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MacroAPE 1083:8-MHRGTVACTTBN: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;731.063;604.732;318.934;416.271!2;714.495;561.241;333.431;461.833!3;994.08;2.071;1072.778;2.071!4;2.071;532.247;1534.611;2.071!5;497.04;372....")
 
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;0.847602!12179-129A1;0.728141!12180-129A2;7.78643e-05!12181-129A3;2.47869e-05!12176-128I7;8.12657e-06!12177-128I8;0.000130437!12182-129A4;0.000183846!12183-129A5;5.1366e-05!12184-129A6;9.09394e-05!10809-111A8;0.000206697!10597-108E3;0.224581!10717-109I6;0.165051!10455-106G5;0.158443!10534-107G3;0.0816363!10429-106D6;0.327398!10464-106H5;0.835808!10827-111C8;0.457656!10789-110H6;0.17909!10828-111C9;0.00763657!10788-110H5;0.00026423!10792-110H9;0.294087!10765-110E9;0.00950331!10829-111D1;0.111798!10830-111D2;0.535468!10831-111D3;0.317967!10832-111D4;0.180618!10833-111D5;0.325228!10764-110E8;0.167421!10770-110F5;0.0330308!10399-106A3;0.083383!10400-106A4;0.148948!10405-106A9;0.0716663!10834-111D6;0.0805369!10835-111D7;0.168159!10836-111D8;0.0671498!10837-111D9;0.39414!10699-109G6;0.0530661!10802-111A1;0.194232!10796-110I4;0.378594!10010-101C1;0.288555!10810-111A9;0.0830358!10421-106C7;0.124988!10708-109H6;0.549881!12235-129G3;0.0368466!12236-129G4;0.0865476!12237-129G5;0.405819!10167-103B5;0.0554819!10151-102I7;0.238582!10428-106D5;0.327002!10795-110I3;0.729691!10805-111A4;0.27526!10052-101G7;0.0100167!10189-103D9;0.941305!10589-108D4;0.0100467!10425-106D2;0.00272693!10427-106D4;0.182892!10702-109G9;0.00191134!10432-106D9;0.0914761!10496-107C1;0.560649!10718-109I7;0.945565!10011-101C2;0.0446015!10053-101G8;0.785017!10686-109F2;0.00111408!10084-102B3;0.20683!10012-101C3;0.0536991!10085-102B4;0.295419!10482-107A5;0.130457!10419-106C5;0.262711!10080-102A8;0.116779!10760-110E4;0.214675!10709-109H7;0.516104!10710-109H8;0.102545!10703-109H1;0.298444!10719-109I8;0.00254274!10642-109A3;4.72608e-05!10177-103C6;0.00734884!10164-103B2;0.17346!10173-103C2;0.148614!10166-103B4;0.103607!10083-102B2;0.158105!10188-103D8;0.0305828!10552-107I3;0.214454!10553-107I4;0.0747388!10013-101C4;0.605067!10536-107G5;0.543!10618-108G6;0.365804!10423-106C9;0.0142794!10785-110H2;0.00663745!12238-129G6;0.00810978!12239-129G7;0.751731!12240-129G8;0.01206!10416-106C2;0.497935!10801-110I9;0.80508!10766-110F1;0.0167285!10824-111C5;0.0254051!10825-111C6;0.872555!10826-111C7;0.79847!10454-106G4;0.853227!10409-106B4;0.496992!10638-108I8;0.0370548!10636-108I6;0.811781!10513-107D9;0.371791!10420-106C6;0.0124916!10082-102B1;0.0128994!10014-101C5;0.92936!10070-101I7;0.815996!10452-106G2;0.837912!10453-106G3;0.224081!10449-106F8;0.527967!10042-101F6;0.426686!10069-101I6;0.408664!10193-103E4;0.888036!10631-108I1;0.231133!10438-106E6;0.845458!10488-107B2;0.0778269!10196-103E7;0.212335!10071-101I8;0.0542977!10071-101I8;0.702358!10041-101