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MacroAPE 1083:10-TCCTCCGATT: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;127.942;77.486;118.932;1477.64!2;122.536;1475.838;144.16;59.466!3;102.714;1497.462;61.268;140.556!4;172.992;93.704;81.09;1454.214!5;88.298;1...")
 
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0828-111C9;0.134482!10788-110H5;0.311532!10792-110H9;0.0887877!10765-110E9;0.0361644!10829-111D1;0.0321869!10830-111D2;0.139263!10831-111D3;0.0459458!10832-111D4;0.189691!10833-111D5;0.0487869!10764-110E8;0.0473112!10770-110F5;0.160645!10399-106A3;0.105782!10400-106A4;0.201743!10405-106A9;0.203199!10834-111D6;0.243841!10835-111D7;0.145743!10836-111D8;0.470484!10837-111D9;0.53058!10699-109G6;0.0819597!10802-111A1;0.172412!10796-110I4;0.273962!10010-101C1;0.240608!10810-111A9;0.295611!10421-106C7;0.953961!10708-109H6;0.83224!12235-129G3;0.723082!12236-129G4;0.161198!12237-129G5;0.531756!10167-103B5;0.188959!10151-102I7;0.322283!10428-106D5;0.261353!10795-110I3;0.93728!10805-111A4;0.600434!10052-101G7;0.613142!10189-103D9;0.374184!10589-108D4;0.313589!10425-106D2;0.171529!10427-106D4;0.867416!10702-109G9;0.508899!10432-106D9;0.518703!10496-107C1;0.566457!10718-109I7;0.752395!10011-101C2;0.0501993!10053-101G8;0.126298!10686-109F2;0.558923!10084-102B3;0.397138!10012-101C3;0.507212!10085-102B4;0.385644!10482-107A5;0.352634!10419-106C5;0.312796!10080-102A8;0.780245!10760-110E4;0.190845!10709-109H7;0.851003!10710-109H8;0.759258!10703-109H1;0.434023!10719-109I8;0.601849!10642-109A3;0.662538!10177-103C6;0.453595!10164-103B2;0.319445!10173-103C2;0.199227!10166-103B4;0.588624!10083-102B2;0.506271!10188-103D8;0.674319!10552-107I3;0.253276!10553-107I4;0.364754!10013-101C4;0.531954!10536-107G5;0.338638!10618-108G6;0.0374164!10423-106C9;0.205357!10785-110H2;0.185682!12238-129G6;0.106589!12239-129G7;0.795308!12240-129G8;0.72014!10416-106C2;0.29405!10801-110I9;0.169794!10766-110F1;0.139985!10824-111C5;0.0708143!10825-111C6;0.927917!10826-111C7;0.947424!10454-106G4;0.85571!10409-106B4;0.833574!10638-108I8;0.0845006!10636-108I6;0.59384!10513-107D9;0.644124!10420-106C6;0.176215!10082-102B1;0.792749!10014-101C5;0.584275!10070-101I7;0.56817!10452-106G2;0.851982!10453-106G3;0.892286!10449-106F8;0.816158!10042-101F6;0.790963!10069-101I6;0.485506!10193-103E4;0.99733!10631-108I1;0.424932!10438-106E6;0.107347!10488-107B2;0.990177!10196-103E7;0.911462!10071-101I8;0.598005!10071-101I8;0.949435!10041-101F5;0.268908!10451-106G1;0.267657!10450-106F9;0.106876!10604-108F1;0.71547!10605-108F2;0.228071!10606-108F3;0.657926!10603-108E9;0.351138!10497-107C2;0.804179!10448-106F7;0.990396!10643-109A4;0.703714!10426-106D3;0.875129!10431-106D8;0.741003!10197-103E8;0.984781!10443-106F2;0.914388!10815-111B5;0.423792!10816-111B6;0.338698!10817-111B7;0.384063!10015-101C6;0.406669!10410-106B5;