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MacroAPE 1083:2-AATGCGTT: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;407.056;12.844;58.786;15.314!2;346.294;22.23;45.448;80.028!3;0.494;16.302;35.568;441.636!4;0.494;57.304;362.596;73.606!5;0.494;383.838;0.494...")
 
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342145!10429-106D6;0.159573!10464-106H5;0.369488!10827-111C8;0.946036!10789-110H6;0.207546!10828-111C9;0.243733!10788-110H5;0.0405632!10792-110H9;0.481074!10765-110E9;0.221123!10829-111D1;0.261077!10830-111D2;0.542161!10831-111D3;0.740974!10832-111D4;0.743178!10833-111D5;0.692394!10764-110E8;0.385112!10770-110F5;0.672086!10399-106A3;0.562402!10400-106A4;0.477902!10405-106A9;0.455845!10834-111D6;0.555068!10835-111D7;0.89486!10836-111D8;0.281547!10837-111D9;0.200789!10699-109G6;0.957889!10802-111A1;0.237293!10796-110I4;0.445883!10010-101C1;0.983416!10810-111A9;0.315267!10421-106C7;0.269295!10708-109H6;0.079135!12235-129G3;0.0205082!12236-129G4;0.269955!12237-129G5;0.104428!10167-103B5;0.387882!10151-102I7;0.217288!10428-106D5;0.418052!10795-110I3;0.750221!10805-111A4;0.62873!10052-101G7;0.937438!10189-103D9;0.527625!10589-108D4;0.953638!10425-106D2;0.133862!10427-106D4;0.855683!10702-109G9;0.0718354!10432-106D9;0.749392!10496-107C1;0.115756!10718-109I7;0.616956!10011-101C2;0.225367!10053-101G8;0.969605!10686-109F2;0.0818753!10084-102B3;0.0252723!10012-101C3;0.451446!10085-102B4;0.433943!10482-107A5;0.0905918!10419-106C5;0.181038!10080-102A8;0.281356!10760-110E4;0.91684!10709-109H7;0.366895!10710-109H8;0.206325!10703-109H1;0.187617!10719-109I8;0.237002!10642-109A3;0.0863551!10177-103C6;0.0250402!10164-103B2;0.348621!10173-103C2;0.438788!10166-103B4;0.321138!10083-102B2;0.479845!10188-103D8;0.32784!10552-107I3;0.319302!10553-107I4;0.888134!10013-101C4;0.292174!10536-107G5;0.74939!10618-108G6;0.905193!10423-106C9;0.127342!10785-110H2;0.18844!12238-129G6;0.999167!12239-129G7;0.244913!12240-129G8;0.246534!10416-106C2;0.570669!10801-110I9;0.568035!10766-110F1;0.369885!10824-111C5;0.21905!10825-111C6;0.316129!10826-111C7;0.3613!10454-106G4;0.42698!10409-106B4;0.4417!10638-108I8;0.490744!10636-108I6;0.65901!10513-107D9;0.001435!10420-106C6;0.330566!10082-102B1;0.886761!10014-101C5;0.588849!10070-101I7;0.942858!10452-106G2;0.380026!10453-106G3;0.722436!10449-106F8;0.903724!10042-101F6;0.928153!10069-101I6;0.759356!10193-103E4;0.532152!10631-108I1;0.450784!10438-106E6;0.731279!10488-107B2;0.126443!10196-103E7;0.204307!10071-101I8;0.519874!10071-101I8;0.943966!10041-101F5;0.0914!10451-106G1;0.542278!10450-106F9;0.491769!10604-108F1;0.157232!10605-108F2;0.0412426!10606-108F3;0.0860979!10603-108E9;0.0342015!10497-107C2;0.0480253!10448-106F7;0.81573!10643-109A4;0.865498!10426-106D3;0.280695!10431-106D8;0.311339!10197-103E8;0.195314!10443-106F2;0.441644!10815-111B5;0.024809!10816-111B6;0.637253!10817-111B7;0.48467!10015-101C6;0.70332!10410-106B5;0.602859!10054-101G9;0.436782!10758-110E2;0.809002!10711-109H9;0.00338648!10040-101F4;0.45859!10470-106I2;0.383683!10415-106C1;0.287596!10198-103E9;0.819553!10614-108G2;0.79672!10612-108F9;0.674916!10549-107H9;0.813839!10615-108G3;0.534351!10487-107B1;0.0249641!10433-106E1;0.993109!10688-109F4;0.205237!10444-106F3;0.29833!10444-106F3;0.0340958!10485-107A8;0.0204109!10413-106B8;0.0164954!10175-103C4;0.70365!10161-103A8;0.328525!12131-128D7;0.825198!10624-108H3;0.424