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MacroAPE 1083:7-AVAVAGSAAAST: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;542.794;271.397;0.959;143.85!2;332.773;219.611;289.618;117.957!3;456.484;124.67;158.235;219.611!4;334.691;333.732;289.618;0.959!5;750.897;0....")
 
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0.0438002!10809-111A8;0.0299981!10597-108E3;1.59824e-05!10717-109I6;2.54603e-06!10455-106G5;0.0619964!10534-107G3;0.933368!10429-106D6;0.0195669!10464-106H5;0.578006!10827-111C8;0.445745!10789-110H6;0.534689!10828-111C9;0.90544!10788-110H5;0.209011!10792-110H9;0.123151!10765-110E9;0.969557!10829-111D1;0.9631!10830-111D2;0.273162!10831-111D3;0.639565!10832-111D4;0.843999!10833-111D5;0.651044!10764-110E8;0.357018!10770-110F5;0.33546!10399-106A3;0.771098!10400-106A4;0.150994!10405-106A9;0.104994!10834-111D6;0.0544235!10835-111D7;0.853258!10836-111D8;0.0724215!10837-111D9;4.1083e-07!10699-109G6;0.173939!10802-111A1;0.621786!10796-110I4;0.0343046!10010-101C1;0.405687!10810-111A9;0.00524075!10421-106C7;7.98409e-05!10708-109H6;0.387679!12235-129G3;0.361806!12236-129G4;0.834307!12237-129G5;0.618853!10167-103B5;0.555151!10151-102I7;0.631716!10428-106D5;0.926268!10795-110I3;0.417647!10805-111A4;0.0293575!10052-101G7;0.000140697!10189-103D9;0.00459051!10589-108D4;0.000271471!10425-106D2;0.000289507!10427-106D4;0.468119!10702-109G9;0.82563!10432-106D9;0.211075!10496-107C1;0.164253!10718-109I7;0.709312!10011-101C2;0.136022!10053-101G8;0.000751051!10686-109F2;0.0299619!10084-102B3;0.779361!10012-101C3;0.528254!10085-102B4;0.887584!10482-107A5;0.280287!10419-106C5;0.0235497!10080-102A8;0.00263529!10760-110E4;0.0182677!10709-109H7;0.0251591!10710-109H8;0.0554152!10703-109H1;0.00443111!10719-109I8;8.41215e-06!10642-109A3;0.0023076!10177-103C6;1.04406e-05!10164-103B2;0.920165!10173-103C2;0.857597!10166-103B4;0.335183!10083-102B2;0.554039!10188-103D8;0.146745!10552-107I3;0.904763!10553-107I4;0.00214396!10013-101C4;0.0471457!10536-107G5;0.0339838!10618-108G6;0.784828!10423-106C9;0.0594274!10785-110H2;0.0858225!12238-129G6;0.0363991!12239-129G7;0.00233416!12240-129G8;0.0900159!10416-106C2;0.000151613!10801-110I9;0.463436!10766-110F1;0.866144!10824-111C5;0.273758!10825-111C6;0.00165647!10826-111C7;0.00292095!10454-106G4;0.00436445!10409-106B4;0.00335671!10638-108I8;0.461561!10636-108I6;0.0168379!10513-107D9;0.0345287!10420-106C6;0.213017!10082-102B1;9.58422e-05!10014-101C5;0.341195!10070-101I7;0.156646!10452-106G2;0.139245!10453-106G3;0.261041!10449-106F8;0.200132!10042-101F6;0.179836!10069-101I6;0.851701!10193-103E4;0.442978!10631-108I1;0.639722!10438-106E6;0.303102!10488