0.212588!10054-101G9;0.638029!10758-110E2;0.688965!10711-109H9;0.648255!10040-101F4;0.730729!10470-106I2;0.355144!10415-106C1;0.322865!10198-103E9;0.741183!10614-108G2;0.106142!10612-108F9;0.992099!10549-107H9;0.727697!10615-108G3;0.504924!10487-107B1;0.456654!10433-106E1;0.692608!10688-109F4;0.298742!10444-106F3;0.2297!10444-106F3;0.301568!10485-107A8;0.312068!10413-106B8;0.988117!10175-103C4;0.977122!10161-103A8;0.470474!12131-128D7;0.41339!10624-108H3;0.773723!10712-109I1;0.522428!10205-103F7;0.260422!10206-103F8;0.271335!10207-103F9;0.31473!10050-101G5;0.0539183!10051-101G6;0.901893!10016-101C7;0.773433!10046-101G1;0.321718!10778-110G4;0.344453!10633-108I3;0.658969!10818-111B8;0.4625!10819-111B9;0.193227!10820-111C1;0.163812!10484-107A7;0.203206!10808-111A7;0.918896!10169-103B7;0.825709!10153-102I9;0.269363!13425-144D5;0.261052!13433-144E4;0.63078!13437-144E8;0.808436!11904-125F5;0.760177!11905-125F6;0.654061!10039-101F3;0.980029!10791-110H8;0.343069!10017-101C8;0.964924!10045-101F9;0.756092!10509-107D5;0.610008!10839-111E2;0.902793!10692-109F8;0.205255!10079-102A7;0.872566!10078-102A6;0.529209!10721-110A1;0.811626!10569-108B2;0.230998!10570-108B3;0.967148!10571-108B4;0.743695!10647-109A8;0.424577!10752-110D5;0.0196071!10782-110G8;0.216835!10726-110A6;0.424641!10018-101C9;0.903044!10086-102B5;0.261401!10182-103D2;0.531104!10165-103B3;0.325533!10499-107C4;0.527735!10408-106B3;0.887299!10019-101D1;0.592497!10068-101I5;0.941722!10075-102A3;0.459396!10077-102A5;0.723819!10727-110A7;0.933948!10775-110G1;0.48345!10412-106B7;0.248578!12231-129F8;0.54159!12232-129F9;0.00682149!12233-129G1;0.0607066!12234-129G2;0.0371598!10414-106B9;0.00459741!10170-103B8;0.941963!10183-103D3;0.234474!10150-102I6;0.410494!10174-103C3;0.226745!10155-103A2;0.552594!10038-101F2;0.445634!10838-111E1;0.469448!10759-110E3;0.851766!10514-107E1;0.777506!10465-106H6;0.359797!10691-109F7;0.314573!10843-111E6;0.819029!10844-111E7;0.57825!11747-123G1;0.526926!11748-123G2;0.555838!11749-123G3;0.863163!11750-123G4;0.733713!11751-123G5;0.598931!11840-124H4;0.814407!11752-123G6;0.987332!11753-123G7;0.431996!11754-123G8;0.198442!11755-123G9;0.554066!11756-123H1;0.498863!11833-124G6;0.272144!11760-123H5;0.647196!11836-124G9;0.494531!11758-123H3;0.396404!11835-124G8;0.205216!11762-123H7;0.654903!11838-124H2;0.952649!11757-123H2;0.394199!11759-123H4;0.276415!11761-123H6;0.559179!11842-124H6;0.213067!11837-124H1;0.741598!10568-108B1;0.947783!13230-141I8;0.80517!13231-141I9;0.574361!10696-109G3;0.523772!10493-107B7;0.0392887!10494-107B8;0.274564!10850-111F4;0.200205!10851-111F5;0.538329!10852-111F6;0.454181!10853-111F7;0.11115!10854-111F8;0.889745!10855-111F9;0.688933!10856-111G1;0.651012!10847-111F1;0.380569!10846-111E9;0.838697!10848-111F2;0.749672!10845-111E8;0.201119!10857-111G2;0.408185!10858-111G3;0.113105!10156-