691!10712-109I1;0.102953!10205-103F7;0.582689!10206-103F8;0.768446!10207-103F9;0.736!10050-101G5;0.739992!10051-101G6;0.457866!10016-101C7;0.341329!10046-101G1;0.77231!10778-110G4;0.922768!10633-108I3;0.947911!10818-111B8;0.269419!10819-111B9;0.657419!10820-111C1;0.609739!10484-107A7;0.645598!10808-111A7;0.833916!10169-103B7;0.935741!10153-102I9;0.280628!13425-144D5;0.422654!13433-144E4;0.158704!13437-144E8;0.0899708!11904-125F5;0.159152!11905-125F6;0.0739482!10039-101F3;0.199502!10791-110H8;0.374489!10017-101C8;0.304052!10045-101F9;0.803242!10509-107D5;0.332704!10839-111E2;0.70891!10692-109F8;0.514394!10079-102A7;0.134559!10078-102A6;0.833703!10721-110A1;0.857864!10569-108B2;0.082305!10570-108B3;0.49823!10571-108B4;0.232885!10647-109A8;0.66617!10752-110D5;0.11516!10782-110G8;0.389566!10726-110A6;0.227783!10018-101C9;0.056859!10086-102B5;0.0681748!10182-103D2;0.201793!10165-103B3;0.314909!10499-107C4;0.402178!10408-106B3;0.75627!10019-101D1;0.139058!10068-101I5;0.317119!10075-102A3;0.717277!10077-102A5;0.263023!10727-110A7;0.464025!10775-110G1;0.092841!10412-106B7;0.197638!12231-129F8;0.585524!12232-129F9;0.222824!12233-129G1;0.302827!12234-129G2;0.33775!10414-106B9;0.291782!10170-103B8;0.747238!10183-103D3;0.269097!10150-102I6;0.296333!10174-103C3;0.459824!10155-103A2;0.509699!10038-101F2;0.572992!10838-111E1;0.421946!10759-110E3;0.117575!10514-107E1;0.294353!10465-106H6;0.967292!10691-109F7;0.793851!10843-111E6;0.53984!10844-111E7;0.36107!11747-123G1;0.327989!11748-123G2;0.576257!11749-123G3;0.863682!11750-123G4;0.301041!11751-123G5;0.364435!11840-124H4;0.456501!11752-123G6;0.774943!11753-123G7;0.490562!11754-123G8;0.868239!11755-123G9;0.471979!11756-123H1;0.801899!11833-124G6;0.123994!11760-123H5;0.230217!11836-124G9;0.36121!11758-123H3;0.076111!11835-124G8;0.643133!11762-123H7;0.619259!11838-124H2;0.0831715!11757-123H2;0.00309089!11759-123H4;0.025019!11761-123H6;0.875563!11842-124H6;0.0326013!11837-124H1;0.878091!10568-108B1;0.38702!13230-141I8;0.629271!13231-141I9;0.985903!10696-109G3;0.805226!10493-107B7;0.365124!10494-107B8;0.21603!10850-111F4;0.213029!10851-111F5;0.0968217!10852-111F6;0.499956!10853-111F7;0.282571!10854-111F8;0.388212!10855-111F9;0.09768!10856-111G1;0.232214!10847-111F1;0.103488!10846-111E9;0.00222727!10848-111F2;0.0026831!10845-111E8;0.0126005!10857-111G2;0.309734!10858-111G3;0.0615092!10156-103A3;0.749601!11901-125F2;0.43518!11902-125F3;0.0262361!11903-125F4;0.0270981!10689-109F5;0.0984789!10648-109A9;0.93812!10784-110H1;0.913589!10744-110C6;0.218055!10772-110F7;0.264775!10474-106I6;0.419142!10600-108E6;0.140203!10684-109E9;0.013388!12226-129F3;0.60663!12227-129F4;0.608602!10508-107D4;0.602593!10539-107G8;0.0524148!10607-108F4;0.220765!10555-107I6;0.321892!10774-110F9;0.0506791!10637-108I7;0.786308!10663-109C6;0.35206!10728-110A8;0.00574467!10729-110A9;0.375546!10430-106D7;0.903575!10730-110B1;0.540427!10813-111B3;0.193478!10812-111B2;0.609642!10037-101F1;0.495339!10172-103C1;0.410212!10163-103B1;0.265379!10076-102A4;0.527598!10073-102A1;0.382894!10036-101E9;0.103681!10195-103E6;0.39578!10277-104E7;0.34618!10434-106E2;0.971656!10550-107I1;0.625482!10545-107H5;0.259391!10544-107H4;0.124731!10704-109H2;0.00354859!10510-107D6;0.691312!10558-107I9;0.205947!10020-101D2;0.744477!10732-110B3;0.850528!10049-101G4;0.654272!10698-109G5;0.480295!10437-106E5;0.367033!10417-106C3;0.103868!10035-101E8;0