-107B2;0.0476951!10196-103E7;0.00070897!10071-101I8;0.722789!10071-101I8;0.505246!10041-101F5;0.181725!10451-106G1;0.0073436!10450-106F9;1.37162e-05!10604-108F1;1.90257e-06!10605-108F2;0.122483!10606-108F3;0.222858!10603-108E9;0.0576107!10497-107C2;0.0188193!10448-106F7;0.349247!10643-109A4;0.0121693!10426-106D3;0.0037554!10431-106D8;0.125639!10197-103E8;0.177384!10443-106F2;0.302447!10815-111B5;0.30319!10816-111B6;0.118422!10817-111B7;0.0717997!10015-101C6;0.0943906!10410-106B5;0.106886!10054-101G9;0.168988!10758-110E2;0.956105!10711-109H9;0.895885!10040-101F4;0.145312!10470-106I2;0.573965!10415-106C1;0.0918541!10198-103E9;0.222102!10614-108G2;0.168165!10612-108F9;0.499508!10549-107H9;0.00373265!10615-108G3;0.000602897!10487-107B1;0.00321457!10433-106E1;0.0111788!10688-109F4;0.334351!10444-106F3;0.290928!10444-106F3;0.878438!10485-107A8;0.855669!10413-106B8;0.7671!10175-103C4;0.691929!10161-103A8;0.955159!12131-128D7;0.579484!10624-108H3;0.450546!10712-109I1;0.935909!10205-103F7;0.250655!10206-103F8;0.268869!10207-103F9;0.477461!10050-101G5;0.0245441!10051-101G6;0.864155!10016-101C7;0.767988!10046-101G1;0.540667!10778-110G4;0.624842!10633-108I3;0.250788!10818-111B8;0.205225!10819-111B9;0.0352408!10820-111C1;0.0443782!10484-107A7;0.0332863!10808-111A7;4.75943e-05!10169-103B7;0.567215!10153-102I9;0.965012!13425-144D5;0.77654!13433-144E4;0.000596581!13437-144E8;0.00176076!11904-125F5;0.0137593!11905-125F6;0.00968778!10039-101F3;0.61105!10791-110H8;0.560275!10017-101C8;0.0167497!10045-101F9;0.28351!10509-107D5;0.867637!10839-111E2;0.539384!10692-109F8;7.46024e-07!10079-102A7;0.0531977!10078-102A6;0.330187!10721-110A1;0.330261!10569-108B2;0.00331915!10570-108B3;0.506778!10571-108B4;0.53869!10647-109A8;0.381548!10752-110D5;0.474547!10782-110G8;0.150654!10726-110A6;0.590368!10018-101C9;0.0789072!10086-102B5;0.814252!10182-103D2;0.871101!10165-103B3;0.948795!10499-107C4;0.763024!10408-106B3;0.0664925!10019-101D1;0.559279!10068-101I5;0.00402829!10075-102A3;0.0741431!10077-102A5;0.0190678!10727-110A7;5.98227e-05!10775-110G1;0.801642!10412-106B7;0.829857!12231-129F8;0.681991!12232-129F9;0.558395!12233-129G1;0.0625101!12234-129G2;0.118701!10414-106B9;0.291378!10170-103B8;0.00313679!10183-103D3;0.619606!10150-102I6;0.733307!10174-103C3;0.903473!10155-103A2;0.751059!10038-101F2;0.606435!10838-111E1;0.797453!10759-110E3;0.000551457!10514-107E1;0.0865587!10465-106H6;0.0532715!10691-109F7;0.0310473!10843-111E6;0.992079!10844-111E7;0.00136545!11747-123G1;0.00199031!11748-123G2;0.0896937!11749-123G3;0.0741215!11750-123G4;0.150376!11751-123G5;0.132238!11840-124H4;0.166259!11752-123G6;0.15635!11753-123