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MacroAPE 1083:Motif CCCTNA: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!01;0;44;0;0!02;0;44;0;0!03;0;44;0;0!04;0;0;0;44!05;0;0;44;0!06;44;0;0;0 |macroape_1083_sample_pvalues=11376-118A8;0.525375!11327-117E4;0.2585...")
 
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1C9;0.553003!10788-110H5;0.762819!10792-110H9;0.436867!10765-110E9;0.654004!10829-111D1;0.692503!10830-111D2;0.282548!10831-111D3;0.64699!10832-111D4;0.500664!10833-111D5;0.404327!10764-110E8;0.42008!10770-110F5;0.345603!10399-106A3;0.413086!10400-106A4;0.46978!10405-106A9;0.53218!10834-111D6;0.464792!10835-111D7;0.783177!10836-111D8;0.575649!10837-111D9;0.256249!10699-109G6;0.773281!10802-111A1;0.269192!10796-110I4;0.259763!10010-101C1;0.203228!10810-111A9;0.331284!10421-106C7;0.161238!10708-109H6;0.785182!12235-129G3;0.289353!12236-129G4;0.730158!12237-129G5;0.990846!10167-103B5;0.625542!10151-102I7;0.50391!10428-106D5;0.447203!10795-110I3;0.0181623!10805-111A4;0.698192!10052-101G7;0.0346337!10189-103D9;0.36472!10589-108D4;0.264643!10425-106D2;0.737373!10427-106D4;0.181306!10702-109G9;0.494803!10432-106D9;0.501898!10496-107C1;0.0720623!10718-109I7;0.696001!10011-101C2;0.658542!10053-101G8;0.321716!10686-109F2;0.665128!10084-102B3;0.491894!10012-101C3;0.39332!10085-102B4;0.340302!10482-107A5;0.846766!10419-106C5;0.149023!10080-102A8;0.112666!10760-110E4;0.573797!10709-109H7;0.278894!10710-109H8;0.245041!10703-109H1;0.140724!10719-109I8;0.966424!10642-109A3;0.465905!10177-103C6;0.252703!10164-103B2;0.43071!10173-103C2;0.502702!10166-103B4;0.355687!10083-102B2;0.259939!10188-103D8;0.271983!10552-107I3;0.427524!10553-107I4;0.558846!10013-101C4;0.386114!10536-107G5;0.299897!10618-108G6;0.0790808!10423-106C9;0.135364!10785-110H2;0.246473!12238-129G6;0.324764!12239-129G7;0.414068!12240-129G8;0.596219!10416-106C2;0.447682!10801-110I9;0.491749!10766-110F1;0.540614!10824-111C5;0.381883!10825-111C6;0.791241!10826-111C7;0.810512!10454-106G4;0.794016!10409-106B4;0.675147!10638-108I8;0.289642!10636-108I6;0.122413!10513-107D9;0.193681!10420-106C6;0.118817!10082-102B1;0.115267!10014-101C5;0.577573!10070-101I7;0.457313!10452-106G2;0.428004!10453-106G3;0.996998!10449-106F8;0.901114!10042-101F6;0.845323!10069-101I6;0.198538!10193-103E4;0.326764!10631-108I1;0.336795!10438-106E6;0.418081!10488-107B2;0.0531579!10196-103E7;0.386956!10071-101I8;0.631258!10071-101I8;0.429674!10041-101F5;0.742006!10451-106G1;0.155328!10450-106F9;0.302097!10604-108F1;0.208894!10605-108F2;0.010633!10606-108F3;0.0369432!10603-108E9;0.0101719!10497-107C2;0.00999992!10448-106F7;0.159078!10643-109A4;0.116221!10426-106D3;0.10478!10431-106D8;0.263427!10197-103E8;0.154591!10443-106F2;0.439285!10815-111B5;0.78852!10816-111B6;0.304284!10817-111B7;0.302397!10015-101C6;0.282