F5;0.122215!10451-106G1;0.0985666!10450-106F9;0.332715!10604-108F1;0.181578!10605-108F2;0.430464!10606-108F3;0.504313!10603-108E9;0.976215!10497-107C2;0.669821!10448-106F7;0.800757!10643-109A4;0.565947!10426-106D3;0.0922113!10431-106D8;0.567888!10197-103E8;0.601071!10443-106F2;0.889357!10815-111B5;0.412442!10816-111B6;0.0839449!10817-111B7;0.164228!10015-101C6;0.158654!10410-106B5;0.70665!10054-101G9;0.18576!10758-110E2;0.254497!10711-109H9;0.338001!10040-101F4;0.589322!10470-106I2;0.1597!10415-106C1;0.0686483!10198-103E9;0.821319!10614-108G2;0.710348!10612-108F9;0.110235!10549-107H9;0.244314!10615-108G3;0.123661!10487-107B1;0.278716!10433-106E1;0.773095!10688-109F4;0.547425!10444-106F3;0.0856732!10444-106F3;0.395869!10485-107A8;0.405577!10413-106B8;0.071199!10175-103C4;0.0855399!10161-103A8;0.294614!12131-128D7;0.894685!10624-108H3;0.399883!10712-109I1;0.0220716!10205-103F7;0.00977623!10206-103F8;0.788006!10207-103F9;0.851905!10050-101G5;0.00166683!10051-101G6;0.719829!10016-101C7;0.793146!10046-101G1;0.329022!10778-110G4;0.737492!10633-108I3;0.0629113!10818-111B8;0.00715172!10819-111B9;0.00338738!10820-111C1;0.0027843!10484-107A7;0.00406151!10808-111A7;0.450074!10169-103B7;0.792988!10153-102I9;0.334844!13425-144D5;0.430418!13433-144E4;0.0558377!13437-144E8;0.0749811!11904-125F5;0.136571!11905-125F6;0.000167563!10039-101F3;0.0599331!10791-110H8;0.119787!10017-101C8;0.530571!10045-101F9;0.272601!10509-107D5;0.61831!10839-111E2;0.446024!10692-109F8;0.51526!10079-102A7;0.0486242!10078-102A6;0.316115!10721-110A1;0.204521!10569-108B2;0.0120824!10570-108B3;0.384015!10571-108B4;0.260103!10647-109A8;0.436001!10752-110D5;0.466026!10782-110G8;0.0405771!10726-110A6;0.41497!10018-101C9;0.0065615!10086-102B5;0.466756!10182-103D2;0.340924!10165-103B3;0.235057!10499-107C4;0.479592!10408-106B3;0.736587!10019-101D1;0.329835!10068-101I5;0.00501281!10075-102A3;0.0440532!10077-102A5;0.000208049!10727-110A7;7.50731e-05!10775-110G1;0.432585!10412-106B7;0.000360056!12231-129F8;0.781431!12232-129F9;0.577808!12233-129G1;0.235583!12234-129G2;0.500552!10414-106B9;0.603448!10170-103B8;0.00908881!10183-103D3;0.158558!10150-102I6;0.160503!10174-103C3;0.417665!10155-103A2;0.305818!10038-101F2;0.808959!10838-111E1;0.386902!10759-110E3;0.0828292!10514-107E1;0.990683!10465-106H6;0.995035!10691-109F7;0.184827!10843-111E6;0.872578!10844-111E7;0.00909373!11747-123G1;0.0393082!11748-123G2;0.115714!11749-123G3;0.0156558!11750-123G4;0.361681!11751-123G5;0.571952!11840-124H4;0.183852!11752-123G6;0.26409!11753-123G7;0.733926!11754-123G8;0.524736!11755-123G9;0.685127!11756-123H1;0.530549!11833-124G6;0.762227!11760-123H5;0.354569!11836-124G9;0.8917!11758-123H3;0.578768!11835-124G8;0.371789!11762-123H7;0.225637!11838-124H2;0.127128!11757-123H2;0.353794!11759-123H4;0.915833!11761-123H6;0.856844!11842-124H6;0.88847!11837-124H1;0.46265!10568-108B1;0.533908!13230-141I