103A3;0.900387!11901-125F2;0.276137!11902-125F3;0.167115!11903-125F4;0.167224!10689-109F5;0.118478!10648-109A9;0.634728!10784-110H1;0.488867!10744-110C6;0.48369!10772-110F7;0.434046!10474-106I6;0.116029!10600-108E6;0.544643!10684-109E9;0.792036!12226-129F3;0.90006!12227-129F4;0.900612!10508-107D4;0.305998!10539-107G8;0.959646!10607-108F4;0.670069!10555-107I6;0.219509!10774-110F9;0.941026!10637-108I7;0.0550046!10663-109C6;0.693645!10728-110A8;0.370468!10729-110A9;0.916466!10430-106D7;0.533577!10730-110B1;0.459201!10813-111B3;0.53252!10812-111B2;0.440318!10037-101F1;0.552211!10172-103C1;0.285207!10163-103B1;0.271657!10076-102A4;0.219118!10073-102A1;0.372363!10036-101E9;0.339423!10195-103E6;0.353013!10277-104E7;0.377064!10434-106E2;0.708701!10550-107I1;0.0991241!10545-107H5;0.479124!10544-107H4;0.844574!10704-109H2;0.834357!10510-107D6;0.142782!10558-107I9;0.00541602!10020-101D2;0.807453!10732-110B3;0.585809!10049-101G4;0.325751!10698-109G5;0.937251!10437-106E5;0.146747!10417-106C3;0.358813!10035-101E8;0.59103!10171-103B9;0.316365!10157-103A4;0.369356!10034-101E7;0.279974!10072-101I9;0.339365!10199-103F1;0.320284!10200-103F2;0.682596!10697-109G4;0.436648!10723-110A3;0.266874!10179-103C8;0.36754!10160-103A7;0.437971!10180-103C9;0.247714!10162-103A9;0.298048!10021-101D3;0.210297!10840-111E3;0.647662!10706-109H4;0.508026!10033-101E6;0.282208!10032-101E5;0.407132!10490-107B4;0.368537!10439-106E7;0.356454!10022-101D4;0.32065!10176-103C5;0.166199!10469-106I1;0.210154!10067-101I4;0.932994!10411-106B6;0.580445!10471-106I3;0.963262!10030-101E3;0.278936!10475-106I7;0.41386!10787-110H4;0.797876!10477-106I9;0.744496!10695-109G2;0.354274!11771-123I7;0.1052!11772-123I8;0.670307!11773-123I9;0.396435!10093-102C3;0.129825!10442-106F1;0.906987!10442-106F1;0.926894!10201-103F3;0.56495!10639-108I9;0.76673!11843-124H7;0.578415!11841-124H5;0.783208!10693-109F9;0.978684!10436-106E4;0.0316417!10483-107A6;0.308861!10282-104F3;0.932172!10023-101D5;0.832635!10066-101I3;0.810994!10065-101I2;0.880963!10800-110I8;0.453375!10610-108F7;0.93653!10841-111E4;0.277589!10541-107H1;0.753534!10842-111E5;0.790186!10562-108A4;0.709468!10024-101D6;0.195818!10064-101I1;0.398392!10609-108F6;0.839239!10048-101G3;0.994758!10781-110G7;0.185178!10181-103D1;0.469527!10159-103A6;0.484216!10056-101H2;0.509048!10737-110B8;0.603584!10025-101D7;0.111733!10044-101F8;0.874177!10424-106D1;0.698441!10463-106H4;0.331705!10616-108G4;0.440045!10486-107A9;0.67867!10062-101H8;0.494354!10202-103F4;0.398603!10158-103A5;0.574649!10441-106E9;0.590185!10031-101E4;0.108747!10063-101H9;0.373978!10063-101H9;0.240893!11763-123H8;0.992142!11765-123I1;0.470671!11768-123I4;0.518458!10807-111A6;0.7849!10790-110H7;0.402085!10798-110I6;0.633383!10786-110H3;0.604512!10591-108D6;0.357291!10593-108D8;0.0926531!10590-108D5;0.0578587!10026-101D8;0.585876!10096