848-111F2;0.400666!10845-111E8;0.384341!10857-111G2;0.453717!10858-111G3;0.985093!10156-103A3;0.474295!11901-125F2;0.538653!11902-125F3;0.276421!11903-125F4;0.396562!10689-109F5;0.865!10648-109A9;0.127765!10784-110H1;0.468978!10744-110C6;0.722877!10772-110F7;0.793011!10474-106I6;0.720497!10600-108E6;0.435679!10684-109E9;0.739559!12226-129F3;0.0313562!12227-129F4;0.890497!10508-107D4;0.164879!10539-107G8;0.977777!10607-108F4;0.476963!10555-107I6;0.678186!10774-110F9;0.809295!10637-108I7;0.589007!10663-109C6;0.643968!10728-110A8;0.418543!10729-110A9;0.152154!10430-106D7;0.909846!10730-110B1;0.212593!10813-111B3;0.66954!10812-111B2;0.919448!10037-101F1;0.0183066!10172-103C1;0.583388!10163-103B1;0.584109!10076-102A4;0.616528!10073-102A1;0.783342!10036-101E9;0.616728!10195-103E6;0.729285!10277-104E7;0.624338!10434-106E2;0.500682!10550-107I1;0.11641!10545-107H5;0.34462!10544-107H4;0.207343!10704-109H2;0.496914!10510-107D6;0.90283!10558-107I9;0.0646332!10020-101D2;0.255594!10732-110B3;0.695212!10049-101G4;0.686045!10698-109G5;0.770966!10437-106E5;0.011447!10417-106C3;0.788836!10035-101E8;0.19787!10171-103B9;0.696157!10157-103A4;0.657104!10034-101E7;0.593786!10072-101I9;0.739761!10199-103F1;0.747655!10200-103F2;0.332353!10697-109G4;0.886168!10723-110A3;0.618743!10179-103C8;0.00429323!10160-103A7;0.162997!10180-103C9;0.547835!10162-103A9;0.466602!10021-101D3;0.453691!10840-111E3;0.290188!10706-109H4;0.486536!10033-101E6;0.285549!10032-101E5;0.571683!10490-107B4;0.794129!10439-106E7;0.724755!10022-101D4;0.403934!10176-103C5;0.392516!10469-106I1;0.504363!10067-101I4;0.0554483!10411-106B6;0.787918!10471-106I3;0.752726!10030-101E3;0.627577!10475-106I7;0.037425!10787-110H4;0.571557!10477-106I9;0.929033!10695-109G2;0.323226!11771-123I7;0.90736!11772-123I8;0.790049!11773-123I9;0.544274!10093-102C3;0.158722!10442-106F1;0.200483!10442-106F1;0.208363!10201-103F3;0.371388!10639-108I9;0.48207!11843-124H7;0.0251775!11841-124H5;0.144137!10693-109F9;0.199708!10436-106E4;0.171846!10483-107A6;0.159908!10282-104F3;0.32311!10023-101D5;0.652374!10066-101I3;0.602663!10065-101I2;0.914904!10800-110I8;0.902431!10610-108F7;0.558416!10841-111E4;0.224207!10541-107H1;0.71703!10842-111E5;0.03978!10562-108A4;0.991878!10024-101D6;0.137916!10064-101I1;0.112021!10609-108F6;0.753054!10048-101G3;0.260434!10781-110G7;0.361281!10181-103D1;0.386404!10159-103A6;0.436167!10056-101H2;0.1522!10737-110B8;0.616262!10025-101D7;0.630777!10044-101F8;0.971446!10424-106D1;0.961008!10463-106H4;0.178841!10616-108G4;0.280161!10486-107A9;0.393925!10062-101H8;0.703249!10202-103F4;0.794411!10158-103A5;0.120264!10441-106E9;0.231077!10031-101E4;0.215636!10063-101H9;0.73243!10063-101H9;0.548542!11763-123H8;0.651697!11765-123I1;0.242574!11768-123I4;0.193481!10807-111A6;0.104273!10790-110H7;0.0214903!10798-110I6;0.0607516!10786-110H3;0.664999!10591-108D6;0.222043!10593-108D8;0.423423!10590-108D5;0.214681!10026-101D8;0.275294!10096-102C6;0.197783!10168-103B6;0.188892!10154-103A1;0.481782!10209-103G2;0.371606!10061-101H7;0.396169!10027-101D9;0.979069!10043-101F7;0.0365011!10783-110G9;0.0252127!10028-101E1;0.633553!10060-101H6;0.455433!10203-103F5;0.423966!10059-101H5;0.338414!10047-101G2;0.852666!10029-101E2;0.0686867!10058-101H4;0.229425!10418-106C4;0.745336!10492-107B6;0.098434!10694-109G1;0.129737!10797-110I5;0.224044!10057-101H3;0.964933!10100-102D1;0.764417!10055-101H1;0.337678!10204-103F6;0.751178!10191-103E2;0.437991!10563-108A5;0.405294
|name=PAX8_f1
|name=PAX8_f1
|tomtom_result=Pax5#MA0014.1;2;4.88072e-08;2.32322e-05;4.64645e-05;14;GTCACTGAAGCGGG;GGAGCACTGAAGCGTAACCG;+!Pax6#MA0069.1;-2;5.35298e-05;0.0254802;0.0254802;12;GTCACTGAAGCGGG;AACTCATGCGTGAA;-!Pax4#MA0068.1;5;0.00206838;0.984549;0.656366;14;GTCACTGAAGCGGG;GGGGGGGGAGTGGAGTATTGGAAATTTTTC;-!z#MA0255.1;1;0.0043884;2.08888;1;9;GTCACTGAAGCGGG;AATCACTCAA;-!YGR067C#MA0425.1;-2;0.00531865;2.53168;1;12;GTCACTGAAGCGGG;TGAAAAAGTGGGGT;-!GCN4#MA0303.1;10;0.00916353;4.36184;1;11;GTCACTGAAGCGGG;CAAGGGATGAGTCATACTTCA;+!HAP3#MA0314.1;1;0.0101277;4.82079;1;14;GTCACTGAAGCGGG;TCTGATTGGTTCAGA;+!AP1#MA0099.2;-1;0.0108621;5.17035;1;7;GTCACTGAAGCGGG;TGACTCA;+!Tal1::Gata1#MA0140.1;5;0.0127345;6.06161;1;13;GTCACTGAAGCGGG;CTTATCTGTCCCCACCAG;-!Pax2#MA0067.1;1;0.0141097;6.7162;1;7;GTCACTGAAGCGGG;AGTCACGG;+!CG7056#MA0183.1;-1;0.0141097;6.7162;1;8;GTCACTGAAGCGGG;TAATTAAA;-!NFYA#MA0060.1;3;0.0162777;7.7482;1;13;GTCACTGAAGCGGG;GCGCTGATTGGCTGAG;-!vnd#MA0253.1;-3;0.0187899;8.94401;1;9;GTCACTGAAGCGGG;TTTCAAGTG;+
}}
}}