8;0.0941891!13231-141I9;0.101042!10696-109G3;0.0855947!10493-107B7;0.966892!10494-107B8;0.259788!10850-111F4;0.18755!10851-111F5;0.0777976!10852-111F6;0.388797!10853-111F7;0.439364!10854-111F8;0.395859!10855-111F9;0.0185373!10856-111G1;0.00329898!10847-111F1;0.179547!10846-111E9;0.539314!10848-111F2;0.410203!10845-111E8;0.745765!10857-111G2;0.849555!10858-111G3;0.000924491!10156-103A3;0.94317!11901-125F2;0.390157!11902-125F3;0.0411079!11903-125F4;0.0338419!10689-109F5;0.0103778!10648-109A9;0.0888115!10784-110H1;0.14369!10744-110C6;0.973005!10772-110F7;0.0185633!10474-106I6;0.0429292!10600-108E6;0.00372221!10684-109E9;0.194249!12226-129F3;0.873817!12227-129F4;0.223275!10508-107D4;0.689962!10539-107G8;0.00362626!10607-108F4;0.0333147!10555-107I6;0.0245527!10774-110F9;0.00711254!10637-108I7;0.0174277!10663-109C6;0.367834!10728-110A8;0.084325!10729-110A9;0.0302329!10430-106D7;0.0123759!10730-110B1;0.548552!10813-111B3;0.286187!10812-111B2;0.350787!10037-101F1;0.0624153!10172-103C1;0.117049!10163-103B1;0.127289!10076-102A4;0.590485!10073-102A1;0.110453!10036-101E9;0.170476!10195-103E6;0.091853!10277-104E7;0.104127!10434-106E2;0.0601102!10550-107I1;0.271516!10545-107H5;0.107147!10544-107H4;0.82321!10704-109H2;0.429546!10510-107D6;0.813775!10558-107I9;0.219855!10020-101D2;0.00357376!10732-110B3;0.986286!10049-101G4;0.00658178!10698-109G5;0.0402669!10437-106E5;0.00178777!10417-106C3;0.538257!10035-101E8;0.827534!10171-103B9;0.12354!10157-103A4;0.0757482!10034-101E7;0.394078!10072-101I9;0.112251!10199-103F1;0.149103!10200-103F2;0.415105!10697-109G4;0.990675!10723-110A3;0.184984!10179-103C8;0.657533!10160-103A7;0.376998!10180-103C9;0.966544!10162-103A9;0.128618!10021-101D3;0.587644!10840-111E3;0.217012!10706-109H4;0.0105396!10033-101E6;0.157533!10032-101E5;0.206035!10490-107B4;0.0973215!10439-106E7;0.0314216!10022-101D4;0.831178!10176-103C5;0.777219!10469-106I1;0.103688!10067-101I4;0.0123174!10411-106B6;0.291173!10471-106I3;0.507042!10030-101E3;0.232243!10475-106I7;0.745412!10787-110H4;0.0183434!10477-106I9;0.155095!10695-109G2;0.186966!11771-123I7;0.0523308!11772-123I8;0.673424!11773-123I9;0.664885!10093-102C3;0.503739!10442-106F1;0.233464!10442-106F1;0.518358!10201-103F3;0.705201!10639-108I9;0.412216!11843-124H7;0.379118!11841-124H5;0.750483!10693-109F9;0.62044!10436-106E4;0.0370622!10483-107A6;0.194218!10282-104F3;0.472099!10023-101D5;0.95165!10066-101I3;0.712413!10065-101I2;0.657797!10800-110I8;0.596293!10610-108F7;0.0049535!10841-111E4;0.00887!10541-107H1;0.196797!10842-111E5;0.0148627!10562-108A4;0.0197258!10024-101D6;0.246045!10064-101I1;0.929953!10609-108F6;0.587216!10048-101G3;0.367259!10781-110G7;0.727699!10181-103D1;0.175184!10159-103A6;0.519516!10056-101H2;0.898003!10737-110B8;0.0285958!10025-101D7;0.0706263!10044-101F8;2.62511e-05!10424-106D1;0.000661285!10463-106H4;0.000111788!10616-108G4;0.994268!10486-107A9;0.000179