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MacroAPE 1083:6-HNCGKHTKWGRA: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;626.052;543.298;61.166;568.484!2;447.951;570.283;392.182;388.584!3;1.799;1793.603;1.799;1.799!4;1.799;10.794;1763.02;23.387!5;181.699;242.86...")
 
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6G5;0.305316!10534-107G3;0.0433482!10429-106D6;0.0188632!10464-106H5;0.0325816!10827-111C8;0.170674!10789-110H6;0.685474!10828-111C9;0.67923!10788-110H5;0.80846!10792-110H9;0.419921!10765-110E9;0.774223!10829-111D1;0.0540055!10830-111D2;0.139282!10831-111D3;0.652712!10832-111D4;0.645082!10833-111D5;0.165529!10764-110E8;0.344294!10770-110F5;0.397409!10399-106A3;0.933482!10400-106A4;0.162393!10405-106A9;0.17404!10834-111D6;0.125565!10835-111D7;0.430807!10836-111D8;0.340285!10837-111D9;0.496118!10699-109G6;0.735776!10802-111A1;0.311345!10796-110I4;0.242272!10010-101C1;0.565991!10810-111A9;0.0157046!10421-106C7;0.205502!10708-109H6;0.131112!12235-129G3;0.246019!12236-129G4;0.845233!12237-129G5;0.544228!10167-103B5;0.702538!10151-102I7;0.141629!10428-106D5;0.18075!10795-110I3;0.0259375!10805-111A4;0.0362316!10052-101G7;0.245539!10189-103D9;0.00293964!10589-108D4;0.00140324!10425-106D2;0.771714!10427-106D4;0.741322!10702-109G9;0.104022!10432-106D9;0.659995!10496-107C1;0.0796104!10718-109I7;0.274861!10011-101C2;0.188897!10053-101G8;0.00431017!10686-109F2;0.267705!10084-102B3;0.247989!10012-101C3;0.139727!10085-102B4;0.118457!10482-107A5;0.134972!10419-106C5;0.498094!10080-102A8;0.22798!10760-110E4;0.14979!10709-109H7;0.334849!10710-109H8;0.440959!10703-109H1;0.469192!10719-109I8;0.789737!10642-109A3;0.893903!10177-103C6;0.857757!10164-103B2;0.106758!10173-103C2;0.159054!10166-103B4;0.216225!10083-102B2;0.225576!10188-103D8;0.193416!10552-107I3;0.118468!10553-107I4;0.0559034!10013-101C4;0.934972!10536-107G5;0.0218065!10618-108G6;0.12024!10423-106C9;0.0193343!10785-110H2;0.390549!12238-129G6;0.112945!12239-129G7;0.659174!12240-129G8;0.462459!10416-106C2;0.758373!10801-110I9;0.49075!10766-110F1;0.230751!10824-111C5;0.742516!10825-111C6;0.260855!10826-111C7;0.241693!10454-106G4;0.153968!10409-106B4;0.465919!10638-108I8;0.553092!10636-108I6;0.310629!10513-107D9;0.0674062!10420-106C6;0.115618!10082-102B1;0.211191!10014-101C5;0.000129735!10070-101I7;0.000148441!10452-106G2;0.000212055!10453-106G3;0.945515!10449-106F8;0.979892!10042-101F6;0.968905!10069-101I6;0.121536!10193-103E4;0.000482411!10631-108I1;0.149288!10438-106E6;0.101961!10488-107B2;0.145689!10196-103E7;0.157938!10071-101I8;0.000634085!10071-101I8;0.00190386!10041-101F5;0.199299!10451-106G1;0.147077!10450-106F9;0.702138!10604-108F1;0.726868!10605-108F2;0.131252!10606-108F3;0.0927024!10603-108E9;0.133504!10497-107C2;0.123524!10448-106F7;0.56621!10643-109A4;0.0258699!10426-106D3;0.40604!10431-106D8;0.226194!10197-103E8;0.127961!10443-106F2;1.63898e-05!10815-111B5;0.375414!10816-111B6;0.0272761!10817-111B7;