.103279!10171-103B9;0.41685!10157-103A4;0.304112!10034-101E7;0.429611!10072-101I9;0.410215!10199-103F1;0.0636391!10200-103F2;0.0924362!10697-109G4;0.42445!10723-110A3;0.693627!10179-103C8;0.0728878!10160-103A7;0.673457!10180-103C9;0.593898!10162-103A9;0.140269!10021-101D3;0.239507!10840-111E3;0.61319!10706-109H4;0.142888!10033-101E6;0.131575!10032-101E5;0.539264!10490-107B4;0.386611!10439-106E7;0.493416!10022-101D4;0.206146!10176-103C5;0.942465!10469-106I1;0.45287!10067-101I4;0.364882!10411-106B6;0.0798537!10471-106I3;0.0820498!10030-101E3;0.627835!10475-106I7;0.994759!10787-110H4;0.217967!10477-106I9;0.651032!10695-109G2;0.999321!11771-123I7;0.605645!11772-123I8;0.790908!11773-123I9;0.275506!10093-102C3;0.56587!10442-106F1;0.172411!10442-106F1;0.889676!10201-103F3;0.886243!10639-108I9;0.963263!11843-124H7;0.261221!11841-124H5;0.237978!10693-109F9;0.150634!10436-106E4;0.0906377!10483-107A6;0.80743!10282-104F3;0.320002!10023-101D5;0.2323!10066-101I3;0.234694!10065-101I2;0.469542!10800-110I8;0.46725!10610-108F7;0.663739!10841-111E4;0.0575673!10541-107H1;0.0841464!10842-111E5;0.809508!10562-108A4;0.237219!10024-101D6;0.424253!10064-101I1;0.486941!10609-108F6;0.539719!10048-101G3;0.166146!10781-110G7;0.557057!10181-103D1;0.478361!10159-103A6;0.269284!10056-101H2;0.550477!10737-110B8;0.241689!10025-101D7;0.67726!10044-101F8;0.403165!10424-106D1;0.364791!10463-106H4;0.0362971!10616-108G4;0.669177!10486-107A9;0.508715!10062-101H8;0.832692!10202-103F4;0.249826!10158-103A5;0.012119!10441-106E9;0.988004!10031-101E4;0.110769!10063-101H9;0.311945!10063-101H9;0.0592513!11763-123H8;0.872739!11765-123I1;0.441163!11768-123I4;0.367956!10807-111A6;0.935272!10790-110H7;0.958845!10798-110I6;0.877864!10786-110H3;0.864541!10591-108D6;0.500545!10593-108D8;0.88974!10590-108D5;0.419163!10026-101D8;0.988055!10096-102C6;0.343359!10168-103B6;0.246716!10154-103A1;0.416372!10209-103G2;0.627377!10061-101H7;0.101674!10027-101D9;0.304374!10043-101F7;0.247666!10783-110G9;0.420758!10028-101E1;0.0203426!10060-101H6;0.0755181!10203-103F5;0.307679!10059-101H5;0.181002!10047-101G2;0.284272!10029-101E2;0.221747!10058-101H4;0.363107!10418-106C4;0.315275!10492-107B6;0.00830964!10694-109G1;0.533663!10797-110I5;0.0859726!10057-101H3;0.102954!10100-102D1;0.922038!10055-101H1;0.724455!10204-103F6;0.497091!10191-103E2;0.983063!10563-108A5;0.650595
|name=2-AATGCGTT,CNhs12398,BestGuess:TEAD1.p2.SwissRegulon.nucfreq(0.665777336042668),T:494.0(21.54%),B:6046.5(13.10%),P:1e-28
|name=2-AATGCGTT,CNhs12398,BestGuess:TEAD1.p2.SwissRegulon.nucfreq(0.665777336042668),T:494.0(21.54%),B:6046.5(13.10%),P:1e-28
|tomtom_result=MBP1::SWI6#MA0330.1;0;0.00629467;2.99626;1;7;AATGCGTT;AACGCGT;-!TEAD1#MA0090.1;6;0.0130641;6.21853;1;6;AATGCGTT;CGGAGGAATGTG;-
}}
}}

Latest revision as of 14:41, 7 September 2012

Full Name: 2-AATGCGTT,CNhs12398,BestGuess:TEAD1.p2.SwissRegulon.nucfreq(0.665777336042668),T:494.0(21.54%),B:6046.5(13.10%),P:1e-28

Motif matrix
POACGT
1407.05612.84458.78615.314
2346.29422.2345.44880.028
30.49416.30235.568441.636
40.49457.304362.59673.606
50.494383.8380.494109.174
677.5580.494415.4540.494
798.3060.494144.248250.952
815.314105.716142.766230.698

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
MBP1::SWI6#MA0330.100.006294672.9962617AATGCGTTAACGCGT-
TEAD1#MA0090.160.01306416.2185316AATGCGTTCGGAGGAATGTG-
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