122!10062-101H8;0.552196!10202-103F4;0.629787!10158-103A5;0.935423!10441-106E9;0.984462!10031-101E4;0.21719!10063-101H9;0.0963768!10063-101H9;0.108695!11763-123H8;0.291686!11765-123I1;0.0658168!11768-123I4;0.0553606!10807-111A6;0.0113252!10790-110H7;0.106397!10798-110I6;0.218014!10786-110H3;0.478507!10591-108D6;0.105608!10593-108D8;0.0483652!10590-108D5;0.311154!10026-101D8;0.088215!10096-102C6;0.0430821!10168-103B6;0.000644157!10154-103A1;0.277385!10209-103G2;0.6731!10061-101H7;0.912258!10027-101D9;0.367319!10043-101F7;0.0876662!10783-110G9;0.0756791!10028-101E1;0.0196352!10060-101H6;0.655686!10203-103F5;0.368765!10059-101H5;0.77219!10047-101G2;0.53496!10029-101E2;0.0235183!10058-101H4;0.353393!10418-106C4;0.40017!10492-107B6;0.957344!10694-109G1;0.21119!10797-110I5;0.0181201!10057-101H3;0.249555!10100-102D1;0.102132!10055-101H1;0.957028!10204-103F6;0.364231!10191-103E2;0.331676!10563-108A5;0.0454496
|name=8-MHRGTVACTTBN,CNhs13480,BestGuess:NKX25_f1_HM09(0.726382454185237),T:2071.0(45.46%),B:15467.5(35.46%),P:1e-43
|name=8-MHRGTVACTTBN,CNhs13480,BestGuess:NKX25_f1_HM09(0.726382454185237),T:2071.0(45.46%),B:15467.5(35.46%),P:1e-43
|tomtom_result=ABF1#MA0265.1;-1;0.00113857;0.541961;0.856752;11;AAGGTCACTTCC;ATATCACTTTATACGA;-!Nkx3-2#MA0122.1;-3;0.0017999;0.856752;0.856752;9;AAGGTCACTTCC;TCCACTTAA;-!GABPA#MA0062.2;-3;0.00270968;1.28981;0.859873;9;AAGGTCACTTCC;GCCACTTCCGG;-!En1#MA0027.1;-2;0.00631279;3.00489;1;10;AAGGTCACTTCC;GAACACTACTT;-!ESR1#MA0112.1;6;0.00781982;3.72223;1;12;AAGGTCACTTCC;GGGGTCACGGTGACCTGG;-!Gfi#MA0038.1;-1;0.0144957;6.89996;1;10;AAGGTCACTTCC;CAGTGATTTG;-!sd#MA0243.1;-3;0.0158587;7.54874;1;9;AAGGTCACTTCC;GACATTCCTCGA;+!SPI1#MA0080.2;-6;0.0180619;8.59745;1;6;AAGGTCACTTCC;ACTTCCT;-
}}
}}

Latest revision as of 14:43, 7 September 2012

Full Name: 8-MHRGTVACTTBN,CNhs13480,BestGuess:NKX25_f1_HM09(0.726382454185237),T:2071.0(45.46%),B:15467.5(35.46%),P:1e-43

Motif matrix
POACGT
1731.063604.732318.934416.271
2714.495561.241333.431461.833
3994.082.0711072.7782.071
42.071532.2471534.6112.071
5497.04372.78312.721886.388
6507.395789.051548.815225.739
72064.7872.0712.0712.071
828.9941646.44518.639376.922
953.8462.0712.0712013.012
10644.0812.0712.0711422.777
11341.715728.992459.762540.531
12501.182584.022432.839555.028

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
ABF1#MA0265.1-10.001138570.5419610.85675211AAGGTCACTTCCATATCACTTTATACGA-
Nkx3-2#MA0122.1-30.00179990.8567520.8567529AAGGTCACTTCCTCCACTTAA-
GABPA#MA0062.2-30.002709681.289810.8598739AAGGTCACTTCCGCCACTTCCGG-
En1#MA0027.1-20.006312793.00489110AAGGTCACTTCCGAACACTACTT-
ESR1#MA0112.160.007819823.72223112AAGGTCACTTCCGGGGTCACGGTGACCTGG-
Gfi#MA0038.1-10.01449576.89996110AAGGTCACTTCCCAGTGATTTG-
sd#MA0243.1-30.01585877.5487419AAGGTCACTTCCGACATTCCTCGA+
SPI1#MA0080.2-60.01806198.5974516AAGGTCACTTCCACTTCCT-
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