0.0355964!10015-101C6;0.0302716!10410-106B5;0.000517428!10054-101G9;0.301966!10758-110E2;0.0215771!10711-109H9;0.0108049!10040-101F4;0.00127785!10470-106I2;0.110181!10415-106C1;0.776373!10198-103E9;0.0346771!10614-108G2;0.00263124!10612-108F9;0.2919!10549-107H9;0.217726!10615-108G3;0.512074!10487-107B1;0.303133!10433-106E1;0.00380457!10688-109F4;0.0940618!10444-106F3;0.473432!10444-106F3;0.747932!10485-107A8;0.755051!10413-106B8;0.314785!10175-103C4;0.00615891!10161-103A8;0.105977!12131-128D7;0.210057!10624-108H3;0.0895038!10712-109I1;0.46907!10205-103F7;0.199669!10206-103F8;0.00239999!10207-103F9;0.000951561!10050-101G5;0.0550366!10051-101G6;0.00507747!10016-101C7;0.000354168!10046-101G1;0.000667929!10778-110G4;0.000309456!10633-108I3;0.942446!10818-111B8;0.0725842!10819-111B9;0.0264569!10820-111C1;0.0246057!10484-107A7;0.0215011!10808-111A7;0.747503!10169-103B7;0.254835!10153-102I9;0.123676!13425-144D5;0.148914!13433-144E4;0.682092!13437-144E8;0.41862!11904-125F5;0.600067!11905-125F6;0.0713964!10039-101F3;0.132588!10791-110H8;0.0983182!10017-101C8;0.449623!10045-101F9;8.31821e-05!10509-107D5;0.000910364!10839-111E2;0.0615584!10692-109F8;0.760274!10079-102A7;0.251027!10078-102A6;0.000373525!10721-110A1;0.00129934!10569-108B2;0.0808293!10570-108B3;0.620373!10571-108B4;0.460852!10647-109A8;0.518095!10752-110D5;0.0870305!10782-110G8;0.479015!10726-110A6;0.532286!10018-101C9;0.224473!10086-102B5;0.912113!10182-103D2;0.809523!10165-103B3;0.111165!10499-107C4;0.132221!10408-106B3;0.142821!10019-101D1;0.296706!10068-101I5;0.0225683!10075-102A3;0.00615635!10077-102A5;0.00481248!10727-110A7;0.782867!10775-110G1;0.135774!10412-106B7;0.21362!12231-129F8;0.327072!12232-129F9;0.739574!12233-129G1;0.439189!12234-129G2;0.849846!10414-106B9;0.229067!10170-103B8;0.21845!10183-103D3;0.161111!10150-102I6;0.0996518!10174-103C3;0.101774!10155-103A2;0.0623273!10038-101F2;0.0785939!10838-111E1;0.0556171!10759-110E3;0.792935!10514-107E1;0.145684!10465-106H6;0.846011!10691-109F7;0.285039!10843-111E6;0.340926!10844-111E7;0.880084!11747-123G1;0.200221!11748-123G2;0.396282!11749-123G3;0.380359!11750-123G4;0.80688!11751-123G5;0.968205!11840-124H4;0.463598!11752-123G6;0.46249!11753-123G7;0.272449!11754-123G8;0.711433!11755-123G9;0.21884!11756-123H1;0.194821!11833-124G6;0.312114!11760-123H5;0.450306!11836-124G9;0.405184!11758-123H3;0.348689!11835-124G8;0.822584!11762-123H7;0.509417!11838-124H2;0.78748!11757-123H2;0.354232!11759-123H4;0.659353!11761-123H6;0.619755!11842-124H6;0.399057!11837-124H1;0.830097!10568-108B1;0.4198!13230-141I8;0.980772!13231-141I9;0.516257!10696-109G3;0.318592!10493-107B7;0.786962!10494-107B8;0.0588577!10850-111F4;0.0492845!10851-111F5;0.53323!10852-111F6;0.277761!10853-111F7;0.76736!10854-111F8;0.20064!10855-111F9;0.592105!10856-111G1;0.779558!10847-111F1;0.362824!10846-111E9;0.997627!10848-111F2;0.342625!10845-111E8;0.154811!10857-111G2;0.004584!10858-111G3;0.318705!10156-103A3;0.34938