-102C6;0.365885!10168-103B6;0.294937!10154-103A1;0.488678!10209-103G2;0.383561!10061-101H7;0.993498!10027-101D9;0.864119!10043-101F7;0.830349!10783-110G9;0.53348!10028-101E1;0.791429!10060-101H6;0.304445!10203-103F5;0.690798!10059-101H5;0.80945!10047-101G2;0.919829!10029-101E2;0.610406!10058-101H4;0.464855!10418-106C4;0.746071!10492-107B6;0.890603!10694-109G1;0.732513!10797-110I5;0.0570413!10057-101H3;0.876106!10100-102D1;0.242126!10055-101H1;0.412751!10204-103F6;0.618968!10191-103E2;0.021229!10563-108A5;0.407516
|name=10-TCCTCCGATT,CNhs13795,BestGuess:Znf263(Zf)/K562-Znf263-ChIP-Seq/Homer(0.671867263860539),T:1802.0(40.57%),B:14207.3(32.43%),P:1e-29
|name=10-TCCTCCGATT,CNhs13795,BestGuess:Znf263(Zf)/K562-Znf263-ChIP-Seq/Homer(0.671867263860539),T:1802.0(40.57%),B:14207.3(32.43%),P:1e-29
|tomtom_result=YNR063W#MA0432.1;0;0.00323755;1.54107;1;8;TCCTCCGATT;ATCTCCGA;-!NFYA#MA0060.1;-1;0.00676156;3.2185;1;9;TCCTCCGATT;GCGCTGATTGGCTGAG;-!HAL9#MA0311.1;-2;0.00723307;3.44294;1;5;TCCTCCGATT;TTCCG;-!RDS2#MA0362.1;-2;0.00868145;4.13237;1;7;TCCTCCGATT;CCCCGAG;-!YLR278C#MA0430.1;0;0.00886558;4.22001;1;8;TCCTCCGATT;AACTCCGG;-!GABPA#MA0062.1;1;0.0113714;5.41279;1;9;TCCTCCGATT;CTCTTCCGGT;-!YLL054C#MA0429.1;0;0.0133406;6.35014;1;7;TCCTCCGATT;TCGGCCG;-!TEAD1#MA0090.1;5;0.0153227;7.29362;1;7;TCCTCCGATT;CACATTCCTCCG;+!PDR3#MA0353.1;0;0.0159085;7.57246;1;8;TCCTCCGATT;TCCGCGGA;+!HAP4#MA0315.1;2;0.0167425;7.96944;1;10;TCCTCCGATT;TCGCCTCTGATTGGT;-!SFL1#MA0377.1;6;0.0180201;8.57757;1;10;TCCTCCGATT;TTTTATTTCTTCTATTCTCTA;-!PDR1#MA0352.1;0;0.0197297;9.39134;1;8;TCCTCCGATT;TCCGCGGA;+
}}
}}

Latest revision as of 14:42, 7 September 2012

Full Name: 10-TCCTCCGATT,CNhs13795,BestGuess:Znf263(Zf)/K562-Znf263-ChIP-Seq/Homer(0.671867263860539),T:1802.0(40.57%),B:14207.3(32.43%),P:1e-29

Motif matrix
POACGT
1127.94277.486118.9321477.64
2122.5361475.838144.1659.466
3102.7141497.46261.268140.556
4172.99293.70481.091454.214
588.2981497.46288.298127.942
659.4661477.64135.15129.744
7113.526183.8041358.708145.962
81401.956129.744131.546138.754
9270.3108.12117.131306.45
10117.13151.36854.061479.442

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation

YNR063W#MA0432.100.003237551.5410718TCCTCCGATTATCTCCGA-
NFYA#MA0060.1-10.006761563.218519TCCTCCGATTGCGCTGATTGGCTGAG-
HAL9#MA0311.1-20.007233073.4429415TCCTCCGATTTTCCG-
RDS2#MA0362.1-20.008681454.1323717TCCTCCGATTCCCCGAG-
YLR278C#MA0430.100.008865584.2200118TCCTCCGATTAACTCCGG-
GABPA#MA0062.110.01137145.4127919TCCTCCGATTCTCTTCCGGT-
YLL054C#MA0429.100.01334066.3501417TCCTCCGATTTCGGCCG-
TEAD1#MA0090.150.01532277.2936217TCCTCCGATTCACATTCCTCCG+
PDR3#MA0353.100.01590857.5724618TCCTCCGATTTCCGCGGA+
HAP4#MA0315.120.01674257.96944110TCCTCCGATTTCGCCTCTGATTGGT-
SFL1#MA0377.160.01802018.57757110TCCTCCGATTTTTTATTTCTTCTATTCTCTA-
PDR1#MA0352.100.01972979.3913418TCCTCCGATTTCCGCGGA+