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MacroAPE 1083:9-ACTTMCTHC: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;1685.164;2.818;859.49;270.528!2;2.818;1620.35;321.252;873.58!3;442.426;357.886;758.042;1259.646!4;2.818;735.498;594.598;1485.086!5;1287.826;...")
 
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!11833-124G6;0.385677!11760-123H5;0.865922!11836-124G9;0.71007!11758-123H3;0.430566!11835-124G8;0.467683!11762-123H7;0.352771!11838-124H2;0.261209!11757-123H2;0.259051!11759-123H4;0.766477!11761-123H6;0.676859!11842-124H6;0.921808!11837-124H1;0.582762!10568-108B1;0.581912!13230-141I8;0.00767704!13231-141I9;0.236545!10696-109G3;0.183125!10493-107B7;0.897987!10494-107B8;0.00530605!10850-111F4;0.0193365!10851-111F5;0.00491731!10852-111F6;0.138976!10853-111F7;0.0308153!10854-111F8;0.0412404!10855-111F9;0.0567295!10856-111G1;0.0420205!10847-111F1;0.0148394!10846-111E9;0.674843!10848-111F2;0.173668!10845-111E8;0.131709!10857-111G2;0.0112662!10858-111G3;0.00122147!10156-103A3;0.149803!11901-125F2;0.513318!11902-125F3;0.278293!11903-125F4;0.157153!10689-109F5;0.327679!10648-109A9;5.33751e-05!10784-110H1;0.0301235!10744-110C6;0.814238!10772-110F7;0.211508!10474-106I6;0.719067!10600-108E6;0.605247!10684-109E9;0.214341!12226-129F3;0.55017!12227-129F4;0.761613!10508-107D4;0.19573!10539-107G8;0.117851!10607-108F4;0.307172!10555-107I6;0.113141!10774-110F9;0.307124!10637-108I7;0.0612919!10663-109C6;0.269141!10728-110A8;0.00661259!10729-110A9;0.0663292!10430-106D7;0.278568!10730-110B1;0.718196!10813-111B3;0.10818!10812-111B2;0.0553598!10037-101F1;0.0188097!10172-103C1;0.700298!10163-103B1;0.908491!10076-102A4;0.449509!10073-102A1;0.99242!10036-101E9;0.9836!10195-103E6;0.706718!10277-104E7;0.918965!10434-106E2;0.991666!10550-107I1;0.646737!10545-107H5;0.0163221!10544-107H4;0.56732!10704-109H2;0.136618!10510-107D6;0.996344!10558-107I9;0.809588!10020-101D2;0.0551108!10732-110B3;0.222892!10049-101G4;0.00140286!10698-109G5;0.20514!10437-106E5;0.0242963!10417-106C3;0.169675!10035-101E8;0.269126!10171-103B9;0.762078!10157-103A4;0.648948!10034-101E7;0.549334!10072-101I9;0.700821!10199-103F1;0.911643!10200-103F2;0.522616!10697-109G4;0.824623!10723-110A3;0.160312!10179-103C8;0.772509!10160-103A7;0.401587!10180-103C9;0.901141!10162-103A9;0.790072!10021-101D3;0.717137!10840-111E3;0.551421!10706-109H4;0.748592!10033-101E6;0.0805025!10032-101E5;0.719804!10490-107B4;0.81407!10439-106E7;0.00663166!10022-101D4;0.48696!10176-103C5;0.22148!10469-106I1;0.964459!10067-101I4;0.214543!10411-106B6;0.775775!10471-106I3;0.513707!10030-101E3;0.0162353!10475-106I7;0.408489!10787-110H4;0.0497629!10477-106I9;0.050738!10695-109G2;0.155325!11771-123I7;0.679594!11772-123I8;0.182315!11773-123I9;0.0519977!10093-102C3;0.427594!10442-106F1;0.311701!10442-106F1;0.394677!10201-103F3;0.608861!10639-108I9;0.270766!11843-124H7;0.0895993!11841-124H5;0.0189151!10693-109F9;0.141164!10436-106E4;0.00182447!10483-107A6;0.167167!10282-104F3;0.118115!10023-101D5;0.155957!10066-101I3;0.346406!10065-101I2;0.415255!10800-110I8;0.861467!10610-108F7;0.0702734!10841-111E4;0.0453544!10541-107H1;0.0327907!10842-111E5;0.276144!10562-108A4;0.0870282!10024-101D6;0.7767!10064-101I1;0.0304123!10609-108F6;0.580156!10048-101G3;0.222081!10781-110G7;0.326236!10181-103D1;0.314051!10159-103A6;0.763576!10056-101H2;0.210965!10737-110B8;0.706291!10025-101D7;0.459808!10044-101F8;0.0069085!10424-106D1;0.0200454!10463-106H4;0.38588!10616-108G4;0.0125639!10486-107A9;0.601707!10062-101H8;0.294232!10202-103F4;0.345236!10158-103A5;0.289757!10441-106E9;0.271678!10031-101E4;0.0924374!10063-101H9;0.745805!10063-101H9;0.990019!11763-123H8;0.278169!11765-123I1;0.184545!11768-123I4;0.097507!10807-111A6;0.130054!10790-110H7;0.0752156!10798-110I6;0.0690449!10786-110H3;0.00132226!10591-108D6;0.0642681!10593-108D8;0.0709589!10590-108D5;0.205267!10026-101D8;0.0561315!10096-102C6;0.78867!10168-103B6;0.455031!10154-103A1;0.891415!10209-103G2;0.429616!10061-101H7;0.871414!10027-101D9;0.71684!10043-101F7;0.0378601!10783-110G9;0.0142587!10028-101E1;0.310427!10060-101H6;0.813573!10203-103F5;0.710706!10059-101H5;0.866352!10047-101G2;0.319891!10029-101E2;0.0388943!10058-101H4;0.32752!10418-106C4;0.769271!10492-107B6;0.750633!10694-109G1;0.00113903!10797-110I5;0.662663!10057-101H3;0.123526!10100-102D1;0.327235!10055-101H1;0.112657!10204-103F6;0.849474!10191-103E2;0.227284!10563-108A5;0.0312925
|name=9-ACTTMCTHC,CNhs13493,BestGuess:EP300.p2.SwissRegulon.nucfreq(0.665506750413533),T:2818.0(39.99%),B:12528.2(29.94%),P:1e-71
|name=9-ACTTMCTHC,CNhs13493,BestGuess:EP300.p2.SwissRegulon.nucfreq(0.665506750413533),T:2818.0(39.99%),B:12528.2(29.94%),P:1e-71
|tomtom_result=SPI1#MA0080.2;0;0.0010221;0.486519;0.54578;7;ACTTACTTC;ACTTCCT;-!ELF5#MA0136.1;1;0.0011466;0.54578;0.54578;8;ACTTACTTC;TACTTCCTT;+!ARO80#MA0273.1;0;0.00427038;2.0327;1;9;ACTTACTTC;ACATACTTGCCGAGAATTATC;-!Nkx3-2#MA0122.1;-1;0.00907251;4.31852;1;8;ACTTACTTC;TCCACTTAA;-!Foxa2#MA0047.1;4;0.0104272;4.96336;1;8;ACTTACTTC;CAATATTTACTT;+!FOXC1#MA0032.1;1;0.0118621;5.64637;1;7;ACTTACTTC;TACTTACC;-!GABPA#MA0062.2;-1;0.0128494;6.11632;1;8;ACTTACTTC;GCCACTTCCGG;-!z#MA0255.1;0;0.0132103;6.28811;1;9;ACTTACTTC;AATCACTCAA;-!YAP1#MA0415.1;0;0.0208922;9.9447;1;9;ACTTACTTC;ATTTGCTTACGTAAGCTCGT;+
}}
}}