G7;0.517202!11754-123G8;0.171434!11755-123G9;0.0757709!11756-123H1;0.0379374!11833-124G6;0.0746892!11760-123H5;0.568009!11836-124G9;0.178278!11758-123H3;0.0450329!11835-124G8;0.251878!11762-123H7;0.444269!11838-124H2;0.0904514!11757-123H2;0.0481941!11759-123H4;0.0580493!11761-123H6;0.154427!11842-124H6;0.0672976!11837-124H1;0.271537!10568-108B1;0.381384!13230-141I8;0.953259!13231-141I9;0.224971!10696-109G3;0.355123!10493-107B7;0.640218!10494-107B8;0.173443!10850-111F4;0.810961!10851-111F5;0.0517639!10852-111F6;0.794995!10853-111F7;0.603873!10854-111F8;0.665108!10855-111F9;0.794788!10856-111G1;0.44148!10847-111F1;0.57575!10846-111E9;0.627373!10848-111F2;0.971102!10845-111E8;0.77158!10857-111G2;0.112625!10858-111G3;0.0321321!10156-103A3;0.735506!11901-125F2;0.988458!11902-125F3;0.0175992!11903-125F4;0.0756991!10689-109F5;0.245538!10648-109A9;0.465758!10784-110H1;0.590979!10744-110C6;0.046891!10772-110F7;0.337541!10474-106I6;0.201242!10600-108E6;0.40553!10684-109E9;0.137164!12226-129F3;0.134366!12227-129F4;0.000989273!10508-107D4;0.679042!10539-107G8;0.00147656!10607-108F4;0.00535449!10555-107I6;0.0192854!10774-110F9;0.000427881!10637-108I7;0.0606473!10663-109C6;0.017172!10728-110A8;0.0656956!10729-110A9;0.0134495!10430-106D7;0.130908!10730-110B1;0.00672906!10813-111B3;0.000621297!10812-111B2;0.0432268!10037-101F1;0.399185!10172-103C1;0.612345!10163-103B1;0.703133!10076-102A4;0.963617!10073-102A1;0.479186!10036-101E9;0.114859!10195-103E6;0.408957!10277-104E7;0.631371!10434-106E2;0.76676!10550-107I1;0.00183386!10545-107H5;0.000821762!10544-107H4;0.0903611!10704-109H2;0.205661!10510-107D6;0.611047!10558-107I9;0.0236135!10020-101D2;0.0410173!10732-110B3;0.169481!10049-101G4;0.646101!10698-109G5;0.209218!10437-106E5;0.0620093!10417-106C3;0.312119!10035-101E8;0.20751!10171-103B9;0.492623!10157-103A4;0.532176!10034-101E7;0.932839!10072-101I9;0.572045!10199-103F1;0.19829!10200-103F2;0.215447!10697-109G4;0.17663!10723-110A3;0.143425!10179-103C8;0.0746979!10160-103A7;0.276274!10180-103C9;0.633901!10162-103A9;0.0202403!10021-101D3;0.298624!10840-111E3;0.000241442!10706-109H4;0.956935!10033-101E6;0.70141!10032-101E5;0.85935!10490-107B4;0.428246!10439-106E7;0.0202484!10022-101D4;0.0060409!10176-103C5;0.0725422!10469-106I1;0.767658!10067-101I4;0.021502!10411-106B6;0.190581!10471-106I3;0.257038!10030-101E3;0.0610687!10475-106I7;0.863823!10787-110H4;4.8688e-05!10477-106I9;0.00335678!10695-109G2;0.00366882!11771-123I7;0.168476!11772-123I8;0.198124!11773-123I9;0.323593!10093-102C3;0.241159!10442-106F1;0.101166!10442-106F1;0.761451!10201-103F3;0.98799!10639-108I9;0.89322!11843-124H7;0.309617!11841-124