Latest revision as of 14:40, 7 September 2012

Full Name: PAX8_f1

Motif matrix
POACGT
14.29239401496260257.827306733167114.67269326683291710.127805486284279
23.02992518703242158.248129675810483.53491271820448922.107231920199496
39.08977556109727714.027431421446411.7830423940149772.0199501246882803
430.7481296758104962.58104738154613372.01995012468828031.5710723192019957
55.04987531172070916.6084788029925080.015.261845386533679
62.5249376558603515.891521197007471.571072319201995726.93266832917707
73.142144638403991516.1596009975062316.6084788029925081.009975062344142
817.1695760598503752.132169576059849414.4763092269326763.1421446384039915
915.82294264339150712.1197007481296674.9376558603491224.039900249376568
101.0099750623441428.30423940149627325.0810473815461632.524937655860351
115.27431421446384719.5261845386533820.012.119700748129667
1214.3640897755610874.03990024937656818.5162094763092460.0
130.03.59102244389027616.83291770573564616.49625935162096
1412.7088528678304262.048004987531173416.075436408977586.087905236907748

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
Pax5#MA0014.124.88072e-082.32322e-054.64645e-0514GTCACTGAAGCGGGGGAGCACTGAAGCGTAACCG+
Pax6#MA0069.1-25.35298e-050.02548020.025480212GTCACTGAAGCGGGAACTCATGCGTGAA-
Pax4#MA0068.150.002068380.9845490.65636614GTCACTGAAGCGGGGGGGGGGGAGTGGAGTATTGGAAATTTTTC-
z#MA0255.110.00438842.0888819GTCACTGAAGCGGGAATCACTCAA-
YGR067C#MA0425.1-20.005318652.53168112GTCACTGAAGCGGGTGAAAAAGTGGGGT-
GCN4#MA0303.1100.009163534.36184111GTCACTGAAGCGGGCAAGGGATGAGTCATACTTCA+
HAP3#MA0314.110.01012774.82079114GTCACTGAAGCGGGTCTGATTGGTTCAGA+
AP1#MA0099.2-10.01086215.1703517GTCACTGAAGCGGGTGACTCA+
Tal1::Gata1#MA0140.150.01273456.06161113GTCACTGAAGCGGGCTTATCTGTCCCCACCAG-
Pax2#MA0067.110.01410976.716217GTCACTGAAGCGGGAGTCACGG+
CG7056#MA0183.1-10.01410976.716218GTCACTGAAGCGGGTAATTAAA-
NFYA#MA0060.130.01627777.7482113GTCACTGAAGCGGGGCGCTGATTGGCTGAG-
vnd#MA0253.1-30.01878998.9440119GTCACTGAAGCGGGTTTCAAGTG+
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