431!10410-106B5;0.454165!10054-101G9;0.435992!10758-110E2;0.302796!10711-109H9;0.148525!10040-101F4;0.240825!10470-106I2;0.470975!10415-106C1;0.593305!10198-103E9;0.0131318!10614-108G2;0.439528!10612-108F9;0.390174!10549-107H9;0.168651!10615-108G3;0.0609312!10487-107B1;0.584517!10433-106E1;0.859547!10688-109F4;0.0821303!10444-106F3;0.252482!10444-106F3;0.0576299!10485-107A8;0.0482561!10413-106B8;0.159132!10175-103C4;0.180948!10161-103A8;0.248063!12131-128D7;0.231289!10624-108H3;0.526583!10712-109I1;0.0229312!10205-103F7;0.69553!10206-103F8;0.499966!10207-103F9;0.522118!10050-101G5;0.691526!10051-101G6;0.563433!10016-101C7;0.45825!10046-101G1;0.690261!10778-110G4;0.602854!10633-108I3;0.875815!10818-111B8;0.206313!10819-111B9;0.592529!10820-111C1;0.602136!10484-107A7;0.62974!10808-111A7;0.261046!10169-103B7;0.494153!10153-102I9;0.405249!13425-144D5;0.379047!13433-144E4;0.0680716!13437-144E8;0.137068!11904-125F5;0.212094!11905-125F6;0.563227!10039-101F3;0.586596!10791-110H8;0.468749!10017-101C8;0.346334!10045-101F9;0.47714!10509-107D5;0.499804!10839-111E2;0.194063!10692-109F8;0.447555!10079-102A7;0.307807!10078-102A6;0.351809!10721-110A1;0.507092!10569-108B2;0.0292574!10570-108B3;0.749724!10571-108B4;0.968567!10647-109A8;0.945982!10752-110D5;0.0233889!10782-110G8;0.269064!10726-110A6;0.911894!10018-101C9;0.421978!10086-102B5;0.488014!10182-103D2;0.209022!10165-103B3;0.199307!10499-107C4;0.199683!10408-106B3;0.152648!10019-101D1;0.0587649!10068-101I5;0.361362!10075-102A3;0.588541!10077-102A5;0.386061!10727-110A7;0.029152!10775-110G1;0.59446!10412-106B7;0.551676!12231-129F8;0.119159!12232-129F9;0.32057!12233-129G1;0.306044!12234-129G2;0.140403!10414-106B9;0.408635!10170-103B8;0.293613!10183-103D3;0.431241!10150-102I6;0.423194!10174-103C3;0.323878!10155-103A2;0.287254!10038-101F2;0.210533!10838-111E1;0.1756!10759-110E3;0.203672!10514-107E1;0.0187183!10465-106H6;0.835759!10691-109F7;0.773574!10843-111E6;0.579516!10844-111E7;0.727554!11747-123G1;0.829491!11748-123G2;0.855298!11749-123G3;0.950434!11750-123G4;0.816811!11751-123G5;0.638046!11840-124H4;0.520379!11752-123G6;0.681297!11753-123G7;0.538526!11754-123G8;0.77344!11755-123G9;0.944305!11756-123H1;0.372675!11833-124G6;0.593979!11760-123H5;0.733377!11836-124G9;0.581323!11758-123H3;0.984192!11835-124G8;0.592942!11762-123H7;0.322637!11838-124H2;0.302253!11757-123H2;0.35161!11759-123H4;0.748276!11761-123H6;0.997296!11842-124H6;0.774286!11837-124H1;0.851389!10568-108B1;0.606837!13230-141I8;0.624338!13231-141I9;0.492244!10696-109G3;0.445852!10493-107B7;0.82477!10494-107B8;0.155362!10850-111F4;0.0646496!10851-111F5;0.0862367!10852-111F6;0.0850839!10853-111F7;0.0152137!10854-111F8;0.216834!10855-111F9;0.00577199!10856-111G1;0.87109!10847-111F1;0.238767!10846-111E9;0.0953605!10848-111F2;0.129553!10845-111E8;0.26