H5;0.0666012!10693-109F9;0.097451!10436-106E4;0.000130245!10483-107A6;0.197281!10282-104F3;0.0202219!10023-101D5;0.711427!10066-101I3;0.513807!10065-101I2;0.345415!10800-110I8;0.135975!10610-108F7;8.60091e-05!10841-111E4;0.00193563!10541-107H1;0.00100179!10842-111E5;0.0231388!10562-108A4;1.95982e-05!10024-101D6;0.0278898!10064-101I1;0.266506!10609-108F6;0.352678!10048-101G3;0.00070908!10781-110G7;0.0436636!10181-103D1;0.00557909!10159-103A6;0.506302!10056-101H2;0.194775!10737-110B8;0.844831!10025-101D7;0.298217!10044-101F8;0.00369043!10424-106D1;0.0122094!10463-106H4;0.666713!10616-108G4;0.0419993!10486-107A9;0.0692536!10062-101H8;0.156891!10202-103F4;0.800841!10158-103A5;0.153103!10441-106E9;0.302552!10031-101E4;8.848e-05!10063-101H9;0.441114!10063-101H9;0.157313!11763-123H8;0.0838033!11765-123I1;0.136227!11768-123I4;0.518131!10807-111A6;0.276445!10790-110H7;0.0175504!10798-110I6;0.000719363!10786-110H3;0.000118069!10591-108D6;0.0281165!10593-108D8;0.00254378!10590-108D5;0.0236507!10026-101D8;0.00166198!10096-102C6;0.200548!10168-103B6;7.62345e-07!10154-103A1;0.932647!10209-103G2;0.763266!10061-101H7;0.173581!10027-101D9;0.272142!10043-101F7;0.0129952!10783-110G9;0.00057204!10028-101E1;0.199064!10060-101H6;0.136867!10203-103F5;0.305598!10059-101H5;0.260432!10047-101G2;0.48734!10029-101E2;0.0044967!10058-101H4;0.00169163!10418-106C4;0.143088!10492-107B6;0.0976884!10694-109G1;0.723786!10797-110I5;0.982517!10057-101H3;0.0358081!10100-102D1;0.093335!10055-101H1;0.108065!10204-103F6;0.708182!10191-103E2;0.00328918!10563-108A5;0.000649235
|name=7-AVAVAGSAAAST,CNhs13539,BestGuess:NFATC1..3.p2.SwissRegulon.nucfreq(0.713118452372982),T:959.0(36.58%),B:11553.0(26.15%),P:1e-31
|name=7-AVAVAGSAAAST,CNhs13539,BestGuess:NFATC1..3.p2.SwissRegulon.nucfreq(0.713118452372982),T:959.0(36.58%),B:11553.0(26.15%),P:1e-31
|tomtom_result=AZF1#MA0277.1;-1;0.00099501;0.473625;0.451836;9;AAAAAGGAAACT;AAAAAGAAA;+!Klf4#MA0039.1;-1;0.00107114;0.509863;0.451836;10;AAAAAGGAAACT;TAAAGGAAGG;+!SPIB#MA0081.1;-2;0.00142723;0.679361;0.451836;7;AAAAAGGAAACT;AGAGGAA;+!GSM1#MA0308.1;-1;0.00221978;1.05662;0.456;11;AAAAAGGAAACT;ATTAAAAAACTCCGGAGTATA;+!id1#MA0120.1;2;0.00240063;1.1427;0.456;10;AAAAAGGAAACT;CGAAAAGGAAAA;-!SFP1#MA0378.1;0;0.00461696;2.19767;0.632604;12;AAAAAGGAAACT;ATTGAAAAAAATTTTCTACGG;+!ETS1#MA0098.1;-4;0.00468888;2.23191;0.632604;6;AAAAAGGAAACT;CGGAAA;-!squamosa#MA0082.1;3;0.0053286;2.53641;0.632604;11;AAAAAGGAAACT;CCAAAAATGGAAAT;+!ELK1#MA0028.1;0;0.00662606;3.154;0.673642;10;AAAAAGGAAACT;GAGCCGGAAG;+!br_Z4#MA0013.1;1;0.00763091;3.63231;0.673642;10;AAAAAGGAAACT;TAGTAAACAAA;+!RME1#MA0370.1;1;0.00847018;4.03