!11901-125F2;0.103307!11902-125F3;0.537217!11903-125F4;0.237873!10689-109F5;0.442088!10648-109A9;0.830491!10784-110H1;0.362515!10744-110C6;0.148222!10772-110F7;0.608127!10474-106I6;0.568644!10600-108E6;0.114089!10684-109E9;0.0447133!12226-129F3;0.0205592!12227-129F4;0.0810217!10508-107D4;0.617884!10539-107G8;0.839234!10607-108F4;0.63417!10555-107I6;0.538531!10774-110F9;0.782474!10637-108I7;0.468857!10663-109C6;0.956545!10728-110A8;0.660953!10729-110A9;0.122633!10430-106D7;0.663164!10730-110B1;0.056913!10813-111B3;0.109959!10812-111B2;0.943513!10037-101F1;0.840464!10172-103C1;0.0980417!10163-103B1;0.126128!10076-102A4;0.132089!10073-102A1;0.109483!10036-101E9;0.200682!10195-103E6;0.11267!10277-104E7;0.120719!10434-106E2;0.310707!10550-107I1;0.136828!10545-107H5;0.372356!10544-107H4;0.133544!10704-109H2;0.0484108!10510-107D6;0.472521!10558-107I9;0.247731!10020-101D2;0.482241!10732-110B3;0.00838909!10049-101G4;0.222154!10698-109G5;0.790902!10437-106E5;0.0571171!10417-106C3;0.426351!10035-101E8;0.24364!10171-103B9;0.113501!10157-103A4;0.122956!10034-101E7;0.115311!10072-101I9;0.091798!10199-103F1;0.237435!10200-103F2;0.040257!10697-109G4;0.00015758!10723-110A3;0.840342!10179-103C8;0.27752!10160-103A7;0.176159!10180-103C9;0.210661!10162-103A9;0.173246!10021-101D3;0.0379594!10840-111E3;0.00652286!10706-109H4;0.327247!10033-101E6;0.0785898!10032-101E5;0.0812848!10490-107B4;0.0950572!10439-106E7;0.158419!10022-101D4;0.308622!10176-103C5;0.000429392!10469-106I1;0.213783!10067-101I4;0.43134!10411-106B6;2.25544e-05!10471-106I3;0.66267!10030-101E3;0.0756593!10475-106I7;0.0161208!10787-110H4;0.315705!10477-106I9;0.500351!10695-109G2;0.709057!11771-123I7;0.332528!11772-123I8;0.225081!11773-123I9;0.590746!10093-102C3;0.574718!10442-106F1;0.0334493!10442-106F1;0.0894947!10201-103F3;0.199659!10639-108I9;0.000439696!11843-124H7;0.576643!11841-124H5;0.0888143!10693-109F9;0.0585377!10436-106E4;0.0686429!10483-107A6;0.223242!10282-104F3;0.0464285!10023-101D5;0.00788268!10066-101I3;0.00500419!10065-101I2;0.00184239!10800-110I8;0.00141185!10610-108F7;0.970717!10841-111E4;0.697297!10541-107H1;0.46863!10842-111E5;0.144554!10562-108A4;0.714819!10024-101D6;0.577467!10064-101I1;0.000794989!10609-108F6;7.15586e-06!10048-101G3;0.324646!10781-110G7;0.00883512!10181-103D1;0.365658!10159-103A6;0.0809315!10056-101H2;0.136255!10737-110B8;0.0529338!10025-101D7;0.820332!10044-101F8;0.515632!10424-106D1;0.110603!10463-106H4;0.126534!10616-108G4;0.287924!10486-107A9;0.0318303!10062-101H8;0.00831673!10202-103F4;0.00958934!10158-103A5;0.000627088!10441-106E9;0.201915!10031-101E4;0.112772!10063-101H9;0.091649!10063-101H9;0.254313!11763-123H8;0.00821824!11765-123I1;0.316326!11768-123I4;0.17843!10807-111A6;0.140685!10790-110H7;0.22103!10798-110I6;0.190516!10786-110H3;0.179249!10591-108D6;0.833336!10593-108D8;0.466019!10590-108D5;0.455331!10026-101D8;0.140048!10096-102C6;0.0017!10168-103B6;0.256016!10154-103A1;0.17798!10209-103