757!10857-111G2;0.0698647!10858-111G3;0.178385!10156-103A3;0.0330748!11901-125F2;0.333526!11902-125F3;0.909361!11903-125F4;0.778051!10689-109F5;0.96058!10648-109A9;0.405508!10784-110H1;0.147791!10744-110C6;0.464209!10772-110F7;0.950105!10474-106I6;0.315371!10600-108E6;0.83671!10684-109E9;0.0109395!12226-129F3;0.758594!12227-129F4;0.748986!10508-107D4;0.546702!10539-107G8;0.767494!10607-108F4;0.991558!10555-107I6;0.190338!10774-110F9;0.993249!10637-108I7;0.583299!10663-109C6;0.261616!10728-110A8;0.168165!10729-110A9;0.334498!10430-106D7;0.993759!10730-110B1;0.268693!10813-111B3;0.782072!10812-111B2;0.753308!10037-101F1;0.581202!10172-103C1;0.453243!10163-103B1;0.560257!10076-102A4;0.328342!10073-102A1;0.45085!10036-101E9;0.60084!10195-103E6;0.384963!10277-104E7;0.469578!10434-106E2;0.173942!10550-107I1;0.245154!10545-107H5;0.162678!10544-107H4;0.298327!10704-109H2;0.0690543!10510-107D6;0.497647!10558-107I9;0.0525241!10020-101D2;0.482715!10732-110B3;0.306915!10049-101G4;0.679913!10698-109G5;0.897301!10437-106E5;0.195656!10417-106C3;0.00265516!10035-101E8;0.51553!10171-103B9;0.407337!10157-103A4;0.265412!10034-101E7;0.370646!10072-101I9;0.398281!10199-103F1;0.588245!10200-103F2;0.467414!10697-109G4;0.358313!10723-110A3;0.205273!10179-103C8;0.172559!10160-103A7;0.107325!10180-103C9;0.0488879!10162-103A9;0.178961!10021-101D3;0.203829!10840-111E3;0.386103!10706-109H4;0.423043!10033-101E6;0.188357!10032-101E5;0.173002!10490-107B4;0.338383!10439-106E7;0.0729726!10022-101D4;0.233329!10176-103C5;0.492196!10469-106I1;0.555189!10067-101I4;0.845556!10411-106B6;0.534742!10471-106I3;0.127389!10030-101E3;0.878149!10475-106I7;0.157092!10787-110H4;0.581824!10477-106I9;0.703854!10695-109G2;0.517779!11771-123I7;0.563098!11772-123I8;0.0853718!11773-123I9;0.577035!10093-102C3;0.844474!10442-106F1;0.449872!10442-106F1;0.702967!10201-103F3;0.575621!10639-108I9;0.356802!11843-124H7;0.0620935!11841-124H5;0.0526598!10693-109F9;0.109222!10436-106E4;0.27092!10483-107A6;0.738022!10282-104F3;0.47046!10023-101D5;0.37375!10066-101I3;0.414189!10065-101I2;0.41152!10800-110I8;0.433667!10610-108F7;0.75794!10841-111E4;0.821886!10541-107H1;0.163622!10842-111E5;0.287084!10562-108A4;0.469562!10024-101D6;0.890821!10064-101I1;0.540694!10609-108F6;0.532064!10048-101G3;0.83714!10781-110G7;0.381188!10181-103D1;0.634213!10159-103A6;0.23205!10056-101H2;0.214047!10737-110B8;0.310487!10025-101D7;0.693913!10044-101F8;0.108749!10424-106D1;0.16393!10463-106H4;0.268545!10616-108G4;0.152115!10486-107A9;0.299343!10062-101H8;0.47794!10202-103F4;0.516066!10158-103A5;0.483342!10441-106E9;0.12128!10031-101E4;0.32176!10063-101H9;0.374847!10063-101H9;0.631388!11763-123H8;0.412862!11765-123I1;0.445038!11768-123I4;0.388756!10807-111A6;0.311722!10790-110H7;0.198051!10798-110I6;0.347718!10786-110H3;0.0593281!10591