181;0.673642;9;AAAAAGGAAACT;TCCAAAGGAA;+!TEAD1#MA0090.1;-1;0.00851142;4.05143;0.673642;11;AAAAAGGAAACT;CGGAGGAATGTG;-!GCR2#MA0305.1;-4;0.0111402;5.30273;0.702752;7;AAAAAGGAAACT;AGGAAGC;-!FOXA1#MA0148.1;-1;0.011531;5.48878;0.702752;11;AAAAAGGAAACT;CAAAGTAAACA;-!HCM1#MA0317.1;-1;0.0127311;6.06002;0.702752;8;AAAAAGGAAACT;ATAAACAA;+!MAC1#MA0326.1;-2;0.0127311;6.06002;0.702752;8;AAAAAGGAAACT;TGAGCAAA;-!Trl#MA0205.1;1;0.0135486;6.44911;0.702752;9;AAAAAGGAAACT;GAGAGAGCAA;-!ELF5#MA0136.1;-3;0.0140588;6.69197;0.702752;9;AAAAAGGAAACT;AAGGAAGTA;-!GCR1#MA0304.1;-4;0.0194693;9.26737;0.902591;8;AAAAAGGAAACT;TGGAAGCC;+!PBF#MA0064.1;-7;0.0199573;9.49967;0.902591;5;AAAAAGGAAACT;AAAGC;+
}}
}}

Latest revision as of 14:46, 7 September 2012

Full Name: 7-AVAVAGSAAAST,CNhs13539,BestGuess:NFATC1..3.p2.SwissRegulon.nucfreq(0.713118452372982),T:959.0(36.58%),B:11553.0(26.15%),P:1e-31

Motif matrix
POACGT
1542.794271.3970.959143.85
2332.773219.611289.618117.957
3456.484124.67158.235219.611
4334.691333.732289.6180.959
5750.8970.9590.959206.185
6350.9940.959591.70315.344
7109.326381.682457.44310.549
8949.417.6720.9590.959
9864.0590.95945.07348.909
10560.0560.959316.4781.515
11134.26432.509391.2720.959
120.959352.9120.959604.17

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
AZF1#MA0277.1-10.000995010.4736250.4518369AAAAAGGAAACTAAAAAGAAA+
Klf4#MA0039.1-10.001071140.5098630.45183610AAAAAGGAAACTTAAAGGAAGG+
SPIB#MA0081.1-20.001427230.6793610.4518367AAAAAGGAAACTAGAGGAA+
GSM1#MA0308.1-10.002219781.056620.45611AAAAAGGAAACTATTAAAAAACTCCGGAGTATA+
id1#MA0120.120.002400631.14270.45610AAAAAGGAAACTCGAAAAGGAAAA-
SFP1#MA0378.100.004616962.197670.63260412AAAAAGGAAACTATTGAAAAAAATTTTCTACGG+
ETS1#MA0098.1-40.004688882.231910.6326046AAAAAGGAAACTCGGAAA-
squamosa#MA0082.130.00532862.536410.63260411AAAAAGGAAACTCCAAAAATGGAAAT+
ELK1#MA0028.100.006626063.1540.67364210AAAAAGGAAACTGAGCCGGAAG+
br_Z4#MA0013.110.007630913.632310.67364210AAAAAGGAAACTTAGTAAACAAA+
RME1#MA0370.110.008470184.031810.6736429AAAAAGGAAACTTCCAAAGGAA+
TEAD1#MA0090.1-10.008511424.051430.67364211AAAAAGGAAACTCGGAGGAATGTG-
GCR2#MA0305.1-40.01114025.302730.7027527AAAAAGGAAACTAGGAAGC-
FOXA1#MA0148.1-10.0115315.488780.70275211AAAAAGGAAACTCAAAGTAAACA-
HCM1#MA0317.1-10.01273116.060020.7027528AAAAAGGAAACTATAAACAA+
MAC1#MA0326.1-20.01273116.060020.7027528AAAAAGGAAACTTGAGCAAA-
Trl#MA0205.110.01354866.449110.7027529AAAAAGGAAACTGAGAGAGCAA-
ELF5#MA0136.1-30.01405886.691970.7027529AAAAAGGAAACTAAGGAAGTA-
GCR1#MA0304.1-40.01946939.267370.9025918AAAAAGGAAACTTGGAAGCC+
PBF#MA0064.1-70.01995739.499670.9025915AAAAAGGAAACTAAAGC+
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