G2;0.175339!10061-101H7;5.01802e-05!10027-101D9;0.00197014!10043-101F7;0.489804!10783-110G9;0.681111!10028-101E1;0.163686!10060-101H6;0.0266129!10203-103F5;0.00174974!10059-101H5;0.000112545!10047-101G2;6.28041e-05!10029-101E2;0.00984294!10058-101H4;0.000489668!10418-106C4;0.000773977!10492-107B6;0.642574!10694-109G1;0.110162!10797-110I5;0.719142!10057-101H3;0.0385863!10100-102D1;0.000708894!10055-101H1;0.0101333!10204-103F6;0.0036437!10191-103E2;0.00430619!10563-108A5;0.00125135
|name=6-HNCGKHTKWGRA,CNhs12593,BestGuess:ELK4_f1_HM09(0.551849717077099),T:1799.0(59.59%),B:22413.5(49.59%),P:1e-27
|name=6-HNCGKHTKWGRA,CNhs12593,BestGuess:ELK4_f1_HM09(0.551849717077099),T:1799.0(59.59%),B:22413.5(49.59%),P:1e-27
|tomtom_result=ABF1#MA0265.1;-1;0.00380723;1.81224;1;11;ACCGGTTTAGAA;TCGTATAAAGTGATAA;+!RGT1#MA0367.1;-1;0.00652413;3.10549;1;11;ACCGGTTTAGAA;CCGGAAAAACT;-!ELK1#MA0028.1;2;0.00796242;3.79011;1;8;ACCGGTTTAGAA;CTTCCGGCTC;-!Tcfcp2l1#MA0145.1;-1;0.0113094;5.38327;1;11;ACCGGTTTAGAA;CTGGTTTGAACTGG;-!Tal1::Gata1#MA0140.1;-1;0.0114716;5.46049;1;11;ACCGGTTTAGAA;CTGGTGGGGACAGATAAG;+!ASG1#MA0275.1;-1;0.0116213;5.53174;1;6;ACCGGTTTAGAA;CCGGAA;+!id1#MA0120.1;-2;0.0117445;5.59037;1;10;ACCGGTTTAGAA;CGAAAAGGAAAA;-!MCM1#MA0331.1;-1;0.0125561;5.9767;1;11;ACCGGTTTAGAA;CCCAATTAGGAA;+!UPC2#MA0411.1;-1;0.0174053;8.28494;1;7;ACCGGTTTAGAA;TCGTATA;-!AG#MA0005.1;0;0.0183796;8.74868;1;11;ACCGGTTTAGAA;ACCAAATTTGG;-!IXR1#MA0323.1;7;0.0195718;9.31619;1;8;ACCGGTTTAGAA;CCCCGCTTCCGGCTT;-!GSM1#MA0308.1;10;0.0196787;9.36707;1;11;ACCGGTTTAGAA;ATTAAAAAACTCCGGAGTATA;+
}}
}}

Latest revision as of 14:45, 7 September 2012

Full Name: 6-HNCGKHTKWGRA,CNhs12593,BestGuess:ELK4_f1_HM09(0.551849717077099),T:1799.0(59.59%),B:22413.5(49.59%),P:1e-27

Motif matrix
POACGT
1626.052543.29861.166568.484
2447.951570.283392.182388.584
31.7991793.6031.7991.799
41.79910.7941763.0223.387
5181.699242.865699.811674.625
6629.65501.92112.593654.836
7663.8311.7991.7991131.571
8217.679384.986480.333716.002
9976.85710.7941.799809.55
10359.8352.604687.218399.378
11870.71635.98626.052266.252
121147.762647.641.7991.799

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
ABF1#MA0265.1-10.003807231.81224111ACCGGTTTAGAATCGTATAAAGTGATAA+
RGT1#MA0367.1-10.006524133.10549111ACCGGTTTAGAACCGGAAAAACT-
ELK1#MA0028.120.007962423.7901118ACCGGTTTAGAACTTCCGGCTC-
Tcfcp2l1#MA0145.1-10.01130945.38327111ACCGGTTTAGAACTGGTTTGAACTGG-
Tal1::Gata1#MA0140.1-10.01147165.46049111ACCGGTTTAGAACTGGTGGGGACAGATAAG+
ASG1#MA0275.1-10.01162135.5317416ACCGGTTTAGAACCGGAA+
id1#MA0120.1-20.01174455.59037110ACCGGTTTAGAACGAAAAGGAAAA-
MCM1#MA0331.1-10.01255615.9767111ACCGGTTTAGAACCCAATTAGGAA+
UPC2#MA0411.1-10.01740538.2849417ACCGGTTTAGAATCGTATA-
AG#MA0005.100.01837968.74868111ACCGGTTTAGAAACCAAATTTGG-
IXR1#MA0323.170.01957189.3161918ACCGGTTTAGAACCCCGCTTCCGGCTT-
GSM1#MA0308.1100.01967879.36707111ACCGGTTTAGAAATTAAAAAACTCCGGAGTATA+
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