Latest revision as of 14:48, 7 September 2012

Full Name: 9-ACTTMCTHC,CNhs13493,BestGuess:EP300.p2.SwissRegulon.nucfreq(0.665506750413533),T:2818.0(39.99%),B:12528.2(29.94%),P:1e-71

Motif matrix
POACGT
11685.1642.818859.49270.528
22.8181620.35321.252873.58
3442.426357.886758.0421259.646
42.818735.498594.5981485.086
51287.826890.488639.6862.818
62.8182744.7322.81867.632
747.9062.8182.8182764.458
8859.49794.67642.271124.382
91028.571704.8981.7222.818

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation

SPI1#MA0080.200.00102210.4865190.545787ACTTACTTCACTTCCT-
ELF5#MA0136.110.00114660.545780.545788ACTTACTTCTACTTCCTT+
ARO80#MA0273.100.004270382.032719ACTTACTTCACATACTTGCCGAGAATTATC-
Nkx3-2#MA0122.1-10.009072514.3185218ACTTACTTCTCCACTTAA-
Foxa2#MA0047.140.01042724.9633618ACTTACTTCCAATATTTACTT+
FOXC1#MA0032.110.01186215.6463717ACTTACTTCTACTTACC-
GABPA#MA0062.2-10.01284946.1163218ACTTACTTCGCCACTTCCGG-
z#MA0255.100.01321036.2881119ACTTACTTCAATCACTCAA-
YAP1#MA0415.100.02089229.944719ACTTACTTCATTTGCTTACGTAAGCTCGT+