-108D6;0.301917!10593-108D8;0.577768!10590-108D5;0.286308!10026-101D8;0.241106!10096-102C6;0.283901!10168-103B6;0.879367!10154-103A1;0.106025!10209-103G2;0.242102!10061-101H7;0.333864!10027-101D9;0.511526!10043-101F7;0.559629!10783-110G9;0.880372!10028-101E1;0.00454073!10060-101H6;0.759879!10203-103F5;0.483846!10059-101H5;0.367943!10047-101G2;0.422942!10029-101E2;0.287374!10058-101H4;0.445974!10418-106C4;0.499326!10492-107B6;0.0983553!10694-109G1;0.0465011!10797-110I5;0.617491!10057-101H3;0.280051!10100-102D1;0.346358!10055-101H1;0.403307!10204-103F6;0.419661!10191-103E2;0.680007!10563-108A5;0.196161
|name=motif_CCCTNA
|name=motif_CCCTNA
|tomtom_result=REI1#MA0364.1;1;5.20154e-05;0.0247593;0.0343431;6;CCCTGA;CCCCTGA;+!USV1#MA0413.1;7;7.23203e-05;0.0344245;0.0343431;6;CCCTGA;AAATTCCCCCTGAATTTGTG;+!INSM1#MA0155.1;4;0.000828446;0.39434;0.262272;6;CCCTGA;CGCCCCCTGACA;-!ESR1#MA0112.2;11;0.00196469;0.935193;0.466491;6;CCCTGA;GGCCCAGGTCACCCTGACCT;+!NRG1#MA0347.1;9;0.00316557;1.50681;0.550267;6;CCCTGA;TGCGATGGACCCTGATCTAG;-!RPH1#MA0372.1;2;0.00347629;1.65471;0.550267;6;CCCTGA;ACCCCTAA;+!RDS2#MA0362.1;0;0.00441909;2.10349;0.599575;6;CCCTGA;CCCCGAG;-!GIS1#MA0306.1;2;0.00544398;2.59133;0.646301;6;CCCTGA;ACCCCTAAA;+!TBF1#MA0403.1;2;0.00974919;4.64061;0.997635;6;CCCTGA;AACCCTAA;+!ESR2#MA0258.1;7;0.0122839;5.84714;0.997635;6;CCCTGA;CAGGTCACCGTGACCTTG;-!ZAP1#MA0440.1;5;0.014842;7.06478;0.997635;6;CCCTGA;CATGACCTTTAAGGT;-!ESR1#MA0112.2;8;0.0169398;8.06336;0.997635;6;CCCTGA;CCAGGTCACCGTGACCCC;+!usp#MA0016.1;0;0.0187406;8.92054;0.997635;6;CCCTGA;CCGTGACCCC;-!HAP4#MA0315.1;4;0.0197919;9.42096;0.997635;6;CCCTGA;TCGCCTCTGATTGGT;-
}}
}}

Latest revision as of 14:48, 7 September 2012

Full Name: motif_CCCTNA

Motif matrix
POACGT
0104400
0204400
0304400
0400044
0500440
0644000

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
REI1#MA0364.115.20154e-050.02475930.03434316CCCTGACCCCTGA+
USV1#MA0413.177.23203e-050.03442450.03434316CCCTGAAAATTCCCCCTGAATTTGTG+
INSM1#MA0155.140.0008284460.394340.2622726CCCTGACGCCCCCTGACA-
ESR1#MA0112.2110.001964690.9351930.4664916CCCTGAGGCCCAGGTCACCCTGACCT+
NRG1#MA0347.190.003165571.506810.5502676CCCTGATGCGATGGACCCTGATCTAG-
RPH1#MA0372.120.003476291.654710.5502676CCCTGAACCCCTAA+
RDS2#MA0362.100.004419092.103490.5995756CCCTGACCCCGAG-
GIS1#MA0306.120.005443982.591330.6463016CCCTGAACCCCTAAA+
TBF1#MA0403.120.009749194.640610.9976356CCCTGAAACCCTAA+
ESR2#MA0258.170.01228395.847140.9976356CCCTGACAGGTCACCGTGACCTTG-
ZAP1#MA0440.150.0148427.064780.9976356CCCTGACATGACCTTTAAGGT-
ESR1#MA0112.280.01693988.063360.9976356CCCTGACCAGGTCACCGTGACCCC+
usp#MA0016.100.01874068.920540.9976356CCCTGACCGTGACCCC-
HAP4#MA0315.140.01979199.420960.9976356CCCTGATCGCCTCTGATTGGT-
Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MacroAPE_1083:Motif_CCCTNA&oldid=2134496"